DC-Build-Header: anfo 0.98-6 / 2018-05-02 12:59:00 +0000
DC-Task: type:rebuild-binarch-only source:anfo version:0.98-6 chroot:unstable esttime:164 logfile:/tmp/anfo_0.98-6_unstable_clang60.log modes:clang60:binarch-only
DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v  --chroot-setup-commands=/tmp/clang60 anfo_0.98-6'
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-14-5.eu-central-1.compute.internal

+==============================================================================+
| anfo 0.98-6 (amd64)                          Wed, 02 May 2018 12:59:00 +0000 |
+==============================================================================+

Package: anfo
Version: 0.98-6
Source Version: 0.98-6
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-ad55f80c-38e2-4a43-bb73-590a0d4063c6' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


/tmp/clang60
------------

+ echo 'Entering customization script...'
Entering customization script...
+ CLANG_VERSION=6.0
+ echo 'Install of clang-6.0'
Install of clang-6.0
+ apt-get update
Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB]
Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB]
Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB]
Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B]
Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B]
Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB]
Fetched 6332 kB in 2s (3500 kB/s)
Reading package lists...
+ apt-get install --yes --no-install-recommends --force-yes clang-6.0
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev
  libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev
  libobjc4
Suggested packages:
  gnustep gnustep-devel clang-6.0-doc
Recommended packages:
  llvm-6.0-dev python libomp-dev libgpm2
The following NEW packages will be installed:
  clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev
  libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev
  libobjc4
0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded.
Need to get 37.7 MB of archives.
After this operation, 187 MB of additional disk space will be used.
Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB]
Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB]
Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB]
Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB]
Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB]
Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB]
Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB]
Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB]
Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB]
Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB]
Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB]
Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB]
Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 37.7 MB in 0s (98.5 MB/s)
Selecting previously unselected package libjsoncpp1:amd64.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 25%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 10022 files and directories currently installed.)
Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ...
Unpacking libjsoncpp1:amd64 (1.7.4-3) ...
Selecting previously unselected package libbsd0:amd64.
Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ...
Unpacking libbsd0:amd64 (0.8.7-1) ...
Selecting previously unselected package libncurses5:amd64.
Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ...
Unpacking libncurses5:amd64 (6.1+20180210-2) ...
Selecting previously unselected package libedit2:amd64.
Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ...
Unpacking libedit2:amd64 (3.1-20170329-1) ...
Selecting previously unselected package libllvm6.0:amd64.
Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ...
Unpacking libllvm6.0:amd64 (1:6.0-3) ...
Selecting previously unselected package libobjc4:amd64.
Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ...
Unpacking libobjc4:amd64 (8-20180425-1) ...
Selecting previously unselected package libobjc-7-dev:amd64.
Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ...
Unpacking libobjc-7-dev:amd64 (7.3.0-17) ...
Selecting previously unselected package libc6-i386.
Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ...
Unpacking libc6-i386 (2.27-3) ...
Selecting previously unselected package lib32gcc1.
Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ...
Unpacking lib32gcc1 (1:8-20180425-1) ...
Selecting previously unselected package lib32stdc++6.
Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ...
Unpacking lib32stdc++6 (8-20180425-1) ...
Selecting previously unselected package libclang-common-6.0-dev.
Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ...
Unpacking libclang-common-6.0-dev (1:6.0-3) ...
Selecting previously unselected package libclang1-6.0:amd64.
Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ...
Unpacking libclang1-6.0:amd64 (1:6.0-3) ...
Selecting previously unselected package clang-6.0.
Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ...
Unpacking clang-6.0 (1:6.0-3) ...
Setting up libncurses5:amd64 (6.1+20180210-2) ...
Setting up libobjc4:amd64 (8-20180425-1) ...
Setting up libc6-i386 (2.27-3) ...
Setting up libbsd0:amd64 (0.8.7-1) ...
Setting up libobjc-7-dev:amd64 (7.3.0-17) ...
Processing triggers for libc-bin (2.27-3) ...
Setting up lib32gcc1 (1:8-20180425-1) ...
Setting up libjsoncpp1:amd64 (1.7.4-3) ...
Setting up libedit2:amd64 (3.1-20170329-1) ...
