DC-Build-Header: canu 1.7+dfsg-1 / 2018-05-02 13:14:14 +0000 DC-Task: type:rebuild-binarch-only source:canu version:1.7+dfsg-1 chroot:unstable esttime:87 logfile:/tmp/canu_1.7+dfsg-1_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 canu_1.7+dfsg-1' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-7-134.eu-central-1.compute.internal +==============================================================================+ | canu 1.7+dfsg-1 (amd64) Wed, 02 May 2018 13:14:15 +0000 | +==============================================================================+ Package: canu Version: 1.7+dfsg-1 Source Version: 1.7+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-35ce83b4-b9ad-4b44-adf9-d7f469e719e6' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (3418 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (97.9 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/canu-qnJUjU + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'canu' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/canu.git Please use: git clone https://anonscm.debian.org/git/debian-med/canu.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1179 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main canu 1.7+dfsg-1 (dsc) [2000 B] Get:2 http://127.0.0.1:9999/debian unstable/main canu 1.7+dfsg-1 (tar) [1171 kB] Get:3 http://127.0.0.1:9999/debian unstable/main canu 1.7+dfsg-1 (diff) [6144 B] Fetched 1179 kB in 0s (7012 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/canu-qnJUjU/canu-1.7+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/canu-qnJUjU' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-KsfsNU/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-KsfsNU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KsfsNU/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-KsfsNU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KsfsNU/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-KsfsNU/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-KsfsNU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), libboost-dev, libmeryl-dev, libfilesys-df-perl, mhap (>= 2.1.3) Filtered Build-Depends: debhelper (>= 10), libboost-dev, libmeryl-dev, libfilesys-df-perl, mhap (>= 2.1.3) dpkg-deb: building package 'sbuild-build-depends-canu-dummy' in '/<>/resolver-KsfsNU/apt_archive/sbuild-build-depends-canu-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-canu-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-KsfsNU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KsfsNU/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-KsfsNU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KsfsNU/apt_archive ./ Sources [518 B] Get:5 copy:/<>/resolver-KsfsNU/apt_archive ./ Packages [602 B] Fetched 2083 B in 0s (0 B/s) Reading package lists... Reading package lists... Install canu build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binfmt-support bsdmainutils ca-certificates ca-certificates-java debhelper default-jre-headless dh-autoreconf dh-strip-nondeterminism fastjar file gettext gettext-base groff-base intltool-debian jaligner jarwrapper java-common libapache-pom-java libarchive-zip-perl libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libboost-dev libboost1.62-dev libcommons-compress-java libcommons-parent-java libcroco3 libcups2 libdbus-1-3 libfastutil-java libfile-stripnondeterminism-perl libfilesys-df-perl libfreetype6 libglib2.0-0 libgssapi-krb5-2 libguava-java libicu57 libjpeg62-turbo libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libmagic-mgc libmagic1 libmeryl-dev libnspr4 libnss3 libpcsclite1 libpipeline1 libpng16-16 libsigsegv2 libsqlite3-0 libssl1.1 libssw-java libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxtst6 lsb-base m4 man-db mhap openjdk-10-jre-headless openssl po-debconf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz default-jre gettext-doc libasprintf-dev libgettextpo-dev groff libatinject-jsr330-api-java-doc libboost-doc libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libxz-java cups-common krb5-doc krb5-user libjsr305-java-doc liblcms2-utils pcscd libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binfmt-support bsdmainutils ca-certificates ca-certificates-java debhelper default-jre-headless dh-autoreconf dh-strip-nondeterminism fastjar file gettext gettext-base groff-base intltool-debian jaligner jarwrapper java-common libapache-pom-java libarchive-zip-perl libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libboost-dev libboost1.62-dev libcommons-compress-java libcommons-parent-java libcroco3 libcups2 libdbus-1-3 libfastutil-java libfile-stripnondeterminism-perl libfilesys-df-perl libfreetype6 libglib2.0-0 libgssapi-krb5-2 libguava-java libicu57 libjpeg62-turbo libjsr305-java libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblcms2-2 libmagic-mgc libmagic1 libmeryl-dev libnspr4 libnss3 libpcsclite1 libpipeline1 libpng16-16 libsigsegv2 libsqlite3-0 libssl1.1 libssw-java libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxtst6 lsb-base m4 man-db mhap openjdk-10-jre-headless openssl po-debconf sbuild-build-depends-canu-dummy x11-common 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 92.1 MB of archives. After this operation, 410 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KsfsNU/apt_archive ./ sbuild-build-depends-canu-dummy 0.invalid.0 [896 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20170808 [28.1 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 binfmt-support amd64 2.1.8-2 [61.2 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0h-2 [1352 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 openssl amd64 1.1.0h-2 [744 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 ca-certificates all 20180409 [161 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 java-common all 0.65 [14.2 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common-data amd64 0.7-4 [122 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common3 amd64 0.7-4 [54.4 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libdbus-1-3 amd64 1.12.8-1 [209 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-client3 amd64 0.7-4 [57.8 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libcups2 