DC-Build-Header: salmon 0.7.2+ds1-2 / 2017-07-06 20:35:31 +0000 DC-Task: type:rebuild-binarch-only source:salmon version:0.7.2+ds1-2 chroot:unstable esttime:231 logfile:/tmp/salmon_0.7.2+ds1-2_unstable_clang3.9.log modes:clang:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang salmon_0.7.2+ds1-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-44-81.eu-central-1.compute.internal +==============================================================================+ | salmon 0.7.2+ds1-2 (amd64) Thu, 06 Jul 2017 20:35:31 +0000 | +==============================================================================+ Package: salmon Version: 0.7.2+ds1-2 Source Version: 0.7.2+ds1-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-01b022ac-3efb-458b-97c8-f817a1eefe13' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang ---------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=3.9 + echo 'Install of clang-3.9' Install of clang-3.9 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [255 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Translation-en.diff/Index [27.9 kB] Get:5 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-0216.39.pdiff [15.0 kB] Get:6 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-0817.00.pdiff [7416 B] Get:7 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-1415.16.pdiff [17.0 kB] Get:8 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-02-2015.53.pdiff [15.2 kB] Get:9 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-03-0215.43.pdiff [50.2 kB] Get:10 http://127.0.0.1:9999/debian unstable/main Sources 2017-07-03-0815.58.pdiff [5500 B] Get:11 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2017-07-06-0817.23.pdiff [31.2 kB] Get:41 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-02-0216.39.pdiff [1271 B] Get:42 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-02-2015.53.pdiff [793 B] Get:43 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-03-0215.43.pdiff [327 B] Get:44 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-03-0815.58.pdiff [270 B] Get:45 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-03-1420.59.pdiff [1066 B] Get:46 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-03-2015.52.pdiff [465 B] Get:47 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-04-0215.56.pdiff [291 B] Get:48 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-04-0817.36.pdiff [539 B] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2017-07-06-0817.23.pdiff [31.2 kB] Get:49 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-04-1416.28.pdiff [484 B] Get:50 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-04-2017.16.pdiff [1126 B] Get:51 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-05-0215.45.pdiff [214 B] Get:52 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-05-0817.10.pdiff [606 B] Get:53 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-05-1416.09.pdiff [214 B] Get:54 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-05-2019.56.pdiff [2615 B] Get:55 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-06-0216.07.pdiff [1869 B] Get:56 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-06-0817.23.pdiff [915 B] Get:56 http://127.0.0.1:9999/debian unstable/main Translation-en 2017-07-06-0817.23.pdiff [915 B] Fetched 974 kB in 1s (811 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-3.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: cpp-6 g++-6 gcc-6 gcc-6-base gcc-7-base libasan3 libatomic1 libbsd0 libcc1-0 libcilkrts5 libclang-common-3.9-dev libclang1-3.9 libedit2 libffi6 libgcc-6-dev libgcc1 libgomp1 libitm1 libjsoncpp1 libllvm3.9 liblsan0 libmpx2 libncurses5 libobjc-6-dev libobjc4 libquadmath0 libstdc++-6-dev libstdc++6 libtsan0 libubsan0 Suggested packages: gnustep gnustep-devel clang-3.9-doc gcc-6-locales g++-6-multilib gcc-6-doc libstdc++6-6-dbg gcc-6-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan3-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg libstdc++-6-doc Recommended packages: llvm-3.9-dev python libgpm2 The following NEW packages will be installed: clang-3.9 libbsd0 libclang-common-3.9-dev libclang1-3.9 libedit2 libffi6 libjsoncpp1 libllvm3.9 libncurses5 libobjc-6-dev libobjc4 The following packages will be upgraded: cpp-6 g++-6 gcc-6 gcc-6-base gcc-7-base libasan3 libatomic1 libcc1-0 libcilkrts5 libgcc-6-dev libgcc1 libgomp1 libitm1 liblsan0 libmpx2 libquadmath0 libstdc++-6-dev libstdc++6 libtsan0 libubsan0 20 upgraded, 11 newly installed, 0 to remove and 13 not upgraded. Need to get 83.9 MB of archives. After this operation, 251 MB of additional disk space will be used. 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Preparing to unpack .../16-libclang-common-3.9-dev_1%3a3.9.1-10_amd64.deb ... Unpacking libclang-common-3.9-dev (1:3.9.1-10) ... Selecting previously unselected package clang-3.9. Preparing to unpack .../17-clang-3.9_1%3a3.9.1-10_amd64.deb ... Unpacking clang-3.9 (1:3.9.1-10) ... Setting up libquadmath0:amd64 (7.1.0-9) ... Setting up libncurses5:amd64 (6.0+20161126-1) ... Setting up libgomp1:amd64 (7.1.0-9) ... Setting up libatomic1:amd64 (7.1.0-9) ... Setting up libcc1-0:amd64 (7.1.0-9) ... Setting up libobjc4:amd64 (7.1.0-9) ... Setting up libcilkrts5:amd64 (7.1.0-9) ... Setting up libubsan0:amd64 (7.1.0-9) ... Setting up libtsan0:amd64 (7.1.0-9) ... Setting up gcc-6-base:amd64 (6.4.0-1) ... Setting up libbsd0:amd64 (0.8.5-1) ... Setting up liblsan0:amd64 (7.1.0-9) ... Setting up libmpx2:amd64 (7.1.0-9) ... Processing triggers for libc-bin (2.24-12) ... Setting up libffi6:amd64 (3.2.1-6) ... Setting up cpp-6 (6.4.0-1) ... Setting up libitm1:amd64 (7.1.0-9) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libasan3:amd64 (6.4.0-1) ... Setting up libgcc-6-dev:amd64 (6.4.0-1) ... Setting up libstdc++-6-dev:amd64 (6.4.0-1) ... Setting up libllvm3.9:amd64 (1:3.9.1-10) ... Setting up libclang-common-3.9-dev (1:3.9.1-10) ... Setting up gcc-6 (6.4.0-1) ... Setting up g++-6 (6.4.0-1) ... Setting up libobjc-6-dev:amd64 (6.4.0-1) ... Setting up libclang1-3.9:amd64 (1:3.9.1-10) ... Setting up clang-3.9 (1:3.9.1-10) ... Processing triggers for libc-bin (2.24-12) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-3.9 g++-4.6 + ln -s clang-3.9 gcc-4.6 + ln -s clang-3.9 cpp-4.6 + ln -s clang-3.9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-3.9 g++-4.7 + ln -s clang-3.9 gcc-4.7 + ln -s clang-3.9 cpp-4.7 + ln -s clang-3.9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-3.9 g++-4.8 + ln -s clang-3.9 gcc-4.8 + ln -s clang-3.9 cpp-4.8 + ln -s clang-3.9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-3.9 g++-4.9 + ln -s clang-3.9 gcc-4.9 + ln -s clang-3.9 cpp-4.9 + ln -s clang-3.9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-3.9 g++-5 + ln -s clang-3.9 gcc-5 + ln -s clang-3.9 cpp-5 + ln -s clang-3.9 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-3.9 g++-6 + ln -s clang-3.9 gcc-6 + ln -s clang-3.9 cpp-6 + ln -s clang-3.9 gcc + echo 'gcc-6 hold' + dpkg --set-selections + echo 'g++-6 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-3.9 g++-7 + ln -s clang-3.9 gcc-7 + ln -s clang-3.9 cpp-7 + ln -s clang-3.9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/salmon-LL9phP + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgnutls30 libhogweed4 libidn2-0 libnettle6 libp11-kit0 libtasn1-6 libunistring2 The following packages will be upgraded: apt cpp debconf g++ gcc libapt-pkg5.0 libdebconfclient0 libperl5.24 libsystemd0 libudev1 perl perl-base perl-modules-5.24 13 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 6330 kB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libperl5.24 amd64 5.24.1-6 [3525 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 perl amd64 5.24.1-6 [218 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 perl-base amd64 5.24.1-6 [1344 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 perl-modules-5.24 all 5.24.1-6 [2723 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libapt-pkg5.0 amd64 1.5~beta1 [922 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libnettle6 amd64 3.3-1+b1 [191 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libhogweed4 amd64 3.3-1+b1 [136 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libunistring2 amd64 0.9.7-2 [377 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libidn2-0 amd64 0.16-1+b1 [56.6 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libp11-kit0 amd64 0.23.7-2 [193 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libtasn1-6 amd64 4.12-2 [51.0 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libgnutls30 amd64 3.5.13-2 [914 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 apt amd64 1.5~beta1 [1237 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 debconf all 1.5.62 [160 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libsystemd0 amd64 233-10 [281 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libudev1 amd64 233-10 [126 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libdebconfclient0 amd64 0.229 [47.9 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 cpp amd64 4:6.3.0-4d1 [18.8 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 gcc amd64 4:6.3.0-4d1 [5252 B] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 g++ amd64 4:6.3.0-4d1 [1548 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 0s (87.9 MB/s) (Reading database ... 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Setting up perl-modules-5.24 (5.24.1-6) ... Setting up libperl5.24:amd64 (5.24.1-6) ... Setting up gcc (4:6.3.0-4d1) ... Setting up perl (5.24.1-6) ... Processing triggers for libc-bin (2.24-12) ... Setting up g++ (4:6.3.0-4d1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'salmon' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/salmon.git Please use: git clone https://anonscm.debian.org/git/debian-med/salmon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1025 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main salmon 0.7.2+ds1-2 (dsc) [2430 B] Get:2 http://127.0.0.1:9999/debian unstable/main salmon 0.7.2+ds1-2 (tar) [947 kB] Get:3 http://127.0.0.1:9999/debian unstable/main salmon 0.7.2+ds1-2 (diff) [76.3 kB] Fetched 1025 kB in 0s (5775 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/salmon-LL9phP/salmon-0.7.2+ds1' with '<>' I: NOTICE: Log filtering will replace 'build/salmon-LL9phP' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-x8m0zD/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-x8m0zD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-x8m0zD/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-x8m0zD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-x8m0zD/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-x8m0zD/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-x8m0zD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), cmake, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-program-options-dev, libboost-timer-dev, libjellyfish-2.0-dev (>> 2.2.3-2), libsparsehash-dev, libdivsufsort-dev, libbwa-dev, pkg-config, libjemalloc-dev, libcereal-dev, libtbb-dev, libgff-dev, libstaden-read-dev, libspdlog-dev, libtclap-dev, help2man, sphinx-doc, python-sphinx | python3-sphinx, python-sphinx-rtd-theme | python3-sphinx-rtd-theme, zlib1g-dev, libeigen3-dev Filtered Build-Depends: debhelper (>= 9), cmake, libboost-filesystem-dev, libboost-system-dev, libboost-iostreams-dev, libboost-thread-dev, libboost-program-options-dev, libboost-timer-dev, libjellyfish-2.0-dev (>> 2.2.3-2), libsparsehash-dev, libdivsufsort-dev, libbwa-dev, pkg-config, libjemalloc-dev, libcereal-dev, libtbb-dev, libgff-dev, libstaden-read-dev, libspdlog-dev, libtclap-dev, help2man, sphinx-doc, python-sphinx, python-sphinx-rtd-theme, zlib1g-dev, libeigen3-dev dpkg-deb: building package 'sbuild-build-depends-salmon-dummy' in '/<>/resolver-x8m0zD/apt_archive/sbuild-build-depends-salmon-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-salmon-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-x8m0zD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-x8m0zD/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-x8m0zD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-x8m0zD/apt_archive ./ Sources [694 B] Get:5 copy:/<>/resolver-x8m0zD/apt_archive ./ Packages [759 B] Fetched 2416 B in 0s (0 B/s) Reading package lists... Reading package lists... Install salmon build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism docutils-common docutils-doc file fonts-font-awesome fonts-lato gettext gettext-base groff-base help2man icu-devtools intltool-debian libarchive-zip-perl libarchive13 libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost-timer-dev libboost-timer1.62-dev libboost-timer1.62.0 libboost1.62-dev libbwa-dev libcereal-dev libcroco3 libcurl3 libcurl3-gnutls libdivsufsort-dev libdivsufsort3 libeigen3-dev libexpat1 libfile-stripnondeterminism-perl libgff-dev libglib2.0-0 libgssapi-krb5-2 libicu-dev libicu57 libjellyfish-2.0-2 libjellyfish-2.0-dev libjemalloc-dev libjemalloc1 libjs-jquery libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsparsehash-dev libspdlog-dev libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstaden-read-dev libstaden-read11 libtbb-dev libtbb2 libtclap-dev libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db mime-support pkg-config po-debconf procps python python-alabaster python-babel python-babel-localedata python-docutils python-imagesize python-jinja2 python-markupsafe python-minimal python-pkg-resources python-pygments python-roman python-six python-sphinx python-sphinx-rtd-theme python-tz python2.7 python2.7-minimal readline-common sgml-base sphinx-common sphinx-doc sphinx-rtd-theme-common tzdata xml-core zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost1.62-doc libboost-context1.62-dev libboost-coroutine1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-signals1.62-dev libboost-test1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev samtools libeigen3-doc libmrpt-dev krb5-doc krb5-user icu-doc tbb-examples libtbb-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc python-setuptools ttf-bitstream-vera libjs-mathjax dvipng texlive-latex-extra texlive-fonts-recommended texlive-generic-extra python2.7-doc binfmt-support readline-doc sgml-base-doc Recommended packages: curl | wget | lynx-cur ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc libpaper-utils python-pil