Setting up libllvm6.0:amd64 (1:6.0-3) ...
Setting up libclang1-6.0:amd64 (1:6.0-3) ...
Setting up lib32stdc++6 (8-20180425-1) ...
Setting up libclang-common-6.0-dev (1:6.0-3) ...
Setting up clang-6.0 (1:6.0-3) ...
Processing triggers for libc-bin (2.27-3) ...
W: --force-yes is deprecated, use one of the options starting with --allow instead.
+ echo 'Replace gcc, g++ & cpp by clang'
Replace gcc, g++ & cpp by clang
+ VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8'
+ cd /usr/bin
+ for VERSION in $VERSIONS
+ rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc
+ ln -s clang++-6.0 g++-4.6
+ ln -s clang-6.0 gcc-4.6
+ ln -s clang-6.0 cpp-4.6
+ ln -s clang-6.0 gcc
+ echo 'gcc-4.6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc
+ ln -s clang++-6.0 g++-4.7
+ ln -s clang-6.0 gcc-4.7
+ ln -s clang-6.0 cpp-4.7
+ ln -s clang-6.0 gcc
+ echo 'gcc-4.7 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.7
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.7 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.7
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc
+ ln -s clang++-6.0 g++-4.8
+ ln -s clang-6.0 gcc-4.8
+ ln -s clang-6.0 cpp-4.8
+ ln -s clang-6.0 gcc
+ echo 'gcc-4.8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc
+ ln -s clang++-6.0 g++-4.9
+ ln -s clang-6.0 gcc-4.9
+ ln -s clang-6.0 cpp-4.9
+ ln -s clang-6.0 gcc
+ echo 'gcc-4.9 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.9
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.9 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.9
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-5 gcc-5 cpp-5 gcc
+ ln -s clang++-6.0 g++-5
+ ln -s clang-6.0 gcc-5
+ ln -s clang-6.0 cpp-5
+ ln -s clang-6.0 gcc
+ echo 'gcc-5 hold'
+ dpkg --set-selections
+ echo 'g++-5 hold'
+ dpkg --set-selections
+ for VERSION in $VERSIONS
+ rm -f g++-6 gcc-6 cpp-6 gcc
+ ln -s clang++-6.0 g++-6
+ ln -s clang-6.0 gcc-6
+ ln -s clang-6.0 cpp-6
+ ln -s clang-6.0 gcc
+ echo 'gcc-6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-7 gcc-7 cpp-7 gcc
+ ln -s clang++-6.0 g++-7
+ ln -s clang-6.0 gcc-7
+ ln -s clang-6.0 cpp-7
+ ln -s clang-6.0 gcc
+ echo 'gcc-7 hold'
+ dpkg --set-selections
+ echo 'g++-7 hold'
+ dpkg --set-selections
+ for VERSION in $VERSIONS
+ rm -f g++-8 gcc-8 cpp-8 gcc
+ ln -s clang++-6.0 g++-8
+ ln -s clang-6.0 gcc-8
+ ln -s clang-6.0 cpp-8
+ ln -s clang-6.0 gcc
+ echo 'gcc-8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ cd -
/build/anfo-zo47jS
+ echo 'Check if gcc, g++ & cpp are actually clang'
Check if gcc, g++ & cpp are actually clang
+ gcc --version
+ grep clang
+ cpp --version
+ grep clang
+ g++ --version
+ grep clang

I: Finished running '/tmp/clang60'.

Finished processing commands.
--------------------------------------------------------------------------------

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Hit:1 http://127.0.0.1:9999/debian unstable InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'anfo' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/anfo.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/anfo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 472 kB of source archives.