amd64 2.2.7-3 [320 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 liblcms2-2 amd64 2.9-1 [145 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libnspr4 amd64 2:4.19-1 [117 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.23.1-1 [603 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libnss3 amd64 2:3.36.1-1 [1153 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.34-1 [287 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8.1-2 [461 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libpcsclite1 amd64 1.8.23-2 [58.0 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.13-1 [136 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.5-1 [292 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.5-1 [749 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 openjdk-10-jre-headless amd64 10.0.1+10-3 [39.5 MB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 default-jre-headless amd64 2:1.10-65 [10.6 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 ca-certificates-java all 20180413 [15.1 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 fastjar amd64 2:0.98-6+b1 [81.0 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 jaligner all 1.0+dfsg-4 [128 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 jarwrapper all 0.63 [18.4 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libapache-pom-java all 18-1 [4676 B] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-5+b1 [7004 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libcommons-compress-java all 1.13-2 [430 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libfastutil-java all 7.1.0-2 [14.4 MB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libfilesys-df-perl amd64 0.92-6+b3 [12.5 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libjsr305-java all 0.1~+svn49-10 [26.5 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libguava-java all 19.0-1 [2028 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libmeryl-dev amd64 0~20150903+r2013-3 [51.7 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libssw-java amd64 1.1-1+b1 [13.8 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 mhap all 2.1.3+dfsg-1 [160 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.1 MB in 1s (75.1 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2_amd64.deb ... Unpacking bsdmainutils (11.1.2) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.33-2_amd64.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.33-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.33-2) ... Selecting previously unselected package file. 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Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../72-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../73-libcommons-compress-java_1.13-2_all.deb ... Unpacking libcommons-compress-java (1.13-2) ... Selecting previously unselected package libfastutil-java. Preparing to unpack .../74-libfastutil-java_7.1.0-2_all.deb ... Unpacking libfastutil-java (7.1.0-2) ... Selecting previously unselected package libfilesys-df-perl. Preparing to unpack .../75-libfilesys-df-perl_0.92-6+b3_amd64.deb ... Unpacking libfilesys-df-perl (0.92-6+b3) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../76-libjsr305-java_0.1~+svn49-10_all.deb ... Unpacking libjsr305-java (0.1~+svn49-10) ... Selecting previously unselected package libguava-java. Preparing to unpack .../77-libguava-java_19.0-1_all.deb ... Unpacking libguava-java (19.0-1) ... Selecting previously unselected package libmeryl-dev. Preparing to unpack .../78-libmeryl-dev_0~20150903+r2013-3_amd64.deb ... Unpacking libmeryl-dev (0~20150903+r2013-3) ... Selecting previously unselected package libssw-java. Preparing to unpack .../79-libssw-java_1.1-1+b1_amd64.deb ... Unpacking libssw-java (1.1-1+b1) ... Selecting previously unselected package mhap. Preparing to unpack .../80-mhap_2.1.3+dfsg-1_all.deb ... Unpacking mhap (2.1.3+dfsg-1) ... Selecting previously unselected package sbuild-build-depends-canu-dummy. Preparing to unpack .../81-sbuild-build-depends-canu-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-canu-dummy (0.invalid.0) ... Setting up libssw-java (1.1-1+b1) ... Setting up libfastutil-java (7.1.0-2) ... Setting up libmeryl-dev (0~20150903+r2013-3) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libboost1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up fastjar (2:0.98-6+b1) ... Setting up libpng16-16:amd64 (1.6.34-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:amd64 (2.9-1) ... Setting up libpcsclite1:amd64 (1.8.23-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libfilesys-df-perl (0.92-6+b3) ... Setting up java-common (0.65) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-9) ... Setting up libnspr4:amd64 (2:4.19-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up libfreetype6:amd64 (2.8.1-2) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up lsb-base (9.20170808) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libjsr305-java (0.1~+svn49-10) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up libssl1.1:amd64 (1.1.0h-2) ... Setting up libapache-pom-java (18-1) ... Setting up openssl (1.1.0h-2) ... Setting up libsqlite3-0:amd64 (3.23.1-1) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libboost-dev:amd64 (1.62.0.1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 133 added, 0 removed; done. Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-6) ... Setting up libdbus-1-3:amd64 (1.12.8-1) ... Setting up libavahi-common-data:amd64 (0.7-4) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up binfmt-support (2.1.8-2) ... update-binfmts: warning: Couldn't load the binfmt_misc module. invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up gettext (0.19.8.1-6) ... Setting up libguava-java (19.0-1) ... Setting up libnss3:amd64 (2:3.36.1-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up libcommons-parent-java (43-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libcommons-compress-java (1.13-2) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:amd64 (0.7-4) ... Setting up jarwrapper (0.63) ... update-binfmts: warning: Couldn't load the binfmt_misc module. Setting up libxcb1:amd64 (1.13-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:amd64 (2:1.6.