python-chardet The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism docutils-common docutils-doc file fonts-font-awesome fonts-lato gettext gettext-base groff-base help2man icu-devtools intltool-debian libarchive-zip-perl libarchive13 libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-filesystem-dev libboost-filesystem1.62-dev libboost-filesystem1.62.0 libboost-iostreams-dev libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-program-options-dev libboost-program-options1.62-dev libboost-program-options1.62.0 libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost-timer-dev libboost-timer1.62-dev libboost-timer1.62.0 libboost1.62-dev libbwa-dev libcereal-dev libcroco3 libcurl3 libcurl3-gnutls libdivsufsort-dev libdivsufsort3 libeigen3-dev libexpat1 libfile-stripnondeterminism-perl libgff-dev libglib2.0-0 libgssapi-krb5-2 libicu-dev libicu57 libjellyfish-2.0-2 libjellyfish-2.0-dev libjemalloc-dev libjemalloc1 libjs-jquery libjs-modernizr libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsparsehash-dev libspdlog-dev libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libstaden-read-dev libstaden-read11 libtbb-dev libtbb2 libtclap-dev libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db mime-support pkg-config po-debconf procps python python-alabaster python-babel python-babel-localedata python-docutils python-imagesize python-jinja2 python-markupsafe python-minimal python-pkg-resources python-pygments python-roman python-six python-sphinx python-sphinx-rtd-theme python-tz python2.7 python2.7-minimal readline-common sbuild-build-depends-salmon-dummy sgml-base sphinx-common sphinx-doc sphinx-rtd-theme-common tzdata xml-core zlib1g-dev 0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded. Need to get 76.2 MB of archives. After this operation, 425 MB of additional disk space will be used. Get:1 copy:/<>/resolver-x8m0zD/apt_archive ./ sbuild-build-depends-salmon-dummy 0.invalid.0 [974 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.1-2 [27.6 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.13-2 [389 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.13-2 [1383 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.13-2 [40.5 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.1-3 [85.6 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3 [151 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.16.2-5 [572 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-3 [1342 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.13-2 [1895 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.13-2 [285 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.13-2 [20.0 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.13-2 [154 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.7.2-1 [1216 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.12-3 [58.1 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20161125 [27.9 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.12-3 [249 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.2-2 [294 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9 [12.4 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.15-1 [61.7 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.15-1 [119 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.15-1 [311 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.15-1 [154 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3 [68.2 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3 [105 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.44+dfsg-7 [85.2 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.44+dfsg-7 [219 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.24.0-1 [81.6 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.17.0-4+b1 [43.0 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2l-2 [1294 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.52.1-5 [291 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libuv1 amd64 1.9.1-3 [84.4 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.7.2-1 [3038 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b1 [18.7 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 sgml-base all 1.29 [14.8 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 tzdata all 2017b-2 [260 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.30-1 [222 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.30-1 [111 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.30-1 [63.9 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.035-2 [17.0 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.035-2 [10.7 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.52.3-1 [2742 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.6.2 [968 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 xml-core all 0.17 [23.2 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 docutils-common all 0.13.1+dfsg-2 [200 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 docutils-doc all 0.13.1+dfsg-2 [913 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 fonts-font-awesome all 4.7.0~dfsg-1 [514 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 help2man amd64 1.47.4 [162 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-6 [178 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62.0 amd64 1.62.0+dfsg-4+b1 [30.8 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62-dev amd64 1.62.0+dfsg-4+b1 [29.7 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-4+b1 [32.7 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-4+b1 [36.3 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62-dev amd64 1.62.0+dfsg-4+b1 [36.7 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62.0 amd64 1.62.0+dfsg-4+b1 [43.2 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-4+b1 [126 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62-dev amd64 1.62.0+dfsg-4+b1 [163 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62-dev amd64 1.62.0+dfsg-4+b1 [50.4 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62.0 amd64 1.62.0+dfsg-4+b1 [63.6 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62-dev amd64 1.62.0+dfsg-4+b1 [34.2 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem1.62-dev amd64 1.62.0+dfsg-4+b1 [73.2 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libboost-filesystem-dev amd64 1.62.0.1 [3448 B] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-4+b1 [288 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-6 [16.5 MB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62-dev amd64 1.62.0+dfsg-4+b1 [335 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.62.0 amd64 1.62.0+dfsg-4+b1 [51.1 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams1.62-dev amd64 1.62.0+dfsg-4+b1 [57.5 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libboost-iostreams-dev amd64 1.62.0.1 [3408 B] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62.0 amd64 1.62.0+dfsg-4+b1 [160 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options1.62-dev amd64 1.62.0+dfsg-4+b1 [184 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libboost-program-options-dev amd64 1.62.0.1 [3430 B] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system-dev amd64 1.62.0.1 [3554 B] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-4+b1 [71.8 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62-dev amd64 1.62.0+dfsg-4+b1 [71.6 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread-dev amd64 1.62.0.1 [3442 B] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.62.0 amd64 1.62.0+dfsg-4+b1 [34.8 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.62-dev amd64 1.62.0+dfsg-4+b1 [34.4 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer-dev amd64 1.62.0.1 [3534 B] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libbwa-dev amd64 0.7.15-3 [129 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libcereal-dev amd64 1.2.1-2 [238 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3-gnutls amd64 7.52.1-5 [289 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libdivsufsort3 amd64 2.0.1-2 [46.3 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libdivsufsort-dev amd64 2.0.1-2 [27.1 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libeigen3-dev all 3.3.4-2 [842 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libgff-dev amd64 1.0-1+b1 [138 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libjellyfish-2.0-2 amd64 2.2.6-1+b2 [62.2 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libjellyfish-2.0-dev amd64 2.2.6-1+b2 [128 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libjemalloc1 amd64 3.6.0-9.1 [89.8 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libjemalloc-dev amd64 3.6.0-9.1 [167 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libjs-jquery all 3.1.1-2 [154 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libjs-modernizr all 2.6.2+ds1-1 [71.3 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libsparsehash-dev all 2.0.2-1 [76.9 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libspdlog-dev amd64 1:0.11.0-2 [132 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libstaden-read11 amd64 1.14.8-2 [311 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libstaden-read-dev amd64 1.14.8-2 [390 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libtbb2 amd64 4.3~20150611-2 [136 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libtbb-dev amd64 4.3~20150611-2 [236 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libtclap-dev amd64 1.2.1-1 [717 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 python-alabaster all 0.7.8-1 [18.4 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 python-pkg-resources all 36.0.1-1 [168 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 python-tz all 2017.2-2 [33.9 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 python-babel all 2.4.0+dfsg.1-2 [84.3 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 python-roman all 2.0.0-2 [8130 B] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 python-docutils all 0.13.1+dfsg-2 [373 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 python-imagesize all 0.7.1-1 [3814 B] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 python-markupsafe amd64 1.0-1+b1 [13.9 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 python-jinja2 all 2.9.6-1 [117 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 python-pygments all 2.2.0+dfsg-1 [590 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 python-six all 1.10.0-4 [14.4 kB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 sphinx-common all 1.4.9-2 [350 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 python-sphinx all 1.4.9-2 [434 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 sphinx-rtd-theme-common all 0.2.4-1 [224 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 python-sphinx-rtd-theme all 0.2.4-1 [10.3 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 sphinx-doc all 1.4.9-2 [1164 kB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-5 [205 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.2 MB in 1s (45.6 MB/s) Selecting previously unselected package groff-base. (Reading database ... 10178 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.4.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.13-2_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.13-2) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.13-2_amd64.deb ... Unpacking python2.7-minimal (2.7.13-2) ... 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Unpacking python (2.7.13-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../001-cmake-data_3.7.2-1_all.deb ... Unpacking cmake-data (3.7.2-1) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../002-libprocps6_2%3a3.3.12-3_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3) ... Selecting previously unselected package lsb-base. Preparing to unpack .../003-lsb-base_9.20161125_all.deb ... Unpacking lsb-base (9.20161125) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.12-3_amd64.deb ... Unpacking procps (2:3.3.12-3) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../005-liblzo2-2_2.08-1.2+b2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.08-1.2+b2) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../006-libicu57_57.1-6_amd64.deb ... Unpacking libicu57:amd64 (57.1-6) ... 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Setting up libjellyfish-2.0-2 (2.2.6-1+b2) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libboost-program-options-dev:amd64 (1.62.0.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-5) ... Setting up libfile-stripnondeterminism-perl (0.035-2) ... Setting up libboost-atomic1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libdivsufsort-dev:amd64 (2.0.1-2) ... Setting up libboost-date-time1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libarchive13:amd64 (3.2.2-2) ... Setting up libjellyfish-2.0-dev (2.2.6-1+b2) ... Setting up libboost-thread1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up sphinx-doc (1.4.9-2) ... Setting up libeigen3-dev (3.3.4-2) ... Setting up libboost-regex1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up python2.7 (2.7.13-2) ... Setting up autoconf (2.69-10) ... Setting up libicu-dev (57.1-6) ... Setting up file (1:5.30-1) ... Setting up libkrb5support0:amd64 (1.15-1) ... Setting up libpython-stdlib:amd64 (2.7.13-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-system1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-filesystem1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up sphinx-rtd-theme-common (0.2.4-1) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.4) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.13-2) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up libtool (2.4.6-2) ... Setting up libk5crypto3:amd64 (1.15-1) ... Setting up libboost-filesystem1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-4+b1) ... Setting up po-debconf (1.0.20) ... Setting up libboost-regex1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-system-dev:amd64 (1.62.0.1) ... Setting up python-tz (2017.2-2) ... Setting up libboost-iostreams1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up python-imagesize (0.7.1-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (36.0.1-1) ... Setting up libboost-filesystem-dev:amd64 (1.62.0.1) ... Setting up python-roman (2.0.0-2) ... Setting up