DC-Build-Header: relion 1.4+dfsg-2 / 2017-08-20 18:10:13 +0000 DC-Task: type:rebuild-binarch-only source:relion version:1.4+dfsg-2 chroot:unstable esttime:454 logfile:/tmp/relion_1.4+dfsg-2_unstable_clang5.0.log modes:clang50:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang50 relion_1.4+dfsg-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-43-211.eu-central-1.compute.internal +==============================================================================+ | relion 1.4+dfsg-2 (amd64) Sun, 20 Aug 2017 18:10:13 +0000 | +==============================================================================+ Package: relion Version: 1.4+dfsg-2 Source Version: 1.4+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-bfb14e3d-a780-4415-87bb-2846eb9f1ee9' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang50 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=5.0 + echo 'Install of clang-5.0' Install of clang-5.0 + apt-get update Hit:1 http://127.0.0.1:9999/debian unstable InRelease Get:2 http://127.0.0.1:9999/debian unstable/main Translation-en [5785 kB] Fetched 5785 kB in 1s (3843 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-5.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libasan3 libbsd0 libclang-common-5.0-dev libclang1-5.0 libedit2 libgcc-6-dev libjsoncpp1 libllvm5.0 libncurses5 libobjc-6-dev libobjc4 libstdc++-6-dev Suggested packages: gnustep gnustep-devel clang-5.0-doc libomp-dev libstdc++-6-doc Recommended packages: llvm-5.0-dev python libgpm2 The following NEW packages will be installed: clang-5.0 libasan3 libbsd0 libclang-common-5.0-dev libclang1-5.0 libedit2 libgcc-6-dev libjsoncpp1 libllvm5.0 libncurses5 libobjc-6-dev libobjc4 libstdc++-6-dev 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 88.4 MB of archives. After this operation, 376 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.6-1 [90.3 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.0+20170715-2 [93.8 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libllvm5.0 amd64 1:5.0~+rc2-1 [13.5 MB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-5.0 amd64 1:5.0~+rc2-1 [6729 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libasan3 amd64 6.4.0-3 [311 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libgcc-6-dev amd64 6.4.0-3 [2296 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libstdc++-6-dev amd64 6.4.0-3 [1421 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 7.2.0-1 [51.0 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-6-dev amd64 6.4.0-3 [197 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-5.0-dev amd64 1:5.0~+rc2-1 [1989 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-5.0 amd64 1:5.0~+rc2-1 [61.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.4 MB in 0s (96.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 9822 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.6-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../01-libncurses5_6.0+20170715-2_amd64.deb ... Unpacking libncurses5:amd64 (6.0+20170715-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../02-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm5.0:amd64. Preparing to unpack .../03-libllvm5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libllvm5.0:amd64 (1:5.0~+rc2-1) ... Selecting previously unselected package libclang1-5.0:amd64. Preparing to unpack .../04-libclang1-5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libclang1-5.0:amd64 (1:5.0~+rc2-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../05-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libasan3:amd64. Preparing to unpack .../06-libasan3_6.4.0-3_amd64.deb ... Unpacking libasan3:amd64 (6.4.0-3) ... Selecting previously unselected package libgcc-6-dev:amd64. Preparing to unpack .../07-libgcc-6-dev_6.4.0-3_amd64.deb ... Unpacking libgcc-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libstdc++-6-dev:amd64. Preparing to unpack .../08-libstdc++-6-dev_6.4.0-3_amd64.deb ... Unpacking libstdc++-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../09-libobjc4_7.2.0-1_amd64.deb ... Unpacking libobjc4:amd64 (7.2.0-1) ... Selecting previously unselected package libobjc-6-dev:amd64. Preparing to unpack .../10-libobjc-6-dev_6.4.0-3_amd64.deb ... Unpacking libobjc-6-dev:amd64 (6.4.0-3) ... Selecting previously unselected package libclang-common-5.0-dev. Preparing to unpack .../11-libclang-common-5.0-dev_1%3a5.0~+rc2-1_amd64.deb ... Unpacking libclang-common-5.0-dev (1:5.0~+rc2-1) ... Selecting previously unselected package clang-5.0. Preparing to unpack .../12-clang-5.0_1%3a5.0~+rc2-1_amd64.deb ... Unpacking clang-5.0 (1:5.0~+rc2-1) ... Setting up libncurses5:amd64 (6.0+20170715-2) ... Setting up libobjc4:amd64 (7.2.0-1) ... Setting up libasan3:amd64 (6.4.0-3) ... Setting up libgcc-6-dev:amd64 (6.4.0-3) ... Setting up libstdc++-6-dev:amd64 (6.4.0-3) ... Setting up libbsd0:amd64 (0.8.6-1) ... Processing triggers for libc-bin (2.24-14) ... Setting up libobjc-6-dev:amd64 (6.4.0-3) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm5.0:amd64 (1:5.0~+rc2-1) ... Setting up libclang1-5.0:amd64 (1:5.0~+rc2-1) ... Setting up libclang-common-5.0-dev (1:5.0~+rc2-1) ... Setting up clang-5.0 (1:5.0~+rc2-1) ... Processing triggers for libc-bin (2.24-14) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-5.0 g++-4.6 + ln -s clang-5.0 gcc-4.6 + ln -s clang-5.0 cpp-4.6 + ln -s clang-5.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-5.0 g++-4.7 + ln -s clang-5.0 gcc-4.7 + ln -s clang-5.0 cpp-4.7 + ln -s clang-5.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-5.0 g++-4.8 + ln -s clang-5.0 gcc-4.8 + ln -s clang-5.0 cpp-4.8 + ln -s clang-5.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-5.0 g++-4.9 + ln -s clang-5.0 gcc-4.9 + ln -s clang-5.0 cpp-4.9 + ln -s clang-5.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-5.0 g++-5 + ln -s clang-5.0 gcc-5 + ln -s clang-5.0 cpp-5 + ln -s clang-5.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-5.0 g++-6 + ln -s clang-5.0 gcc-6 + ln -s clang-5.0 cpp-6 + ln -s clang-5.