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.7-4) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up libcups2:amd64 (2.2.7-3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up default-jre-headless (2:1.10-65) ... Setting up openjdk-10-jre-headless:amd64 (10.0.1+10-3) ... update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-10-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode update-binfmts: warning: Couldn't load the binfmt_misc module. Setting up ca-certificates-java (20180413) ... Adding debian:GlobalSign_Root_CA.pem Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem. Message: /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F?tan?s?tv?ny.pem (No such file or directory) Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:AddTrust_External_Root.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:SecureTrust_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Secure_Global_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:AffirmTrust_Premium.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:DST_Root_CA_X3.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:ACCVRAIZ1.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:EC-ACC.pem Adding debian:ISRG_Root_X1.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Certigna.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Certplus_Class_2_Primary_CA.pem Warning: there was a problem reading the certificate file /etc/ssl/certs/T?RKTRUST_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?_H5.pem. Message: /etc/ssl/certs/T?RKTRUST_Elektronik_Sertifika_Hizmet_Sa?lay?c?s?_H5.pem (No such file or directory) Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:AffirmTrust_Networking.pem Adding debian:Izenpe.com.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Taiwan_GRCA.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:COMODO_Certification_Authority.pem done. Setting up dh-autoreconf (17) ... Setting up jaligner (1.0+dfsg-4) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1) ... Setting up mhap (2.1.3+dfsg-1) ... Setting up sbuild-build-depends-canu-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binfmt-support_2.1.8-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20180409 ca-certificates-java_20180413 clang-6.0_1:6.0-3 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 default-jre-headless_2:1.10-65 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fastjar_2:0.98-6+b1 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hostname_3.20 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 jaligner_1.0+dfsg-4 jarwrapper_0.63 java-common_0.65 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libapache-pom-java_18-1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libasan4_7.3.0-17 libatinject-jsr330-api-java_1.0+ds1-5 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libavahi-client3_0.7-4 libavahi-common-data_0.7-4 libavahi-common3_0.7-4 libbinutils_2.30-16 libblkid1_2.31.1-0.5 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-5+b1 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcommons-compress-java_1.13-2 libcommons-parent-java_43-1 libcroco3_0.6.12-2 libcups2_2.2.7-3 libdb5.3_5.3.28-13.1+b1 libdbus-1-3_1.12.8-1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfastutil-java_7.1.0-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libfilesys-df-perl_0.92-6+b3 libfreetype6_2.8.1-2 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libgssapi-krb5-2_1.16-2 libguava-java_19.0-1 libhogweed4_3.4-1 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjpeg62-turbo_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libjsr305-java_0.1~+svn49-10 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libkrb5-3_1.16-2 libkrb5support0_1.16-2 liblcms2-2_2.9-1 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmeryl-dev_0~20150903+r2013-3 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libnettle6_3.4-1 libnspr4_2:4.19-1 libnss3_2:3.36.1-1 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libpcsclite1_1.8.23-2 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libquadmath0_8-20180425-1 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0h-2 libssw-java_1.1-1+b1 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxau6_1:1.0.8-1+b2 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-6.1 libxrender1_1:0.9.10-1 libxtst6_2:1.2.3-1 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 lsb-base_9.20170808 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mhap_2.1.3+dfsg-1 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 openjdk-10-jre-headless_10.0.1+10-3 openssl_1.1.0h-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 po-debconf_1.0.20 sbuild-build-depends-canu-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 util-linux_2.31.1-0.5 x11-common_1:7.7+19 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 17 22:15:01 2018 UTC gpgv: using RSA key EAB723A266F627E68055615F59B2306F3AF9DDC1 gpgv: issuer "afif@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./canu_1.7+dfsg-1.dsc dpkg-source: info: extracting canu in /<>/canu-1.7+dfsg dpkg-source: info: unpacking canu_1.7+dfsg.orig.tar.gz dpkg-source: info: unpacking canu_1.7+dfsg-1.debian.tar.xz dpkg-source: info: applying use-debian-mhap-at-runtime.patch dpkg-source: info: applying gcc-7_format-security.patch dpkg-source: info: applying external-mhap.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-35ce83b4-b9ad-4b44-adf9-d7f469e719e6 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package canu dpkg-buildpackage: info: source version 1.7+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Afif Elghraoui dpkg-source --before-build canu-1.7+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --sourcedirectory=src/ dh_auto_clean -O--sourcedirectory=src/ cd src && make -j8 -Oline clean make[1]: Entering directory '/<>/canu-1.7+dfsg/src' WARNING: WARNING: GCC 4.2.1 detected, disabling stack trace support. Please upgrade to GCC 4.7 or higher. WARNING: Building for 'Linux' '4.9.0-5-amd64' as 'amd64' into '/<>/canu-1.7+dfsg/Linux-amd64/{bin,obj}' CC cc 4.2.1 CXX g++ 4.2.1 make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/lib/libcanu.a /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_global.