libboost-chrono1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libboost-timer1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up python-markupsafe (1.0-1+b1) ... Setting up python-six (1.10.0-4) ... Setting up python-pygments (2.2.0+dfsg-1) ... Setting up libboost-iostreams-dev:amd64 (1.62.0.1) ... Setting up python-sphinx-rtd-theme (0.2.4-1) ... Setting up libboost-thread1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libkrb5-3:amd64 (1.15-1) ... Setting up libboost-thread-dev:amd64 (1.62.0.1) ... Setting up python-jinja2 (2.9.6-1) ... Setting up python-babel (2.4.0+dfsg.1-2) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libboost-timer-dev:amd64 (1.62.0.1) ... Setting up libgssapi-krb5-2:amd64 (1.15-1) ... Setting up libcurl3:amd64 (7.52.1-5) ... Setting up libcurl3-gnutls:amd64 (7.52.1-5) ... Setting up cmake (3.7.2-1) ... Setting up libstaden-read11:amd64 (1.14.8-2) ... Setting up libstaden-read-dev (1.14.8-2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.13.1+dfsg-2) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.13.1+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.4.9-2) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.035-2) ... Setting up debhelper (10.6.2) ... Setting up sbuild-build-depends-salmon-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1 gcc-6_6.4.0-1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 linux-libc-dev_4.11.6-1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-1 build-essential_12.3 bzip2_1.0.6-8.1 clang-3.9_1:3.9.1-10 cmake_3.7.2-1 cmake-data_3.7.2-1 coreutils_8.26-3 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1 dash_0.5.8-2.4 debconf_1.5.62 debfoster_2.7-2.1+b1 debhelper_10.6.2 debian-archive-keyring_2017.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-2 diffutils_1:3.5-3 docutils-common_0.13.1+dfsg-2 docutils-doc_0.13.1+dfsg-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 eatmydata_105-5 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-2 fonts-font-awesome_4.7.0~dfsg-1 fonts-lato_2.0-2 g++_4:6.3.0-4d1 g++-6_6.4.0-1 gcc_4:6.3.0-4d1 gcc-6_6.4.0-1 gcc-6-base_6.4.0-1 gcc-7-base_7.1.0-9 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.18-8 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5+b1 help2man_1.47.4 hostname_3.18+b1 icu-devtools_57.1-6 init-system-helpers_1.48 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta1 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan3_6.4.0-1 libatomic1_7.1.0-9 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-1 libboost-atomic1.62-dev_1.62.0+dfsg-4+b1 libboost-atomic1.62.0_1.62.0+dfsg-4+b1 libboost-chrono1.62-dev_1.62.0+dfsg-4+b1 libboost-chrono1.62.0_1.62.0+dfsg-4+b1 libboost-date-time1.62-dev_1.62.0+dfsg-4+b1 libboost-date-time1.62.0_1.62.0+dfsg-4+b1 libboost-filesystem-dev_1.62.0.1 libboost-filesystem1.62-dev_1.62.0+dfsg-4+b1 libboost-filesystem1.62.0_1.62.0+dfsg-4+b1 libboost-iostreams-dev_1.62.0.1 libboost-iostreams1.62-dev_1.62.0+dfsg-4+b1 libboost-iostreams1.62.0_1.62.0+dfsg-4+b1 libboost-program-options-dev_1.62.0.1 libboost-program-options1.62-dev_1.62.0+dfsg-4+b1 libboost-program-options1.62.0_1.62.0+dfsg-4+b1 libboost-regex1.62-dev_1.62.0+dfsg-4+b1 libboost-regex1.62.0_1.62.0+dfsg-4+b1 libboost-serialization1.62-dev_1.62.0+dfsg-4+b1 libboost-serialization1.62.0_1.62.0+dfsg-4+b1 libboost-system-dev_1.62.0.1 libboost-system1.62-dev_1.62.0+dfsg-4+b1 libboost-system1.62.0_1.62.0+dfsg-4+b1 libboost-thread-dev_1.62.0.1 libboost-thread1.62-dev_1.62.0+dfsg-4+b1 libboost-thread1.62.0_1.62.0+dfsg-4+b1 libboost-timer-dev_1.62.0.1 libboost-timer1.62-dev_1.62.0+dfsg-4+b1 libboost-timer1.62.0_1.62.0+dfsg-4+b1 libboost1.62-dev_1.62.0+dfsg-4+b1 libbsd0_0.8.5-1 libbwa-dev_0.7.15-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-9 libcereal-dev_1.2.1-2 libcilkrts5_7.1.0-9 libclang-common-3.9-dev_1:3.9.1-10 libclang1-3.9_1:3.9.1-10 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcurl3_7.52.1-5 libcurl3-gnutls_7.52.1-5 libdb5.3_5.3.28-12+b1 libdebconfclient0_0.229 libdivsufsort-dev_2.0.1-2 libdivsufsort3_2.0.1-2 libdpkg-perl_1.18.24 libeatmydata1_105-5 libedit2_3.1-20170329-1 libeigen3-dev_3.3.4-2 libexpat1_2.2.1-3 libfakeroot_1.21-3.1 libfdisk1_2.29.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-1 libgcc1_1:7.1.0-9 libgcrypt20_1.7.8-1 libgdbm3_1.8.3-14 libgff-dev_1.0-1+b1 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.13-2 libgomp1_7.1.0-9 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15-1 libhogweed4_3.3-1+b1 libicu-dev_57.1-6 libicu57_57.1-6 libidn2-0_0.16-1+b1 libisl15_0.18-1 libitm1_7.1.0-9 libjellyfish-2.0-2_2.2.6-1+b2 libjellyfish-2.0-dev_2.2.6-1+b2 libjemalloc-dev_3.6.0-9.1 libjemalloc1_3.6.0-9.1 libjs-jquery_3.1.1-2 libjs-modernizr_2.6.2+ds1-1 libjs-sphinxdoc_1.4.9-2 libjs-underscore_1.8.3~dfsg-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libldap-2.4-2_2.4.44+dfsg-7 libldap-common_2.4.44+dfsg-7 libllvm3.9_1:3.9.1-10 liblocale-gettext-perl_1.07-3+b1 liblsan0_7.1.0-9 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.2+b1 liblzo2-2_2.08-1.2+b2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-1 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.1.0-9 libncurses5_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1+b1 libnghttp2-14_1.24.0-1 libobjc-6-dev_6.4.0-1 libobjc4_7.1.0-9 libp11-kit0_0.23.7-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-6 libpipeline1_1.4.1-2 libprocps6_2:3.3.12-3 libpsl5_0.17.0-4+b1 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libquadmath0_7.1.0-9 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-1 libsparsehash-dev_2.0.2-1 libspdlog-dev_1:0.11.0-2 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-3 libstaden-read-dev_1.14.8-2 libstaden-read11_1.14.8-2 libstdc++-6-dev_6.4.0-1 libstdc++6_7.1.0-9 libsystemd0_233-10 libtasn1-6_4.12-2 libtbb-dev_4.3~20150611-2 libtbb2_4.3~20150611-2 libtclap-dev_1.2.1-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libtsan0_7.1.0-9 libubsan0_7.1.0-9 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-1 libuv1_1.9.1-3 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.11.6-1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.29.2-1 multiarch-support_2.24-12 ncurses-base_6.0+20161126-1 ncurses-bin_6.0+20161126-1 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.24.1-6 perl-base_5.24.1-6 perl-modules-5.24_5.24.1-6 pkg-config_0.29-4+b1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.13-2 python-alabaster_0.7.8-1 python-babel_2.4.0+dfsg.1-2 python-babel-localedata_2.4.0+dfsg.1-2 python-docutils_0.13.1+dfsg-2 python-imagesize_0.7.1-1 python-jinja2_2.9.6-1 python-markupsafe_1.0-1+b1 python-minimal_2.7.13-2 python-pkg-resources_36.0.1-1 python-pygments_2.2.0+dfsg-1 python-roman_2.0.0-2 python-six_1.10.0-4 python-sphinx_1.4.9-2 python-sphinx-rtd-theme_0.2.4-1 python-tz_2017.2-2 python2.7_2.7.13-2 python2.7-minimal_2.7.13-2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-salmon-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 sgml-base_1.29 sphinx-common_1.4.9-2 sphinx-doc_1.4.9-2 sphinx-rtd-theme-common_0.2.4-1 sysvinit-utils_2.88dsf-59.9 tar_1.29b-1.1 tzdata_2017b-2 util-linux_2.29.2-1 xml-core_0.17 xz-utils_5.2.2-1.2+b1 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Sep 11 13:54:41 