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-5.0 g++-7 + ln -s clang-5.0 gcc-7 + ln -s clang-5.0 cpp-7 + ln -s clang-5.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + cd - /build/relion-cabRMp + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang50'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'relion' packaging is maintained in the 'Git' version control system at: git://anonscm.debian.org/debian-med/relion.git Please use: git clone git://anonscm.debian.org/debian-med/relion.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 560 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main relion 1.4+dfsg-2 (dsc) [3043 B] Get:2 http://127.0.0.1:9999/debian unstable/main relion 1.4+dfsg-2 (tar) [548 kB] Get:3 http://127.0.0.1:9999/debian unstable/main relion 1.4+dfsg-2 (diff) [8292 B] Fetched 560 kB in 0s (3059 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/relion-cabRMp/relion-1.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/relion-cabRMp' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-flX9r4/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-flX9r4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-flX9r4/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-flX9r4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-flX9r4/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-flX9r4/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 784 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-flX9r4/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [784 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 784 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 11331 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in i386 amd64 all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec (>= 0.3), libfltk1.3-dev, libfftw3-dev, libopenmpi-dev Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec (>= 0.3), libfltk1.3-dev, libfftw3-dev, libopenmpi-dev dpkg-deb: building package 'sbuild-build-depends-relion-dummy' in '/<>/resolver-flX9r4/apt_archive/sbuild-build-depends-relion-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-relion-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-flX9r4/apt_archive ./ InRelease Get:2 copy:/<>/resolver-flX9r4/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-flX9r4/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-flX9r4/apt_archive ./ Sources [530 B] Get:5 copy:/<>/resolver-flX9r4/apt_archive ./ Packages [609 B] Fetched 2102 B in 0s (0 B/s) Reading package lists... Reading package lists... Install relion build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcairo2 libcroco3 libdrm-common libdrm2 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3 libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg62-turbo libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpixman-1-0 libpng16-16 libpsm-infinipath1 libpthread-stubs0-dev librdmacm1 libsigsegv2 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf ucf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libfftw3-doc fltk1.3-doc libcairo2-dev libjpeg-dev libpng-dev libxext-dev libxft-dev libxinerama-dev zlib1g-dev | libz-dev libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk libxcb-doc m4-doc less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl fluid libgl1-mesa-dev | libgl-dev libglu1-mesa-dev | libglu-dev libgl1-mesa-dri libglib2.0-data shared-mime-info xdg-user-dirs openmpi-bin libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcairo2 libcroco3 libdrm-common libdrm2 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3 libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1 libfreetype6 libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg62-turbo libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1 libpixman-1-0 libpng16-16 libpsm-infinipath1 libpthread-stubs0-dev librdmacm1 libsigsegv2 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db ocl-icd-libopencl1 openmpi-common po-debconf sbuild-build-depends-relion-dummy ucf x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 138 MB of additional disk space will be used. Get:1 copy:/<>/resolver-flX9r4/apt_archive ./ sbuild-build-depends-relion-dummy 0.invalid.0 [824 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-9 [1160 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 9.0.12+nmu1 [186 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.4.2-1 [28.3 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.7.6.1-2 [1044 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.31-1 [223 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.31-1 [112 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.31-1 [64.2 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-2+b1 [122 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-6 [7701 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-3 [715 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.11-1 [29.9 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-10 [338 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20161112.1 [73.4 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-2 [736 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-2 [433 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2 [545 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 14 [15.9 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.59-1 [95.5 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.038-1 [11.1 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.53.4-3 [2796 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-1 [144 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-2+b1 [1301 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 10.7.2 [975 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 dh-exec amd64 0.23+b1 [26.7 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.12.3-0.2 [304 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.3-1 [87.5 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.31-1 [284 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8-0.2 [449 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.12.3-0.2 [366 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.34.0-1 [530 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.12-1 [133 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.4-3 [290 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.4-3 [747 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.12-1 [105 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.12-1 [95.9 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.14.10-1 [774 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-common all 2.4.82-1 [13.0 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libdrm2 amd64 2.4.82-1 [38.8 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 1.2.1-2 [39.3 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [169 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 librdmacm1 amd64 1.1.0-2 [49.4 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libfabric1 amd64 1.4.0-1 [259 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-double3 amd64 3.3.6p2-1 [732 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-long3 amd64 3.3.6p2-1 [315 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.6p2-1 [556 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-single3 amd64 3.3.6p2-1 [764 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-bin amd64 3.3.6p2-1 [50.1 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-dev amd64 3.3.6p2-1 [2123 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libxcursor1 amd64 1:1.1.14-1+b4 [35.0 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libxft2 amd64 2.3.2-1+b2 [56.5 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libfltk1.3 amd64 1.3.4-6 [551 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-cairo1.3 amd64 1.3.4-6 [40.1 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-forms1.3 amd64 1.3.4-6 [46.5 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libglapi-mesa amd64 17.1.5-1 [59.8 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.4-3 [183 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri2-0 amd64 1.12-1 [97.2 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri3-0 amd64 1.12-1 [95.6 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-glx0 amd64 1.12-1 [113 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-present0 amd64 1.12-1 [95.8 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-sync1 amd64 1.12-1 [99.2 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-xfixes0 amd64 1.12-1 [99.6 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libxdamage1 amd64 1:1.1.4-2+b3 [14.5 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libxshmfence1 amd64 1.2-1+b2 [7922 B] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libgl1-mesa-glx amd64 17.1.5-1 [168 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-gl1.3 amd64 1.3.4-6 [71.6 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.1-2 [134 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-images1.3 amd64 1.3.4-6 [59.2 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 7.0.31-1 [728 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-input-dev all 2.3.2-1 [158 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-kb-dev all 1.0.7-1 [233 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.12-1 [169 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.4-3 [815 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libfltk1.3-dev amd64 1.3.4-6 [831 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran3 amd64 6.4.0-3 [266 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2 [389 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-2.1 [33.3 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.5-1 [105 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-2.1 [46.0 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2 [161 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.5-1 [167 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.13.4-1+b2 [50.0 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1 [36.8 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.5-1 [16.1 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 1.2.1-2 [107 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi2 amd64 2.1.1-6 [2062 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 2.1.1-6 [154 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 2.1.1-6 [1026 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 0s (97.6 MB/s) Selecting previously unselected package groff-base. (Reading database ... 11331 files and directories currently installed.) Preparing to unpack .../000-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../002-libpipeline1_1.4.2-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../003-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.31-1_amd64.deb ... Unpacking libmagic-mgc (1:5.31-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.31-1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.31-1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.31-1_amd64.deb ... Unpacking file (1:5.31-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.19.8.1-2+b1_amd64.deb ... Unpacking gettext-base (0.19.8.1-2+b1) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../008-libicu57_57.1-6_amd64.deb ... Unpacking libicu57:amd64 (57.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../009-libxml2_2.9.4+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-3) ... Selecting previously unselected package ucf. Preparing to unpack .../010-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../011-libsigsegv2_2.11-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.18-1_amd64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.15.1-2_all.deb ... Unpacking automake (1:1.15.