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_decodeRange.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_fasta.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_fileIO.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_reverseComplement.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_stackTrace.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_alloc.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitEncodings.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitPackedFile.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitPackedArray.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/dnaAlphabets.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/hexDump.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/md5.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/memoryMappedFile.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/mt19937ar.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/readBuffer.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/speedCounter.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/sweatShop.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/timeAndSize.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/kMer.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/falcon_sense/libfalcon/falcon.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/correction/computeGlobalScore.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/correction/falconConsensus.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/correction/falconConsensus-alignTag.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/gkLibrary.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/gkStore.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/gkStoreConstructor.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/gkStoreEncode.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/gkStorePartition.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/ovOverlap.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/ovStore.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/ovStoreWriter.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/ovStoreFilter.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/ovStoreFile.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/ovStoreHistogram.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/tgStore.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/tgTig.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/tgTigSizeAnalysis.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/tgTigMultiAlignDisplay.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/libsnappy/snappy-sinksource.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/libsnappy/snappy-stubs-internal.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/stores/libsnappy/snappy.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libmeryl.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libsequence.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/overlapReadCache.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapErrorAdjustment/analyzeAlignment.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/Display_Alignment.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/overlapInCore/libedlib/edlib.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/NDalign.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/Binomial_Bound.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-addRead.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-appendBases.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-baseCall.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-refine.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abAbacus.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abColumn.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/abMultiAlign.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libcns/unitigConsensus.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/gfa/gfa.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/gfa/bed.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/existDB-create-from-fasta.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/existDB-create-from-meryl.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/existDB-create-from-sequence.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/existDB-state.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/existDB.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/positionDB-access.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/positionDB-dump.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/positionDB-file.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/positionDB-mismatch.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/positionDB-sort.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/meryl/libkmer/positionDB.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/dumpBlob /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/dumpBlob/stores/dumpBlob.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/gatekeeperCreate /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/gatekeeperCreate/stores/gatekeeperCreate.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/gatekeeperDumpFASTQ /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/gatekeeperDumpFASTQ/stores/gatekeeperDumpFASTQ.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/gatekeeperDumpMetaData /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/gatekeeperDumpMetaData/stores/gatekeeperDumpMetaData.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/gatekeeperPartition /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/gatekeeperPartition/stores/gatekeeperPartition.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/ovStoreBuild /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/ovStoreBuild/stores/ovStoreBuild.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/ovStoreSorter /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/ovStoreSorter/stores/ovStoreSorter.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/ovStoreBucketizer /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/ovStoreBucketizer/stores/ovStoreBucketizer.