2016 UTC gpgv: using RSA key E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./salmon_0.7.2+ds1-2.dsc dpkg-source: info: extracting salmon in /<>/salmon-0.7.2+ds1 dpkg-source: info: unpacking salmon_0.7.2+ds1.orig.tar.xz dpkg-source: info: unpacking salmon_0.7.2+ds1-2.debian.tar.xz dpkg-source: info: applying dependency-fix dpkg-source: info: applying cmake-typo-fixes dpkg-source: info: applying disable-version-check dpkg-source: info: applying use-system-pkg-config-tbb dpkg-source: info: applying 0007-Remove-unnecessarily-linked-libraries.patch dpkg-source: info: applying 0008-Remove-salmon_core-lib.patch dpkg-source: info: applying 0009-Remove-FIND_PACKAGE-for-liblzma-and-libbz2.patch dpkg-source: info: applying use_debian_packaged_rapmap.patch dpkg-source: info: applying add_MEM_F_SELF_OVLP.patch dpkg-source: info: applying fix-unittest.patch dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-01b022ac-3efb-458b-97c8-f817a1eefe13 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package salmon dpkg-buildpackage: info: source version 0.7.2+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build salmon-0.7.2+ds1 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with sphinxdoc --parallel dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/salmon-0.7.2+ds1' dh_auto_clean rm -f include/RapMap*.h* \ include/Boo???.hpp \ include/IndexHeader.hpp \ include/HitManager.hpp \ include/JFRaw.hpp \ include/SA*.hpp \ include/kseq.h \ include/bit_*.h \ include/rank9b.h \ include/macros.h \ include/SpinLock.hpp \ include/ScopedTimer.hpp \ include/PairAlignmentFormatter.hpp \ include/SingleAlignmentFormatter.hpp rm -f src/bit_array.c \ src/rank9b.cpp \ src/RapMap*.cpp \ src/HitManager.cpp rm -f debian/*.1 rm -Rf sample_data cd doc && /usr/bin/make clean make[2]: Entering directory '/<>/salmon-0.7.2+ds1/doc' rm -rf build/* make[2]: Leaving directory '/<>/salmon-0.7.2+ds1/doc' make[1]: Leaving directory '/<>/salmon-0.7.2+ds1' dh_clean -O--parallel debian/rules build-arch dh build-arch --with sphinxdoc --parallel dh_testdir -a -O--parallel dh_update_autotools_config -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/salmon-0.7.2+ds1' cp -v debian/rapmap/RapMap*.h* \ debian/rapmap/Boo???.hpp \ debian/rapmap/IndexHeader.hpp \ debian/rapmap/HitManager.hpp \ debian/rapmap/JFRaw.hpp \ debian/rapmap/SA*.hpp \ debian/rapmap/kseq.h \ debian/rapmap/SpinLock.hpp \ debian/rapmap/ScopedTimer.hpp \ debian/rapmap/bit_*.h \ debian/rapmap/rank9b.h \ debian/rapmap/macros.h \ debian/rapmap/PairAlignmentFormatter.hpp \ debian/rapmap/SingleAlignmentFormatter.hpp \ include/ 'debian/rapmap/RapMapConfig.hpp' -> 'include/RapMapConfig.hpp' 'debian/rapmap/RapMapFileSystem.hpp' -> 'include/RapMapFileSystem.hpp' 'debian/rapmap/RapMapIndex.hpp' -> 'include/RapMapIndex.hpp' 'debian/rapmap/RapMapSAIndex.hpp' -> 'include/RapMapSAIndex.hpp' 'debian/rapmap/RapMapUtils.hpp' -> 'include/RapMapUtils.hpp' 'debian/rapmap/BooMap.hpp' -> 'include/BooMap.hpp' 'debian/rapmap/BooPHF.hpp' -> 'include/BooPHF.hpp' 'debian/rapmap/IndexHeader.hpp' -> 'include/IndexHeader.hpp' 'debian/rapmap/HitManager.hpp' -> 'include/HitManager.hpp' 'debian/rapmap/JFRaw.hpp' -> 'include/JFRaw.hpp' 'debian/rapmap/SACollector.hpp' -> 'include/SACollector.hpp' 'debian/rapmap/SASearcher.hpp' -> 'include/SASearcher.hpp' 'debian/rapmap/kseq.h' -> 'include/kseq.h' 'debian/rapmap/SpinLock.hpp' -> 'include/SpinLock.hpp' 'debian/rapmap/ScopedTimer.hpp' -> 'include/ScopedTimer.hpp' 'debian/rapmap/bit_array.h' -> 'include/bit_array.h' 'debian/rapmap/bit_macros.h' -> 'include/bit_macros.h' 'debian/rapmap/rank9b.h' -> 'include/rank9b.h' 'debian/rapmap/macros.h' -> 'include/macros.h' 'debian/rapmap/PairAlignmentFormatter.hpp' -> 'include/PairAlignmentFormatter.hpp' 'debian/rapmap/SingleAlignmentFormatter.hpp' -> 'include/SingleAlignmentFormatter.hpp' cp -v debian/rapmap/bit_array.c \ debian/rapmap/rank9b.cpp \ debian/rapmap/RapMap*.cpp \ debian/rapmap/HitManager.cpp \ src/ 'debian/rapmap/bit_array.c' -> 'src/bit_array.c' 'debian/rapmap/rank9b.cpp' -> 'src/rank9b.cpp' 'debian/rapmap/RapMapFileSystem.cpp' -> 'src/RapMapFileSystem.cpp' 'debian/rapmap/RapMapSAIndex.cpp' -> 'src/RapMapSAIndex.cpp' 'debian/rapmap/RapMapSAIndexer.cpp' -> 'src/RapMapSAIndexer.cpp' 'debian/rapmap/RapMapUtils.cpp' -> 'src/RapMapUtils.cpp' 'debian/rapmap/HitManager.cpp' -> 'src/HitManager.cpp' dh_auto_configure cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -- The C compiler identification is Clang 3.9.1 -- The CXX compiler identification is Clang 3.9.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_LIBCPP -- Performing Test HAVE_LIBCPP - Success It appears that you're compiling with clang and that libc++ is available, so I'll use that Making Default build type -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for module 'tbb' -- Found tbb, version 4.3~20150611 -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.62.0 -- Found the following Boost libraries: -- iostreams -- filesystem -- system -- thread -- timer -- program_options -- regex -- chrono -- date_time -- atomic BOOST_INCLUDEDIR = BOOST_LIBRARYDIR = Boost_FOUND = 1 BOOST INCLUDE DIR = /usr/include BOOST INCLUDE DIRS = /usr/include BOOST LIB DIR = /usr/lib/x86_64-linux-gnu BOOST LIBRARIES = /usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_timer.so;/usr/lib/x86_64-linux-gnu/libboost_program_options.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libpthread.so TBB_LIBRARIES = tbb;atomic -- Found Jemalloc: /usr/lib/x86_64-linux-gnu/libjemalloc.so Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = /src/PCA.cpp;/src/PCAUtils.cpp;/build/;/scripts/AggregateToGeneLevel.py;/scripts/ExpressionTools.py;/scripts/GenerateExpressionFiles.sh;/scripts/ParseSoftFile.py;/scripts/PlotCorrelation.py;/scripts/junk;/scripts/sfstrace.log;/scripts/SFPipeline.py;/bin/;/lib/;/sample_data/;PublishREADMEToWebsite.sh;/external/;/src/obsolete/;/include/obsolete/;WebsiteHeader.txt;/experimental_configs/;.git/ TBB_LIBRARIES = tbb;atomic Boost_LIBRARIES = /usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_timer.so;/usr/lib/x86_64-linux-gnu/libboost_program_options.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libpthread.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/salmon-0.7.2+ds1' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/salmon-0.7.2+ds1' dh_auto_build make -j16 make[2]: Entering directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/salmon-0.7.2+ds1 -B/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/CMakeFiles /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/depend make -f src/CMakeFiles/salmon.dir/build.make src/CMakeFiles/salmon.dir/depend make[4]: Entering directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/salmon-0.7.2+ds1 /<>/salmon-0.7.2+ds1/src /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src/CMakeFiles/unitTests.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/salmon-0.7.2+ds1 /<>/salmon-0.7.2+ds1/src /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src/CMakeFiles/salmon.dir/DependInfo.cmake --color= Scanning dependencies of target unitTests make[4]: Leaving directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/build make[4]: Entering directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/unitTests.dir/BWAUtils.cpp.o [ 3%] Building CXX object src/CMakeFiles/unitTests.dir/LibraryFormat.