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.19.8.1-2_all.deb ... Unpacking autopoint (0.19.8.1-2) ... Selecting previously unselected package libtool. Preparing to unpack .../017-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../018-dh-autoreconf_14_all.deb ... Unpacking dh-autoreconf (14) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../019-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../020-libfile-stripnondeterminism-perl_0.038-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.038-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../021-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_0.038-1_all.deb ... Unpacking dh-strip-nondeterminism (0.038-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../023-libglib2.0-0_2.53.4-3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.53.4-3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../024-libcroco3_0.6.12-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-1) ... Selecting previously unselected package gettext. Preparing to unpack .../025-gettext_0.19.8.1-2+b1_amd64.deb ... Unpacking gettext (0.19.8.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../026-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../027-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../028-debhelper_10.7.2_all.deb ... Unpacking debhelper (10.7.2) ... Selecting previously unselected package dh-exec. Preparing to unpack .../029-dh-exec_0.23+b1_amd64.deb ... Unpacking dh-exec (0.23+b1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../030-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../031-fontconfig-config_2.12.3-0.2_all.deb ... Unpacking fontconfig-config (2.12.3-0.2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../032-libexpat1_2.2.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.3-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../033-libpng16-16_1.6.31-1_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.31-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../034-libfreetype6_2.8-0.2_amd64.deb ... Unpacking libfreetype6:amd64 (2.8-0.2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../035-libfontconfig1_2.12.3-0.2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.12.3-0.2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../036-libpixman-1-0_0.34.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.34.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../037-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../038-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../039-libxcb1_1.12-1_amd64.deb ... Unpacking libxcb1:amd64 (1.12-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../040-libx11-data_2%3a1.6.4-3_all.deb ... Unpacking libx11-data (2:1.6.4-3) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../041-libx11-6_2%3a1.6.4-3_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.4-3) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../042-libxcb-render0_1.12-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../043-libxcb-shm0_1.12-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.12-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../044-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../045-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../046-libcairo2_1.14.10-1_amd64.deb ... Unpacking libcairo2:amd64 (1.14.10-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../047-libdrm-common_2.4.82-1_all.deb ... Unpacking libdrm-common (2.4.82-1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../048-libdrm2_2.4.82-1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.82-1) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../049-libnl-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../050-libnl-route-3-200_3.2.27-2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.2.27-2) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../051-libibverbs1_1.2.1-2_amd64.deb ... Unpacking libibverbs1 (1.2.1-2) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../052-libpsm-infinipath1_3.3+19.g67c0807.open-3_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Selecting previously unselected package librdmacm1. Preparing to unpack .../053-librdmacm1_1.1.0-2_amd64.deb ... Unpacking librdmacm1 (1.1.0-2) ... Selecting previously unselected package libfabric1. Preparing to unpack .../054-libfabric1_1.4.0-1_amd64.deb ... Unpacking libfabric1 (1.4.0-1) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../055-libfftw3-double3_3.3.6p2-1_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.6p2-1) ... Selecting previously unselected package libfftw3-long3:amd64. Preparing to unpack .../056-libfftw3-long3_3.3.6p2-1_amd64.deb ... Unpacking libfftw3-long3:amd64 (3.3.6p2-1) ... Selecting previously unselected package libfftw3-quad3:amd64. Preparing to unpack .../057-libfftw3-quad3_3.3.6p2-1_amd64.deb ... Unpacking libfftw3-quad3:amd64 (3.3.6p2-1) ... Selecting previously unselected package libfftw3-single3:amd64. Preparing to unpack .../058-libfftw3-single3_3.3.6p2-1_amd64.deb ... Unpacking libfftw3-single3:amd64 (3.3.6p2-1) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../059-libfftw3-bin_3.3.6p2-1_amd64.deb ... Unpacking libfftw3-bin (3.3.6p2-1) ... Selecting previously unselected package libfftw3-dev:amd64. Preparing to unpack .../060-libfftw3-dev_3.3.6p2-1_amd64.deb ... Unpacking libfftw3-dev:amd64 (3.3.6p2-1) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../061-libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) ... Selecting previously unselected package libxcursor1:amd64. Preparing to unpack .../062-libxcursor1_1%3a1.1.14-1+b4_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.1.14-1+b4) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../063-libxft2_2.3.2-1+b2_amd64.deb ... Unpacking libxft2:amd64 (2.3.2-1+b2) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../064-libxinerama1_2%3a1.1.3-1+b3_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.3-1+b3) ... Selecting previously unselected package libfltk1.3:amd64. Preparing to unpack .../065-libfltk1.3_1.3.4-6_amd64.deb ... Unpacking libfltk1.3:amd64 (1.3.4-6) ... Selecting previously unselected package libfltk-cairo1.3:amd64. Preparing