Get:1 http://127.0.0.1:9999/debian unstable/main anfo 0.98-6 (dsc) [2159 B]
Get:2 http://127.0.0.1:9999/debian unstable/main anfo 0.98-6 (tar) [462 kB]
Get:3 http://127.0.0.1:9999/debian unstable/main anfo 0.98-6 (diff) [7468 B]
Fetched 472 kB in 0s (2724 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/anfo-zo47jS/anfo-0.98' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/anfo-zo47jS' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-P1WDMA/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Release [957 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Packages [431 B]
Fetched 1737 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 10771 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77)
Filtered Build-Depends: debhelper (>= 10), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77)
dpkg-deb: building package 'sbuild-build-depends-anfo-dummy' in '/<<BUILDDIR>>/resolver-P1WDMA/apt_archive/sbuild-build-depends-anfo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-anfo-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Ign:1 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Release [963 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Sources [546 B]
Get:5 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ Packages [629 B]
Fetched 2138 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install anfo build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libbz2-dev libcroco3 libelf-dev libelf1
  libelk0 libelk0-dev libfile-stripnondeterminism-perl libglib2.0-0 libice-dev
  libice6 libicu57 libmagic-mgc libmagic1 libpipeline1 libpopt-dev libpopt0
  libprotobuf-dev libprotobuf-lite10 libprotobuf10 libprotoc10
  libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool
  libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxmu-dev
  libxmu-headers libxmu6 libxt-dev libxt6 lsb-base m4 man-db pkg-config
  po-debconf protobuf-compiler x11-common x11proto-core-dev x11proto-dev
  x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff
  libice-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
  libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libltdl-dev libx11-doc libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
  dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libbz2-dev libcroco3 libelf-dev libelf1
  libelk0 libelk0-dev libfile-stripnondeterminism-perl libglib2.0-0 libice-dev
  libice6 libicu57 libmagic-mgc libmagic1 libpipeline1 libpopt-dev libpopt0
  libprotobuf-dev libprotobuf-lite10 libprotobuf10 libprotoc10
  libpthread-stubs0-dev libsigsegv2 libsm-dev libsm6 libtimedate-perl libtool
  libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxmu-dev
  libxmu-headers libxmu6 libxt-dev libxt6 lsb-base m4 man-db pkg-config
  po-debconf protobuf-compiler sbuild-build-depends-anfo-dummy x11-common
  x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools
  xtrans-dev zlib1g-dev
0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.3 MB of archives.
After this operation, 97.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-P1WDMA/apt_archive ./ sbuild-build-depends-anfo-dummy 0.invalid.0 [924 B]
Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB]
Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB]
Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB]
Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB]
Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB]
Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB]
Get:8 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB]
Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB]
Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:11 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB]
Get:12 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB]
Get:13 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:14 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB]
Get:15 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB]
Get:16 http://127.0.0.1:9999/debian unstable/main amd64 d-shlibs all 0.82 [18.8 kB]
Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB]
Get:18 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB]
Get:19 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB]
Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:22 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB]
Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB]
Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB]
Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB]
Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB]
Get:27 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB]
Get:28 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB]
Get:30 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB]
Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.4 kB]
Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libelf1 amd64 0.170-0.4 [162 kB]
Get:33 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB]
Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libelf-dev amd64 0.170-0.4 [71.6 kB]
Get:35 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20170808 [28.1 kB]
Get:36 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB]
Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB]
Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB]
Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB]
Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.13-1 [136 kB]
Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.5-1 [292 kB]
Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.5-1 [749 kB]
Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB]
Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB]
Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB]
Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libelk0 amd64 3.99.8-4.1+b2 [166 kB]
Get:48 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:49 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB]
Get:50 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B]
Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB]
Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB]
Get:53 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB]
Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B]
Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.13-1 [173 kB]
Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.5-1 [817 kB]
Get:57 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B]
Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB]
Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB]
Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libsm-dev amd64 2:1.2.2-1+b3 [35.8 kB]
Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libxt-dev amd64 1:1.1.5-1 [423 kB]
Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libxmu-dev amd64 2:1.1.2-2 [65.0 kB]
Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libelk0-dev amd64 3.99.8-4.1+b2 [193 kB]
Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libpopt0 amd64 1.16-11 [49.2 kB]
Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libpopt-dev amd64 1.16-11 [50.8 kB]
Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libprotobuf10 amd64 3.0.0-9.1 [687 kB]
Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libprotobuf-lite10 amd64 3.0.0-9.1 [126 kB]
Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libprotobuf-dev amd64 3.0.0-9.1 [958 kB]
Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libprotoc10 amd64 3.0.0-9.1 [600 kB]
Get:71 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB]
Get:72 http://127.0.0.1:9999/debian unstable/main amd64 protobuf-compiler amd64 3.0.0-9.1 [53.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libsigsegv2:amd64 (2.12-2) ...