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/ovStoreIndexer /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/ovStoreIndexer/stores/ovStoreIndexer.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/ovStoreDump /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/ovStoreDump/stores/ovStoreDump.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/ovStoreStats /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/ovStoreStats/stores/ovStoreStats.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/tgStoreCompress /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgStoreCompress/stores/tgStoreCompress.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/tgStoreDump /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgStoreDump/stores/tgStoreDump.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgStoreDump/stores/tgTigSizeAnalysis.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/tgStoreLoad /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgStoreLoad/stores/tgStoreLoad.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/tgStoreFilter /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgStoreFilter/stores/tgStoreFilter.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/tgStoreCoverageStat /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgStoreCoverageStat/stores/tgStoreCoverageStat.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/tgTigDisplay /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/tgTigDisplay/stores/tgTigDisplay.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/loadCorrectedReads /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/loadCorrectedReads/stores/loadCorrectedReads.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/loadTrimmedReads /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/loadTrimmedReads/stores/loadTrimmedReads.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/lib/libleaff.a /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/fastaFile.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/fastaStdin.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/fastqFile.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/fastqStdin.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/gkStoreFile.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/merStream.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/seqCache.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/seqFactory.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/seqStore.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/seqStream.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libleaff.a/meryl/libleaff/sffFile.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/leaff /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff-blocks.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff-duplicates.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff-gc.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff-partition.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff-simulate.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff-statistics.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/leaff/meryl/leaff.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/meryl /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-args.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-binaryOp.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-build.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-dump.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-estimate.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-merge.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl-unaryOp.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/meryl/meryl/meryl.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/maskMers /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/maskMers/meryl/maskMers.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/sequence /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/sequence/meryl/sequence.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/simple /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/simple/meryl/simple.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/existDB /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/existDB/meryl/existDB.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/positionDB /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/positionDB/meryl/positionDB.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/estimate-mer-threshold /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/estimate-mer-threshold/meryl/estimate-mer-threshold.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/simple-dump /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/simple-dump/meryl/simple-dump.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/merTrim /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/merTrim/merTrim/merTrim.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/overlapInCore /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCore/overlapInCore/overlapInCore.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCore/overlapInCore/overlapInCore-Output.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCore/overlapInCore/overlapInCore-Process_Overlaps.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCore/overlapInCore/overlapInCore-Process_String_Overlaps.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/overlapInCorePartition /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapInCorePartition/overlapInCore/overlapInCorePartition.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/overlapConvert /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapConvert/overlapInCore/overlapConvert.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/overlapImport /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapImport/overlapInCore/overlapImport.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/overlapPair /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/overlapPair/overlapInCore/overlapPair.