to unpack .../066-libfltk-cairo1.3_1.3.4-6_amd64.deb ... Unpacking libfltk-cairo1.3:amd64 (1.3.4-6) ... Selecting previously unselected package libfltk-forms1.3:amd64. Preparing to unpack .../067-libfltk-forms1.3_1.3.4-6_amd64.deb ... Unpacking libfltk-forms1.3:amd64 (1.3.4-6) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../068-libglapi-mesa_17.1.5-1_amd64.deb ... Unpacking libglapi-mesa:amd64 (17.1.5-1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../069-libx11-xcb1_2%3a1.6.4-3_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.6.4-3) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../070-libxcb-dri2-0_1.12-1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../071-libxcb-dri3-0_1.12-1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../072-libxcb-glx0_1.12-1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../073-libxcb-present0_1.12-1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.12-1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../074-libxcb-sync1_1.12-1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.12-1) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../075-libxcb-xfixes0_1.12-1_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.12-1) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../076-libxdamage1_1%3a1.1.4-2+b3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-2+b3) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../077-libxshmfence1_1.2-1+b2_amd64.deb ... Unpacking libxshmfence1:amd64 (1.2-1+b2) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../078-libxxf86vm1_1%3a1.1.4-1+b2_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Selecting previously unselected package libgl1-mesa-glx:amd64. Preparing to unpack .../079-libgl1-mesa-glx_17.1.5-1_amd64.deb ... Unpacking libgl1-mesa-glx:amd64 (17.1.5-1) ... Selecting previously unselected package libfltk-gl1.3:amd64. Preparing to unpack .../080-libfltk-gl1.3_1.3.4-6_amd64.deb ... Unpacking libfltk-gl1.3:amd64 (1.3.4-6) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../081-libjpeg62-turbo_1%3a1.5.1-2_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.1-2) ... Selecting previously unselected package libfltk-images1.3:amd64. Preparing to unpack .../082-libfltk-images1.3_1.3.4-6_amd64.deb ... Unpacking libfltk-images1.3:amd64 (1.3.4-6) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../083-xorg-sgml-doctools_1%3a1.11-1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../084-x11proto-core-dev_7.0.31-1_all.deb ... Unpacking x11proto-core-dev (7.0.31-1) ... Selecting previously unselected package libxau-dev:amd64. Preparing to unpack .../085-libxau-dev_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau-dev:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp-dev:amd64. Preparing to unpack .../086-libxdmcp-dev_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp-dev:amd64 (1:1.1.2-3) ... Selecting previously unselected package x11proto-input-dev. Preparing to unpack .../087-x11proto-input-dev_2.3.2-1_all.deb ... Unpacking x11proto-input-dev (2.3.2-1) ... Selecting previously unselected package x11proto-kb-dev. Preparing to unpack .../088-x11proto-kb-dev_1.0.7-1_all.deb ... Unpacking x11proto-kb-dev (1.0.7-1) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../089-xtrans-dev_1.3.5-1_all.deb ... Unpacking xtrans-dev (1.3.5-1) ... Selecting previously unselected package libpthread-stubs0-dev:amd64. Preparing to unpack .../090-libpthread-stubs0-dev_0.3-4_amd64.deb ... Unpacking libpthread-stubs0-dev:amd64 (0.3-4) ... Selecting previously unselected package libxcb1-dev:amd64. Preparing to unpack .../091-libxcb1-dev_1.12-1_amd64.deb ... Unpacking libxcb1-dev:amd64 (1.12-1) ... Selecting previously unselected package libx11-dev:amd64. Preparing to unpack .../092-libx11-dev_2%3a1.6.4-3_amd64.deb ... Unpacking libx11-dev:amd64 (2:1.6.4-3) ... Selecting previously unselected package libfltk1.3-dev. Preparing to unpack .../093-libfltk1.3-dev_1.3.4-6_amd64.deb ... Unpacking libfltk1.3-dev (1.3.4-6) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../094-libgfortran3_6.4.0-3_amd64.deb ... Unpacking libgfortran3:amd64 (6.4.0-3) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../095-libltdl7_2.4.6-2_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-2) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../096-libnuma1_2.0.11-2.1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.11-2.1) ... Selecting previously unselected package libhwloc5:amd64. Preparing to unpack .../097-libhwloc5_1.11.5-1_amd64.deb ... Unpacking libhwloc5:amd64 (1.11.5-1) ... Selecting previously unselected package libnuma-dev:amd64. Preparing to unpack .../098-libnuma-dev_2.0.11-2.1_amd64.deb ... Unpacking libnuma-dev:amd64 (2.0.11-2.1) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../099-libltdl-dev_2.4.6-2_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.6-2) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../100-libhwloc-dev_1.11.5-1_amd64.deb ... Unpacking libhwloc-dev:amd64 (1.11.5-1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../101-libpciaccess0_0.13.4-1+b2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.13.4-1+b2) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../102-ocl-icd-libopencl1_2.2.11-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../103-libhwloc-plugins_1.11.5-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.5-1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../104-libibverbs-dev_1.2.1-2_amd64.deb ... Unpacking libibverbs-dev (1.2.1-2) ... Selecting previously unselected package libopenmpi2:amd64. Preparing to unpack .../105-libopenmpi2_2.1.1-6_amd64.deb ... Unpacking libopenmpi2:amd64 (2.1.1-6) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../106-openmpi-common_2.1.1-6_all.deb ... Unpacking openmpi-common (2.1.1-6) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../107-libopenmpi-dev_2.1.1-6_amd64.deb ... Unpacking libopenmpi-dev (2.1.1-6) ... Selecting previously unselected package