Setting up libpthread-stubs0-dev:amd64 (0.3-4) ...
Setting up libelf1:amd64 (0.170-0.4) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:amd64 (2.56.1-2) ...
No schema files found: doing nothing.
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up d-shlibs (0.82) ...
Setting up gettext-base (0.19.8.1-6) ...
Setting up libpipeline1:amd64 (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:amd64 (57.1-9) ...
Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ...
Setting up x11proto-dev (2018.4-4) ...
Setting up libmagic-mgc (1:5.33-2) ...
Setting up libmagic1:amd64 (1:5.33-2) ...
Setting up lsb-base (9.20170808) ...
Setting up libcroco3:amd64 (0.6.12-2) ...
Setting up libprotobuf10:amd64 (3.0.0-9.1) ...
Setting up pkg-config (0.29-4+b1) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up x11proto-xext-dev (2018.4-4) ...
Processing triggers for libc-bin (2.27-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libprotobuf-lite10:amd64 (3.0.0-9.1) ...
Setting up libprotoc10:amd64 (3.0.0-9.1) ...
Setting up libx11-data (2:1.6.5-1) ...
Setting up libxau6:amd64 (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.041-1) ...
Setting up x11proto-core-dev (2018.4-4) ...
Setting up protobuf-compiler (3.0.0-9.1) ...
Setting up gettext (0.19.8.1-6) ...
Setting up libprotobuf-dev:amd64 (3.0.0-9.1) ...
Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.33-2) ...
Setting up libelf-dev:amd64 (0.170-0.4) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:amd64 (2:1.0.9-2) ...
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxcb1:amd64 (1.13-1) ...
Setting up libtool (2.4.6-2.1) ...
Setting up libsm6:amd64 (2:1.2.2-1+b3) ...
Setting up po-debconf (1.0.20) ...
Setting up libx11-6:amd64 (2:1.6.5-1) ...
Setting up libice-dev:amd64 (2:1.0.9-2) ...
Setting up libxt6:amd64 (1:1.1.5-1) ...
Setting up libxcb1-dev:amd64 (1.13-1) ...
Setting up libx11-dev:amd64 (2:1.6.5-1) ...
Setting up libsm-dev:amd64 (2:1.2.2-1+b3) ...
Setting up libxext6:amd64 (2:1.3.3-1+b2) ...
Setting up libxmu-headers (2:1.1.2-2) ...
Setting up libxmu6:amd64 (2:1.1.2-2) ...
Setting up libelk0 (3.99.8-4.1+b2) ...
Setting up libxext-dev:amd64 (2:1.3.3-1+b2) ...
Setting up libxt-dev:amd64 (1:1.1.5-1) ...
Setting up libxmu-dev:amd64 (2:1.1.2-2) ...
Setting up libelk0-dev (3.99.8-4.1+b2) ...
Setting up dh-strip-nondeterminism (0.041-1) ...
Setting up debhelper (11.2.1) ...
Setting up dh-autoreconf (17) ...