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/prefixEditDistance-matchLimitGenerate /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/prefixEditDistance-matchLimitGenerate/overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/edalign /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/edalign/overlapInCore/edalign.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/mhapConvert /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/mhapConvert/mhap/mhapConvert.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/mmapConvert /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/mmapConvert/minimap/mmapConvert.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/filterCorrectionOverlaps /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/filterCorrectionOverlaps/correction/filterCorrectionOverlaps.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/generateCorrectionLayouts /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/generateCorrectionLayouts/correction/generateCorrectionLayouts.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/generateCorrectionLayouts/utgcns/stashContains.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/generateCorrectionLayouts/falcon_sense/outputFalcon.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/filterCorrectionLayouts /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/filterCorrectionLayouts/correction/filterCorrectionLayouts.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/falconsense /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/falconsense/correction/falconsense.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/falconsense/utgcns/stashContains.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/readConsensus /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/readConsensus/correction/readConsensus.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/errorEstimate /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/errorEstimate/correction/errorEstimate.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/splitHaplotype /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitHaplotype/haplotyping/splitHaplotype.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/createFalconSenseInputs /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/createFalconSenseInputs/falcon_sense/createFalconSenseInputs.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/createFalconSenseInputs/falcon_sense/outputFalcon.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/falcon_sense /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/falcon_sense/falcon_sense/falcon_sense.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/trimReads /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/trimReads/overlapBasedTrimming/trimReads.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/trimReads/overlapBasedTrimming/trimReads-bestEdge.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/trimReads/overlapBasedTrimming/trimReads-largestCovered.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/trimReads/overlapBasedTrimming/trimReads-quality.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/splitReads /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitReads/overlapBasedTrimming/splitReads.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitReads/overlapBasedTrimming/splitReads-workUnit.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitReads/overlapBasedTrimming/splitReads-subReads.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitReads/overlapBasedTrimming/splitReads-trimBad.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitReads/overlapBasedTrimming/adjustNormal.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/splitReads/overlapBasedTrimming/adjustFlipped.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/findErrors /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Analyze_Alignment.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Output.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Prefix_Edit_Distance.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Process_Olap.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Read_Frags.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Read_Olaps.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/findErrors-Dump /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/findErrors-Dump/overlapErrorAdjustment/findErrors-Dump.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/correctOverlaps /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Correct_Frags.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Read_Olaps.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Redo_Olaps.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Prefix_Edit_Distance.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/bogart /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/bogart.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_AssemblyGraph.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_BestOverlapGraph.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_ChunkGraph.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_CreateUnitigs.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_DropDeadEnds.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_Instrumentation.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_Logging.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_MarkRepeatReads.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_MergeOrphans.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_OptimizePositions.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_Outputs.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_OverlapCache.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_PlaceContains.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_PlaceReadUsingOverlaps.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_PopulateUnitig.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_PromoteToSingleton.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_ReadInfo.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_SetParentAndHang.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_SplitDiscontinuous.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_TigGraph.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_TigVector.