sbuild-build-depends-relion-dummy. Preparing to unpack .../108-sbuild-build-depends-relion-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-relion-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.3-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.1-2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libpng16-16:amd64 (1.6.31-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libnuma1:amd64 (2.0.11-2.1) ... Setting up libgfortran3:amd64 (6.4.0-3) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.53.4-3) ... No schema files found: doing nothing. Setting up libxshmfence1:amd64 (1.2-1+b2) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up gettext-base (0.19.8.1-2+b1) ... Setting up libpipeline1:amd64 (1.4.2-1) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up libglapi-mesa:amd64 (17.1.5-1) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:amd64 (3.3.6p2-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3) ... Setting up libfreetype6:amd64 (2.8-0.2) ... Setting up libmagic-mgc (1:5.31-1) ... Setting up libmagic1:amd64 (1:5.31-1) ... Setting up libdrm-common (2.4.82-1) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up libfftw3-quad3:amd64 (3.3.6p2-1) ... Setting up libx11-xcb1:amd64 (2:1.6.4-3) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up openmpi-common (2.1.1-6) ... Processing triggers for libc-bin (2.24-14) ... Setting up autotools-dev (20161112.1) ... Setting up libltdl7:amd64 (2.4.6-2) ... Setting up libpciaccess0:amd64 (0.13.4-1+b2) ... Setting up libfftw3-single3:amd64 (3.3.6p2-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libnuma-dev:amd64 (2.0.11-2.1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libfftw3-long3:amd64 (3.3.6p2-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libfftw3-bin (3.3.6p2-1) ... Setting up fontconfig-config (2.12.3-0.2) ... Setting up x11proto-core-dev (7.0.31-1) ... Setting up libltdl-dev:amd64 (2.4.6-2) ... Setting up gettext (0.19.8.1-2+b1) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.31-1) ... Setting up libhwloc5:amd64 (1.11.5-1) ... Setting up libdrm2:amd64 (2.4.82-1) ... Setting up libhwloc-plugins (1.11.5-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libfftw3-dev:amd64 (3.3.6p2-1) ... Setting up automake (1:1.15.1-2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:amd64 (1.12-1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libtool (2.4.6-2) ... Setting up libibverbs1 (1.2.1-2) ... Setting up libxcb-present0:amd64 (1.12-1) ... Setting up libfontconfig1:amd64 (2.12.3-0.2) ... Setting up libxcb-dri2-0:amd64 (1.12-1) ... Setting up libxcb-dri3-0:amd64 (1.12-1) ... Setting up libxcb-glx0:amd64 (1.12-1) ... Setting up libxcb-xfixes0:amd64 (1.12-1) ... Setting up libxcb-render0:amd64 (1.12-1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:amd64 (1.11.5-1) ... Setting up libx11-6:amd64 (2:1.6.4-3) ... Setting up librdmacm1 (1.1.0-2) ... Setting up libxcb-sync1:amd64 (1.12-1) ... Setting up libxcb-shm0:amd64 (1.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxcb1-dev:amd64 (1.12-1) ... Setting up libx11-dev:amd64 (2:1.6.4-3) ... Setting up libxft2:amd64 (2.3.2-1+b2) ... Setting up libibverbs-dev (1.2.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libfabric1 (1.4.0-1) ... Setting up libxcursor1:amd64 (1:1.1.14-1+b4) ... Setting up libopenmpi2:amd64 (2.1.1-6) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libcairo2:amd64 (1.14.10-1) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libxdamage1:amd64 (1:1.1.4-2+b3) ... Setting up libopenmpi-dev (2.1.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libgl1-mesa-glx:amd64 (17.1.5-1) ... Setting up libfltk1.3:amd64 (1.3.4-6) ... Setting up libfltk-images1.3:amd64 (1.3.4-6) ... Setting up libfltk-forms1.3:amd64 (1.3.4-6) ... Setting up libfltk-gl1.3:amd64 (1.3.4-6) ... Setting up libfltk-cairo1.3:amd64 (1.3.4-6) ... Setting up libfltk1.3-dev (1.3.4-6) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up debhelper (10.7.2) ... Setting up dh-autoreconf (14) ... Setting up dh-exec (0.23+b1) ... Setting up sbuild-build-depends-relion-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-2-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.29-4 dpkg-dev_1.18.24 g++-7_7.2.0-1 gcc-7_7.2.0-1 libc6-dev_2.24-14 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 linux-libc-dev_4.12.6-1 Package versions: adduser_3.116 apt_1.5~beta2 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-4 build-essential_12.3 bzip2_1.0.6-8.1 clang-5.0_1:5.0~+rc2-1 coreutils_8.26-3 cpp_4:7.1.0-2 cpp-7_7.2.0-1 dash_0.5.8-2.5 debconf_1.5.63 debfoster_2.7-2.1+b1 debhelper_10.7.2 debian-archive-keyring_2017.5 debianutils_4.8.2 dh-autoreconf_14 dh-exec_0.23+b1 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 eatmydata_105-5 fakeroot_1.22-1 fdisk_2.29.2-4 file_1:5.31-1 findutils_4.6.0+git+20170729-2 fontconfig-config_2.12.3-0.2 fonts-dejavu-core_2.37-1 g++_4:7.1.0-2 g++-7_7.2.0-1 gcc_4:7.1.0-2 gcc-6-base_6.4.0-3 gcc-7_7.2.0-1 gcc-7-base_7.2.0-1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.49 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta2 libarchive-zip-perl_1.59-1 libasan3_6.4.0-3 libasan4_7.2.0-1 libatomic1_7.2.0-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b2 libblkid1_2.29.2-4 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcairo2_1.14.10-1 libcap-ng0_0.7.7-3+b1 libcc1-0_7.2.0-1 libcilkrts5_7.2.0-1 libclang-common-5.0-dev_1:5.0~+rc2-1 libclang1-5.0_1:5.0~+rc2-1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libdb5.3_5.3.28-13 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1 libdrm2_2.4.82-1 libeatmydata1_105-5 libedit2_3.1-20170329-1 libexpat1_2.2.3-1 libfabric1_1.4.0-1 libfakeroot_1.22-1 libfdisk1_2.29.2-4 libffi6_3.2.1-6 libfftw3-bin_3.3.6p2-1 libfftw3-dev_3.3.6p2-1 libfftw3-double3_3.3.6p2-1 libfftw3-long3_3.3.6p2-1 libfftw3-quad3_3.3.6p2-1 libfftw3-single3_3.3.6p2-1 libfile-stripnondeterminism-perl_0.038-1 libfltk-cairo1.3_1.3.4-6 libfltk-forms1.3_1.3.4-6 libfltk-gl1.3_1.3.4-6 