Setting up sbuild-build-depends-anfo-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hostname_3.20 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-16 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libdb5.3_5.3.28-13.1+b1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libelf-dev_0.170-0.4 libelf1_0.170-0.4 libelk0_3.99.8-4.1+b2 libelk0-dev_3.99.8-4.1+b2 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libhogweed4_3.4-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjsoncpp1_1.7.4-3 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libnettle6_3.4-1 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpopt-dev_1.16-11 libpopt0_1.16-11 libprotobuf-dev_3.0.0-9.1 libprotobuf-lite10_3.0.0-9.1 libprotobuf10_3.0.0-9.1 libprotoc10_3.0.0-9.1 libpthread-stubs0-dev_0.3-4 libquadmath0_8-20180425-1 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.2-1+b3 libsm6_2:1.2.2-1+b3 libsmartcols1_2.31.1-0.5 libss2_1.44.1-2 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.4+dfsg1-6.1 libxmu-dev_2:1.1.2-2 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 lsb-base_9.20170808 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pkg-config_0.29-4+b1 po-debconf_1.0.20 protobuf-compiler_3.0.0-9.1 sbuild-build-depends-anfo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 util-linux_2.31.1-0.5 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Oct  9 14:21:11 2017 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./anfo_0.98-6.dsc
dpkg-source: info: extracting anfo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking anfo_0.98.orig.tar.gz
dpkg-source: info: unpacking anfo_0.98-6.debian.tar.xz
dpkg-source: info: applying 01-silence-narrowing-conversion.patch
dpkg-source: info: applying 02-correct-minscore-self-initialization.patch
dpkg-source: info: applying 03-include-unistd-forF_OK.patch
dpkg-source: info: applying 04-reorder-template-for-new-scope-rules.patch
dpkg-source: info: applying 05-autoreconf.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=POSIX
LOGNAME=user42
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1001
SCHROOT_GROUP=user42
SCHROOT_SESSION_ID=unstable-amd64-sbuild-ad55f80c-38e2-4a43-bb73-590a0d4063c6
SCHROOT_UID=1001
SCHROOT_USER=user42
SHELL=/bin/sh
USER=user42

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package anfo
dpkg-buildpackage: info: source version 0.98-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build anfo-0.98
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh  clean
   dh_clean
 debian/rules build-arch
dh  build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.15/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.15/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
aclocal: overwriting 'm4/libtool.m4' with '/usr/share/aclocal/libtool.m4'
aclocal: overwriting 'm4/ltoptions.m4' with '/usr/share/aclocal/ltoptions.m4'
aclocal: overwriting 'm4/ltversion.m4' with '/usr/share/aclocal/ltversion.m4'
aclocal: overwriting 'm4/lt~obsolete.m4' with '/usr/share/aclocal/lt~obsolete.m4'
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.15/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.15/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.15/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: installing './ar-lib'
configure.ac:12: installing './compile'
configure.ac:6: installing './missing'
src/Makefile.am: installing './depcomp'
   dh_auto_configure -a
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for protoc... /usr/bin/protoc
checking for library containing exp... none required
checking for library containing log1p... none required
checking for poptGetContext in -lpopt... yes
checking for deflate in -lz... yes
checking for BZ2_bzCompress in -lbz2... yes
checking for Elk_Init in -lelk... yes
checking popt.h usability... yes
checking popt.h presence... yes
checking for popt.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for protobuf... yes
checking google/protobuf/message.h usability... yes
checking google/protobuf/message.h presence... yes
checking for google/protobuf/message.h... yes
checking elk/scheme.h usability... yes
checking elk/scheme.h presence... yes
checking for elk/scheme.h... yes
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for working volatile... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for int32_t... yes
checking for int64_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for uint8_t... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for strerror... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating man/Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking the archiver (ar) interface... ar
   dh_auto_build -a
	make -j8 -Oline
make  all-recursive
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
protoc -I. -I/usr/include --cpp_out=. config.proto
[libprotobuf WARNING google/protobuf/compiler/parser.cc:547] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
protoc -I. -I/usr/include --cpp_out=. output.proto
[libprotobuf WARNING google/protobuf/compiler/parser.cc:547] No syntax specified for the proto file: output.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
[libprotobuf WARNING google/protobuf/compiler/parser.cc:547] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc  -fPIC -DPIC -o .libs/align.o
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
22 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -o align.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o concurrent_stream.lo concurrent_stream.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc  -fPIC -DPIC -o .libs/concurrent_stream.o
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
concurrent_stream.cc:107:9: warning: exception of type 'char *' will be caught by earlier handler [-Wexceptions]
        catch( char *e ) { perr( e ) ; }
               ^
concurrent_stream.cc:106:15: note: for type 'const char *'
        catch( const char *e ) { perr( e ) ; }
                     ^
concurrent_stream.cc:178:2: warning: 'auto_ptr<output::Result>' is deprecated [-Wdeprecated-declarations]
        auto_ptr< Result > r( outgoing_[ next_out_++ ] ) ;
        ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<output::Result>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
concurrent_stream.cc:212:2: warning: 'auto_ptr<output::Result>' is deprecated [-Wdeprecated-declarations]
        auto_ptr< Result > r( incoming_[ next_in_ ] ) ;
        ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<output::Result>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