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_Unitig.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_Unitig_AddRead.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogart/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/bogus /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogus/bogus/bogus.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/bogus/bogus/bogusUtil.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/erateEstimate /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/erateEstimate/erateEstimate/erateEstimate.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/utgcns /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/utgcns/utgcns/utgcns.[doP] /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/utgcns/utgcns/stashContains.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/alignGFA /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/alignGFA/gfa/alignGFA.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/fastqAnalyze /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/fastqAnalyze/fastq-utilities/fastqAnalyze.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/fastqSample /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/fastqSample/fastq-utilities/fastqSample.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/fastqSimulate /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/fastqSimulate/fastq-utilities/fastqSimulate.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' make[1]: Entering directory '/<>/canu-1.7+dfsg/src' rm -f /<>/canu-1.7+dfsg/Linux-amd64/bin/fastqSimulate-sort /<>/canu-1.7+dfsg/Linux-amd64/obj/bin/fastqSimulate-sort/fastq-utilities/fastqSimulate-sort.[doP] make[1]: Leaving directory '/<>/canu-1.7+dfsg/src' dh_clean -O--sourcedirectory=src/ debian/rules build-arch dh build-arch --sourcedirectory=src/ dh_update_autotools_config -a -O--sourcedirectory=src/ dh_autoreconf -a -O--sourcedirectory=src/ dh_auto_configure -a -O--sourcedirectory=src/ debian/rules override_dh_auto_build make[1]: Entering directory '/<>/canu-1.7+dfsg' dh_auto_build cd src && make -j8 -Oline make[2]: Entering directory '/<>/canu-1.7+dfsg/src' WARNING: WARNING: GCC 4.2.1 detected, disabling stack trace support. Please upgrade to GCC 4.7 or higher. WARNING: Building for 'Linux' '4.9.0-5-amd64' as 'amd64' into '/<>/canu-1.7+dfsg/Linux-amd64/{bin,obj}' CC cc 4.2.1 CXX g++ 4.2.1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' Building snapshot v1.7 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitEncodings.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitEncodings.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/bitEncodings.C:26: In file included from AS_UTL/bitEncodings.H:26: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitEncodings.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_reverseComplement.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_reverseComplement.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/AS_UTL_reverseComplement.C:34: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_reverseComplement.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_alloc.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_alloc.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/AS_UTL_alloc.C:34: In file included from AS_UTL/AS_UTL_alloc.H:37: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_alloc.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_stackTrace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_stackTrace.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/AS_UTL_stackTrace.C:34: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_stackTrace.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_decodeRange.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_decodeRange.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/AS_UTL_decodeRange.C:34: In file included from AS_UTL/AS_UTL_decodeRange.H:33: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_decodeRange.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_fasta.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_fasta.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/AS_UTL_fasta.C:42: In file included from AS_UTL/AS_UTL_fasta.H:37: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_fasta.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_fileIO.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_fileIO.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/AS_UTL_fileIO.C:38: In file included from AS_UTL/AS_UTL_fileIO.H:37: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/AS_UTL_fileIO.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' make[2]: Entering directory '/<>/canu-1.7+dfsg/src' g++ -o /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitPackedFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DNOBACKTRACE -I/<>/canu-1.7+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitPackedFile.C clang: warning: -O4 is equivalent to -O3 [-Wdeprecated] clang: warning: optimization flag '-fexpensive-optimizations' is not supported [-Wignored-optimization-argument] In file included from AS_UTL/bitPackedFile.C:46: /<>/canu-1.7+dfsg/src/AS_global.H:94:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:658: /<>/canu-1.7+dfsg/Linux-amd64/obj/lib/libcanu.a/AS_UTL/bitPackedFile.o] Error 1 make[2]: Leaving directory '/<>/canu-1.7+dfsg/src' dh_auto_build: cd src && make -j8 -Oline returned exit code 2 make[1]: *** [debian/rules:16: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>/canu-1.7+dfsg' make: *** [debian/rules:13: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T13:14:50Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 7820 Build-Time: 3 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 19 Job: canu_1.7+dfsg-1 Machine Architecture: amd64 Package: canu Package-Time: 35 Source-Version: 1.7+dfsg-1 Space: 7820 Status: attempted Version: 1.7+dfsg-1 -------------------------------------------------------------------------------- Finished at 2018-05-02T13:14:50Z Build needed 00:00:35, 7820k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 36.890297324s DC-Time-Estimation: 36.890297324 versus expected 87 (r/m: 1.3583436922694507 ; m: 36.890297324)