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/BWAUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/BWAUtils.cpp cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/LibraryFormat.cpp.o -c /<>/salmon-0.7.2+ds1/src/LibraryFormat.cpp [ 4%] Building CXX object src/CMakeFiles/unitTests.dir/SBModel.cpp.o [ 6%] Building CXX object src/CMakeFiles/unitTests.dir/FastxParser.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/SBModel.cpp.o -c /<>/salmon-0.7.2+ds1/src/SBModel.cpp cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/FastxParser.cpp.o -c /<>/salmon-0.7.2+ds1/src/FastxParser.cpp [ 8%] Building CXX object src/CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o [ 9%] Building CXX object src/CMakeFiles/unitTests.dir/StadenUtils.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o -c /<>/salmon-0.7.2+ds1/src/FragmentLengthDistribution.cpp [ 11%] Building CXX object src/CMakeFiles/unitTests.dir/SalmonUtils.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/StadenUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/StadenUtils.cpp cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/SalmonUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/SalmonUtils.cpp [ 12%] Building CXX object src/CMakeFiles/unitTests.dir/SimplePosBias.cpp.o [ 14%] Building CXX object src/CMakeFiles/unitTests.dir/DistributionUtils.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/SimplePosBias.cpp.o -c /<>/salmon-0.7.2+ds1/src/SimplePosBias.cpp [ 16%] Building CXX object src/CMakeFiles/unitTests.dir/VersionChecker.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/DistributionUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/DistributionUtils.cpp cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/VersionChecker.cpp.o -c /<>/salmon-0.7.2+ds1/src/VersionChecker.cpp [ 17%] Building C object src/CMakeFiles/unitTests.dir/xxhash.c.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/unitTests.dir/xxhash.c.o -c /<>/salmon-0.7.2+ds1/src/xxhash.c [ 19%] Building CXX object src/CMakeFiles/unitTests.dir/GenomicFeature.cpp.o [ 20%] Building CXX object src/CMakeFiles/unitTests.dir/SalmonStringUtils.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/GenomicFeature.cpp.o -c /<>/salmon-0.7.2+ds1/src/GenomicFeature.cpp cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/SalmonStringUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/SalmonStringUtils.cpp Scanning dependencies of target salmon [ 22%] Building CXX object src/CMakeFiles/unitTests.dir/__/tests/UnitTests.cpp.o make[4]: Leaving directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/salmon.dir/build.make src/CMakeFiles/salmon.dir/build cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/__/tests/UnitTests.cpp.o -c /<>/salmon-0.7.2+ds1/tests/UnitTests.cpp [ 24%] Building CXX object src/CMakeFiles/unitTests.dir/SGSmooth.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/unitTests.dir/SGSmooth.cpp.o -c /<>/salmon-0.7.2+ds1/src/SGSmooth.cpp In file included from /<>/salmon-0.7.2+ds1/src/SBModel.cpp:1: In file included from /<>/salmon-0.7.2+ds1/include/SBModel.hpp:4: /usr/include/boost/iostreams/filtering_stream.hpp:15:10: fatal error: 'memory' file not found #include // allocator. ^ make[4]: Entering directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' In file included from /<>/salmon-0.7.2+ds1/src/DistributionUtils.cpp:1: /<>/salmon-0.7.2+ds1/include/DistributionUtils.hpp:4:10: fatal error: 'cstddef' file not found #include ^ In file included from /<>/salmon-0.7.2+ds1/src/FragmentLengthDistribution.cpp:9: In file included from /<>/salmon-0.7.2+ds1/include/FragmentLengthDistribution.hpp:13: /usr/include/tbb/atomic.h:24:10: fatal error: 'cstddef' file not found #include ^ In file included from /<>/salmon-0.7.2+ds1/src/LibraryFormat.cpp:1: /<>/salmon-0.7.2+ds1/include/LibraryFormat.hpp:4:10: fatal error: 'ostream' file not found #include ^ In file included from /<>/salmon-0.7.2+ds1/src/VersionChecker.cpp:11: /<>/salmon-0.7.2+ds1/include/VersionChecker.hpp:14:10: fatal error: 'iostream' file not found #include ^ In file included from /<>/salmon-0.7.2+ds1/src/SalmonStringUtils.cpp:1: /<>/salmon-0.7.2+ds1/include/SalmonStringUtils.hpp:4:10: fatal error: 'cstdint' file not found #include ^ 1 error generated. 1 error generated. In file included from /<>/salmon-0.7.2+ds1/src/GenomicFeature.cpp:23: In file included from /usr/include/boost/thread/thread.hpp:12: In file included from /usr/include/boost/thread/thread_only.hpp:12: In file included from /usr/include/boost/thread/detail/platform.hpp:14: In file included from /usr/include/boost/config.hpp:44: /usr/include/boost/config/select_stdlib_config.hpp:18:12: fatal error: 'cstddef' file not found # include ^ src/CMakeFiles/unitTests.dir/build.make:89: recipe for target 'src/CMakeFiles/unitTests.dir/LibraryFormat.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/LibraryFormat.cpp.o] Error 1 [ 25%] Building CXX object src/CMakeFiles/salmon.dir/BWAUtils.cpp.o make[4]: *** Waiting for unfinished jobs.... src/CMakeFiles/unitTests.dir/build.make:281: recipe for target 'src/CMakeFiles/unitTests.dir/SalmonStringUtils.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/SalmonStringUtils.cpp.o] Error 1 cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/BWAUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/BWAUtils.cpp In file included from /<>/salmon-0.7.2+ds1/src/FastxParser.cpp:1: /<>/salmon-0.7.2+ds1/include/FastxParser.hpp:6:10: fatal error: 'atomic' file not found #include ^ /<>/salmon-0.7.2+ds1/src/SGSmooth.cpp:18:10: fatal error: 'cstdio' file not found #include ^ 1 error generated. In file included from /<>/salmon-0.7.2+ds1/src/SimplePosBias.cpp:1: In file included from /<>/salmon-0.7.2+ds1/include/SimplePosBias.hpp:4: /<>/salmon-0.7.2+ds1/include/spline.h:30:10: fatal error: 'cstdio' file not found #include ^ src/CMakeFiles/unitTests.dir/build.make:329: recipe for target 'src/CMakeFiles/unitTests.dir/SGSmooth.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/SGSmooth.cpp.o] Error 1 /<>/salmon-0.7.2+ds1/tests/UnitTests.cpp:2:10: fatal error: 'unordered_map' file not found #include ^ 1 error generated. src/CMakeFiles/unitTests.dir/build.make:305: recipe for target 'src/CMakeFiles/unitTests.dir/SimplePosBias.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/SimplePosBias.cpp.o] Error 1 [ 27%] Building CXX object src/CMakeFiles/salmon.dir/VersionChecker.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/VersionChecker.cpp.o -c /<>/salmon-0.7.2+ds1/src/VersionChecker.cpp /<>/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1:10: fatal error: 'algorithm' file not found #include ^ [ 29%] Building CXX object src/CMakeFiles/salmon.dir/GenomicFeature.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/GenomicFeature.cpp.o -c /<>/salmon-0.7.2+ds1/src/GenomicFeature.cpp [ 30%] Building CXX object src/CMakeFiles/salmon.dir/SBModel.