libfltk-images1.3_1.3.4-6 libfltk1.3_1.3.4-6 libfltk1.3-dev_1.3.4-6 libfontconfig1_2.12.3-0.2 libfreetype6_2.8-0.2 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.4.0-3 libgcc-7-dev_7.2.0-1 libgcc1_1:7.2.0-1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libgfortran3_6.4.0-3 libgl1-mesa-glx_17.1.5-1 libglapi-mesa_17.1.5-1 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-3 libgomp1_7.2.0-1 libgpg-error0_1.27-3 libhogweed4_3.3-1+b1 libhwloc-dev_1.11.5-1 libhwloc-plugins_1.11.5-1 libhwloc5_1.11.5-1 libibverbs-dev_1.2.1-2 libibverbs1_1.2.1-2 libicu57_57.1-6 libidn2-0_2.0.2-3 libisl15_0.18-1 libitm1_7.2.0-1 libjpeg62-turbo_1:1.5.1-2 libjsoncpp1_1.7.4-3 libllvm5.0_1:5.0~+rc2-1 liblsan0_7.2.0-1 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-4 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx2_7.2.0-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1+b1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnuma-dev_2.0.11-2.1 libnuma1_2.0.11-2.1 libobjc-6-dev_6.4.0-3 libobjc4_7.2.0-1 libopenmpi-dev_2.1.1-6 libopenmpi2_2.1.1-6 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1+b2 libpcre3_2:8.39-4 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libpng16-16_1.6.31-1 libpsm-infinipath1_3.3+19.g67c0807.open-3 libpthread-stubs0-dev_0.3-4 libquadmath0_7.2.0-1 librdmacm1_1.1.0-2 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-4 libss2_1.43.5-1 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libtsan0_7.2.0-1 libubsan0_7.2.0-1 libudev1_234-2 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-4 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libx11-dev_2:1.6.4-3 libx11-xcb1_2:1.6.4-3 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.12-1 libxcb-dri3-0_1.12-1 libxcb-glx0_1.12-1 libxcb-present0_1.12-1 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb-sync1_1.12-1 libxcb-xfixes0_1.12-1 libxcb1_1.12-1 libxcb1-dev_1.12-1 libxcursor1_1:1.1.14-1+b4 libxdamage1_1:1.1.4-2+b3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-1 libxft2_2.3.2-1+b2 libxinerama1_2:1.1.3-1+b3 libxml2_2.9.4+dfsg1-3 libxrender1_1:0.9.10-1 libxshmfence1_1.2-1+b2 libxxf86vm1_1:1.1.4-1+b2 linux-libc-dev_4.12.6-1 login_1:4.4-4.1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-4 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 ocl-icd-libopencl1_2.2.11-1 openmpi-common_2.1.1-6 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.26_5.26.0-5 po-debconf_1.0.20 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-relion-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 ucf_3.0036 util-linux_2.29.2-4 x11proto-core-dev_7.0.31-1 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 29 19:09:44 2016 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./relion_1.4+dfsg-2.dsc dpkg-source: info: extracting relion in /<>/relion-1.4+dfsg dpkg-source: info: unpacking relion_1.4+dfsg.orig.tar.xz dpkg-source: info: unpacking relion_1.4+dfsg-2.debian.tar.xz dpkg-source: info: applying 0001-Fix-fltk-config-path-in-configure.patch dpkg-source: info: applying 0002-Add-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch dpkg-source: info: applying 0003-Add-enable-gui-flag-to-configure.patch dpkg-source: info: applying 0004-Fix-fltk-header-includes.patch dpkg-source: info: applying 0005-gcc-6.patch dpkg-source: info: applying 0006-correct-copy-overflow.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-bfb14e3d-a780-4415-87bb-2846eb9f1ee9 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package relion dpkg-buildpackage: info: source version 1.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Gert Wollny dpkg-source --before-build relion-1.4+dfsg dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz fakeroot debian/rules clean Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh clean --parallel --with autoreconf dh_auto_clean -O--parallel dh_autoreconf_clean -O--parallel dh_clean -O--parallel debian/rules build-arch Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh build-arch --parallel --with autoreconf dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:16: installing './compile' configure.ac:4: installing './missing' /usr/share/automake-1.15/am/ltlibrary.am: warning: 'librelion-@RELION_API_VERSION@.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.15/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' Makefile.am:44: while processing Libtool library 'librelion-@RELION_API_VERSION@.la' Makefile.am: installing './depcomp' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # We need to build 4 different versions for the 4 different binary # packages. This is necessary because unfortunately the binaries work # only with the exact same librelion they were built with. # First no MPI, no GUI (for relion-bin) ... dh_auto_configure -- --libdir=\${prefix}/lib/x86_64-linux-gnu --disable-gui ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/x86_64-linux-gnu --disable-gui configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j16; make install prefix=/<>/relion-1.4+dfsg/debian/tmp/simple/usr make[2]: Entering directory '/<>/relion-1.4+dfsg' make all-am make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/fftw.lo src/fftw.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/filename.lo src/filename.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/funcs.lo src/funcs.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/healpix_sampling.lo src/healpix_sampling.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/image.lo src/image.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/mask.lo src/mask.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -fPIC -DPIC -o src/.libs/funcs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -fPIC -DPIC -o src/.libs/healpix_sampling.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -fPIC -DPIC -o src/.libs/filename.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -fPIC -DPIC -o src/.libs/fftw.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -fPIC -DPIC -o src/.libs/mask.