21 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -o concurrent_stream.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc  -fPIC -DPIC -o .libs/sequence.o
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
22 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -o sequence.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stream.lo stream.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc  -fPIC -DPIC -o .libs/stream.o
In file included from stream.cc:21:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:81:30: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
AnfoReader::AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name )
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:373:20: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
        comp_size &= ~(~0 << 28) ;
                       ~~ ^
stream.cc:421:36: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
ChunkedReader::ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1093:9: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1114:29: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        StreamWithProgress( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, int64_t total )
                                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1149:40: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
        StreamHolder make_input_stream_( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, bool solexa_scores, char origin, const string& genome )
                                              ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1179:9: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > bs( new BunzipStream( is ) ) ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1189:9: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > zs( new InflateStream( is ) ) ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1233:9: warning: 'auto_ptr<google::protobuf::io::FileInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::FileInputStream > s( new google::protobuf::io::FileInputStream( fd ) ) ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1238:12: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                                                std::auto_ptr<google::protobuf::io::ZeroCopyInputStream>(s), name_, st.st_size ) ) ;
                                                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1378:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
BamReader::BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) : 
                      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
In file included from ./compress_stream.h:20:
In file included from ./util.h:26:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/sstream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/istream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/ios:42:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/ios_base.h:41:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/locale_classes.h:40:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/string:48:
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/stl_function.h:386:20: error: call to function 'operator<' that is neither visible in the template definition nor found by argument-dependent lookup
      { return __x < __y; }
                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/stl_tree.h:2525:11: note: in instantiation of member function 'std::less<config::Policy>::operator()' requested here
              || _M_impl._M_key_compare(__k,
                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/stl_set.h:766:21: note: in instantiation of member function 'std::_Rb_tree<config::Policy, config::Policy, std::_Identity<config::Policy>, std::less<config::Policy>, std::allocator<config::Policy> >::find' requested here
      { return _M_t.find(__x); }
                    ^
stream.cc:479:9: note: in instantiation of member function 'std::set<config::Policy, std::less<config::Policy>, std::allocator<config::Policy> >::find' requested here
                if( s.find( r.Get(b) ) == s.end() )
                      ^
stream.cc:531:2: note: in instantiation of function template specialization 'streams::nub<config::Policy>' requested here
        nub( *hdr.mutable_config()->mutable_policy() ) ;
        ^
stream.cc:48:7: note: 'operator<' should be declared prior to the call site or in an associated namespace of one of its arguments
        bool operator < ( const config::Policy& p, const config::Policy& q )
             ^
In file included from stream.cc:21:
In file included from ./compress_stream.h:20:
In file included from ./util.h:26:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/sstream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/istream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/ios:42:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/ios_base.h:41:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/locale_classes.h:40:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/string:48:
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/stl_function.h:386:20: error: call to function 'operator<' that is neither visible in the template definition nor found by argument-dependent lookup
      { return __x < __y; }
                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/stl_tree.h:2525:11: note: in instantiation of member function 'std::less<output::Read>::operator()' requested here
              || _M_impl._M_key_compare(__k,
                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/bits/stl_set.h:766:21: note: in instantiation of member function 'std::_Rb_tree<output::Read, output::Read, std::_Identity<output::Read>, std::less<output::Read>, std::allocator<output::Read> >::find' requested here
      { return _M_t.find(__x); }
                    ^
stream.cc:479:9: note: in instantiation of member function 'std::set<output::Read, std::less<output::Read>, std::allocator<output::Read> >::find' requested here
                if( s.find( r.Get(b) ) == s.end() )
                      ^
stream.cc:612:2: note: in instantiation of function template specialization 'streams::nub<output::Read>' requested here
        nub( *lhs.mutable_members() ) ;
        ^
stream.cc:45:7: note: 'operator<' should be declared prior to the call site or in an associated namespace of one of its arguments
        bool operator < ( const output::Read& p, const output::Read& q )
             ^
33 warnings and 2 errors generated.
make[4]: *** [Makefile:758: stream.lo] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: *** Waiting for unfinished jobs....