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/SBModel.cpp.o -c /<>/salmon-0.7.2+ds1/src/SBModel.cpp [ 32%] Building CXX object src/CMakeFiles/salmon.dir/LibraryFormat.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/LibraryFormat.cpp.o -c /<>/salmon-0.7.2+ds1/src/LibraryFormat.cpp 1 error generated. src/CMakeFiles/unitTests.dir/build.make:185: recipe for target 'src/CMakeFiles/unitTests.dir/FastxParser.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/FastxParser.cpp.o] Error 1 In file included from In file included from /<>/salmon-0.7.2+ds1/src/VersionChecker.cpp/<>/salmon-0.7.2+ds1/src/GenomicFeature.cpp::11: 23: /<>/salmon-0.7.2+ds1/include/VersionChecker.hppIn file included from /usr/include/boost/thread/thread.hpp::1412:: 10In file included from :/usr/include/boost/thread/thread_only.hpp :12fatal error: : In file included from 'iostream' file not found/usr/include/boost/thread/detail/platform.hpp :14: In file included from /usr/include/boost/config.hpp:44: /usr/include/boost/config/select_stdlib_config.hpp:18:12: fatal error: 'cstddef' file not found #include ^ # include ^ In file included from /<>/salmon-0.7.2+ds1/src/StadenUtils.cpp:1: /<>/salmon-0.7.2+ds1/include/StadenUtils.hpp:11:10: fatal error: 'cstdlib' file not found #include ^ 1 error generated. In file included from /<>/salmon-0.7.2+ds1/src/SBModel.cpp:1: In file included from /<>/salmon-0.7.2+ds1/include/SBModel.hpp:4: /usr/include/boost/iostreams/filtering_stream.hpp:15:10: fatal error: 'memory' file not found #include // allocator. ^ [ 33%] Building CXX object src/CMakeFiles/salmon.dir/FastxParser.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/FastxParser.cpp.o -c /<>/salmon-0.7.2+ds1/src/FastxParser.cpp src/CMakeFiles/unitTests.dir/build.make:209: recipe for target 'src/CMakeFiles/unitTests.dir/StadenUtils.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/StadenUtils.cpp.o] Error 1 In file included from /<>/salmon-0.7.2+ds1/src/LibraryFormat.cpp:1: /<>/salmon-0.7.2+ds1/include/LibraryFormat.hpp:4:10: fatal error: 'ostream' file not found #include ^ 1 error generated. src/CMakeFiles/salmon.dir/build.make:89: recipe for target 'src/CMakeFiles/salmon.dir/LibraryFormat.cpp.o' failed make[4]: *** [src/CMakeFiles/salmon.dir/LibraryFormat.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... [ 35%] Building CXX object src/CMakeFiles/salmon.dir/StadenUtils.cpp.o cd /<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/salmon-0.7.2+ds1/include -I/usr/include/eigen3 -I/usr/include/bwa -I/<>/salmon-0.7.2+ds1/external/install/include/jellyfish-2.2.6 -g -O2 -fdebug-prefix-map=/<>/salmon-0.7.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -Ofast -DRAPMAP_SALMON_SUPPORT -DHAVE_ANSI_TERM -DHAVE_SSTREAM -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -std=c++11 -Wreturn-type -Werror=return-type -stdlib=libc++ -DBOOST_HAS_INT128 -Wno-deprecated-register -o CMakeFiles/salmon.dir/StadenUtils.cpp.o -c /<>/salmon-0.7.2+ds1/src/StadenUtils.cpp In file included from /<>/salmon-0.7.2+ds1/src/FastxParser.cpp:1: /<>/salmon-0.7.2+ds1/include/FastxParser.hpp:6:10: fatal error: 'atomic' file not found #include ^ 1 error generated. src/CMakeFiles/salmon.dir/build.make:185: recipe for target 'src/CMakeFiles/salmon.dir/FastxParser.cpp.o' failed make[4]: *** [src/CMakeFiles/salmon.dir/FastxParser.cpp.o] Error 1 In file included from /<>/salmon-0.7.2+ds1/src/StadenUtils.cpp:1: /<>/salmon-0.7.2+ds1/include/StadenUtils.hpp:11:10: fatal error: 'cstdlib' file not found #include ^ 1 error generated. src/CMakeFiles/salmon.dir/build.make:209: recipe for target 'src/CMakeFiles/salmon.dir/StadenUtils.cpp.o' failed make[4]: *** [src/CMakeFiles/salmon.dir/StadenUtils.cpp.o] Error 1 1 error generated. src/CMakeFiles/unitTests.dir/build.make:113: recipe for target 'src/CMakeFiles/unitTests.dir/GenomicFeature.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/GenomicFeature.cpp.o] Error 1 1 error generated. src/CMakeFiles/salmon.dir/build.make:113: recipe for target 'src/CMakeFiles/salmon.dir/GenomicFeature.cpp.o' failed make[4]: *** [src/CMakeFiles/salmon.dir/GenomicFeature.cpp.o] Error 1 1 error generated. src/CMakeFiles/unitTests.dir/build.make:377: recipe for target 'src/CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o] Error 1 1 error generated. src/CMakeFiles/unitTests.dir/build.make:137: recipe for target 'src/CMakeFiles/unitTests.dir/VersionChecker.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/VersionChecker.cpp.o] Error 1 1 error generated. src/CMakeFiles/salmon.dir/build.make:137: recipe for target 'src/CMakeFiles/salmon.dir/VersionChecker.cpp.o' failed make[4]: *** [src/CMakeFiles/salmon.dir/VersionChecker.cpp.o] Error 1 1 error generated. src/CMakeFiles/unitTests.dir/build.make:161: recipe for target 'src/CMakeFiles/unitTests.dir/SBModel.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/SBModel.cpp.o] Error 1 1 error generated. src/CMakeFiles/unitTests.dir/build.make:257: recipe for target 'src/CMakeFiles/unitTests.dir/DistributionUtils.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/DistributionUtils.cpp.o] Error 1 1 error generated. src/CMakeFiles/salmon.dir/build.make:161: recipe for target 'src/CMakeFiles/salmon.dir/SBModel.cpp.o' failed make[4]: *** [src/CMakeFiles/salmon.dir/SBModel.cpp.o] Error 1 make[4]: Leaving directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' CMakeFiles/Makefile2:159: recipe for target 'src/CMakeFiles/salmon.dir/all' failed make[3]: *** [src/CMakeFiles/salmon.dir/all] Error 2 make[3]: *** Waiting for unfinished jobs.... 1 error generated. src/CMakeFiles/unitTests.dir/build.make:353: recipe for target 'src/CMakeFiles/unitTests.dir/__/tests/UnitTests.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/__/tests/UnitTests.cpp.o] Error 1 1 error generated. src/CMakeFiles/unitTests.dir/build.make:233: recipe for target 'src/CMakeFiles/unitTests.dir/SalmonUtils.cpp.o' failed make[4]: *** [src/CMakeFiles/unitTests.dir/SalmonUtils.cpp.o] Error 1 make[4]: Leaving directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' CMakeFiles/Makefile2:122: recipe for target 'src/CMakeFiles/unitTests.dir/all' failed make[3]: *** [src/CMakeFiles/unitTests.dir/all] Error 2 make[3]: Leaving directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' Makefile:163: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/<>/salmon-0.7.2+ds1/obj-x86_64-linux-gnu' dh_auto_build: make -j16 returned exit code 2 debian/rules:38: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/salmon-0.7.2+ds1' debian/rules:12: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-07-06T20:36:17Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 6452 Build-Time: 5 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 19 Job: salmon_0.7.2+ds1-2 Machine Architecture: amd64 Package: salmon Package-Time: 46 Source-Version: 0.7.2+ds1-2 Space: 6452 Status: attempted Version: 0.7.2+ds1-2 -------------------------------------------------------------------------------- Finished at 2017-07-06T20:36:17Z Build needed 00:00:46, 6452k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 47.110773228s DC-Time-Estimation: 47.110773228 versus expected 231 (r/m: 3.9033370537570917 ; m: 47.110773228)