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/image.cpp -fPIC -DPIC -o src/.libs/image.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 src/args.cpp:104:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ src/assembly.cpp:356:33: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ^~~~~~~ In file included from src/euler.cpp:48: In file included from ./src/euler.h:48: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/backprojector.cpp:27: In file included from ./src/backprojector.h:31: In file included from ./src/projector.h:23: In file included from ./src/fftw.h:50: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/ctf.cpp:45: In file included from ./src/ctf.h:48: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/exp_model.cpp:20: In file included from ./src/exp_model.h:24: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/fftw.cpp:46: In file included from ./src/fftw.h:50: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/image.cpp:20: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: In file included from src/ctffind_runner.cpp:20: In file included from ./src/ctffind_runner.h:30: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/mask.cpp:20: In file included from ./src/mask.h:24: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/healpix_sampling.cpp:20: In file included from ./src/healpix_sampling.h:27: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/backprojector.cpp:27: In file included from ./src/backprojector.h:31: In file included from ./src/projector.h:25: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ In file included from src/ctffind_runner.cpp:20: In file included from ./src/ctffind_runner.h:30: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix1d.lo src/matrix1d.cpp In file included from src/exp_model.cpp:20: In file included from ./src/exp_model.h:24: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == src/ctffind_runner.cpp:237:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system ( fn_cmnd.c_str() ); ^~~~~~ ~~~~~~~~~~~~~~~ In file included from src/image.cpp:20: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/matrix2d.lo src/matrix2d.cpp In file included from src/ctffind_runner.cpp:20: In file included from ./src/ctffind_runner.h:30: ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/ctffind_runner.cpp:206:15: note: in instantiation of member function 'Image::read' requested here I.read(fn_mic); ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -fPIC -DPIC -o src/.libs/matrix1d.o 3 warnings and 1 error generated. Makefile:1243: recipe for target 'src/image.lo' failed make[3]: *** [src/image.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... src/healpix_sampling.cpp:1508:42: warning: '&&' within '||' [-Wlogical-op-parentheses] if (rot_angles[i] >= 90. && ~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/healpix_sampling.cpp:1508:42: note: place parentheses around the '&&' expression to silence this warning if (rot_angles[i] >= 90. && ^ ( 3 warnings and 1 error generated. Makefile:1243: recipe for target 'src/backprojector.lo' failed make[3]: *** [src/backprojector.lo] Error 1 ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/autopicker.cpp:121:9: note: in instantiation of member function 'Image::read' requested here Iref.read(fn_img); ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 5 warnings and 1 error generated. Makefile:1243: recipe for target 'src/ctffind_runner.lo' failed make[3]: *** [src/ctffind_runner.lo] Error 1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -fPIC -DPIC -o src/.libs/matrix2d.o ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/exp_model.cpp:673:7: note: in instantiation of member function 'Image::read' requested here img.read(fn_exp, false); // false means skip data, only read header ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 4 warnings and 1 error generated. 4 warnings and 1 error generated. Makefile:1243: recipe for target 'src/exp_model.lo' failed make[3]: *** [src/exp_model.lo] Error 1 Makefile:1243: recipe for target 'src/autopicker.lo' failed make[3]: *** [src/autopicker.lo] Error 1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/funcs.cpp -o src/funcs.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix2d.cpp -o src/matrix2d.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/mask.cpp -o src/mask.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/filename.cpp -o src/filename.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/matrix1d.cpp -o src/matrix1d.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/fftw.cpp -o src/fftw.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 3 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/healpix_sampling.cpp -o src/healpix_sampling.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/relion-1.4+dfsg' Makefile:697: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/autopicker.cpp:121:9: note: in instantiation of member function 'Image::read' requested here Iref.read(fn_img); ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 4 warnings and 1 error generated. Makefile:1243: recipe for target 'src/autopicker.lo' failed make[2]: *** [src/autopicker.lo] Error 1 make[2]: Leaving directory '/<>/relion-1.4+dfsg' debian/rules:42: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/relion-1.4+dfsg' debian/rules:37: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-20T18:11:06Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 18508 Build-Time: 22 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 9 Job: relion_1.4+dfsg-2 Machine Architecture: amd64 Package: relion Package-Time: 53 Source-Version: 1.4+dfsg-2 Space: 18508 Status: attempted Version: 1.4+dfsg-2 -------------------------------------------------------------------------------- Finished at 2017-08-20T18:11:06Z Build needed 00:00:53, 18508k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 54.347677265s DC-Time-Estimation: 54.347677265 versus expected 454 (r/m: 7.353622874926005 ; m: 54.347677265)