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc  -fPIC -DPIC -o .libs/util.o
util.cc:40:9: warning: exception of type 'char *' will be caught by earlier handler [-Wexceptions]
        catch( char *e ) { perr( e ) ; }
               ^
util.cc:39:15: note: for type 'const char *'
        catch( const char *e ) { perr( e ) ; }
                     ^
1 warning generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -o util.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output_streams.lo output_streams.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc  -fPIC -DPIC -o .libs/output_streams.o
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:45:3: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                auto_ptr< std::ostream > out_ ;
                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:72:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:123:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:138:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:149:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:176:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
28 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -o output_streams.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ducttape.lo ducttape.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc  -fPIC -DPIC -o .libs/ducttape.o
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
./ducttape.h:139:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
ducttape.cc:597:57: warning: implicit conversion from 'int' to 'char' changes value from 254 to -2 [-Wconstant-conversion]
                                        buf[1] = h->has_map_quality() ? h->map_quality() : 254 ;
                                               ~                                           ^~~
24 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -o ducttape.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index.lo index.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc  -fPIC -DPIC -o .libs/index.o
index.cc:424:11: warning: exception of type 'char *' will be caught by earlier handler [-Wexceptions]
                        catch( char *e ) { perr( e ) ; }
                               ^
index.cc:423:17: note: for type 'const char *'
                        catch( const char *e ) { perr( e ) ; }
                                     ^
1 warning generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -o index.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o misc_streams.lo misc_streams.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc  -fPIC -DPIC -o .libs/misc_streams.o
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
misc_streams.cc:332:42: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
{ return Cons( Make_Unsigned( x & ~(~0LL << 31) ), Cons( Make_Unsigned( x >> 31 ), l ) ) ; }
                                    ~~~~ ^
misc_streams.cc:489:2: warning: 'auto_ptr<std::basic_istream<char> >' is deprecated [-Wdeprecated-declarations]
        auto_ptr< istream > deffile( p.first ) ;
        ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_istream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
24 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -o misc_streams.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo_common.lo anfo_common.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc  -fPIC -DPIC -o .libs/anfo_common.o
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
22 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -o anfo_common.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo-elk.lo anfo-elk.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc  -fPIC -DPIC -o .libs/anfo-elk.o
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:27:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:28:
./ducttape.h:139:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:31:
./output_streams.h:45:3: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                auto_ptr< std::ostream > out_ ;
                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:31:
./output_streams.h:72:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:31:
./output_streams.h:123:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:31:
./output_streams.h:138:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:31:
./output_streams.h:149:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo-elk.cc:31:
./output_streams.h:176:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/c++/7.3.0/backward/auto_ptr.h:285:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0/../../../../include/x86_64-linux-gnu/c++/7.3.0/bits/c++config.h:85:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
29 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo-elk.cc -o anfo-elk.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: *** [Makefile:427: all] Error 2
make[2]: *** [Makefile:462: all-recursive] Error 1
make[1]: *** [Makefile:370: all] Error 2
dh_auto_build: make -j8 -Oline returned exit code 2
make: *** [debian/rules:12: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2018-05-02T12:59:55Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: any
Build-Space: 27184
Build-Time: 34
Distribution: unstable
Fail-Stage: build
Host Architecture: amd64
Install-Time: 8
Job: anfo_0.98-6
Machine Architecture: amd64
Package: anfo
Package-Time: 55
Source-Version: 0.98-6
Space: 27184
Status: attempted
Version: 0.98-6
--------------------------------------------------------------------------------
Finished at 2018-05-02T12:59:55Z
Build needed 00:00:55, 27184k disk space
E: Build failure (dpkg-buildpackage died)
DC-Status: Failed 55.964701278s
DC-Time-Estimation: 55.964701278 versus expected 164 (r/m: 1.930418571973495 ; m: 55.964701278)