DC-Build-Header: hinge 0.5.0-3 / 2018-05-02 11:59:26 +0000 DC-Task: type:rebuild-binarch-only source:hinge version:0.5.0-3 chroot:unstable esttime: logfile:/tmp/hinge_0.5.0-3_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 hinge_0.5.0-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-15-38.eu-central-1.compute.internal +==============================================================================+ | hinge 0.5.0-3 (amd64) Wed, 02 May 2018 11:59:26 +0000 | +==============================================================================+ Package: hinge Version: 0.5.0-3 Source Version: 0.5.0-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-aeb238d5-bc24-407e-9d7c-febc04f64cfe' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (3408 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (95.3 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/hinge-lMmDB4 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'hinge' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/hinge.git Please use: git clone https://anonscm.debian.org/git/debian-med/hinge.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 484 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main hinge 0.5.0-3 (dsc) [2166 B] Get:2 http://127.0.0.1:9999/debian unstable/main hinge 0.5.0-3 (tar) [477 kB] Get:3 http://127.0.0.1:9999/debian unstable/main hinge 0.5.0-3 (diff) [4892 B] Fetched 484 kB in 0s (3588 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/hinge-lMmDB4/hinge-0.5.0' with '<>' I: NOTICE: Log filtering will replace 'build/hinge-lMmDB4' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-TdXG3Z/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-TdXG3Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TdXG3Z/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-TdXG3Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TdXG3Z/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-TdXG3Z/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-TdXG3Z/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib Filtered Build-Depends: debhelper (>= 9), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib dpkg-deb: building package 'sbuild-build-depends-hinge-dummy' in '/<>/resolver-TdXG3Z/apt_archive/sbuild-build-depends-hinge-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-hinge-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-TdXG3Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TdXG3Z/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-TdXG3Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TdXG3Z/apt_archive ./ Sources [603 B] Get:5 copy:/<>/resolver-TdXG3Z/apt_archive ./ Packages [687 B] Fetched 2253 B in 0s (0 B/s) Reading package lists... Reading package lists... Install hinge build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data daligner dascrubber dazzdb debhelper dh-autoreconf dh-strip-nondeterminism file fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3 libboost-chrono1.62.0 libboost-dev libboost-graph-dev libboost-graph1.62-dev libboost-graph1.62.0 libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system1.62.0 libboost-test1.62-dev libboost-test1.62.0 libboost-timer1.62.0 libboost1.62-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libglib2.0-0 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhts2 libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libpipeline1 libpng16-16 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspdlog-dev libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libsz2 libtimedate-perl libtool libuv1 libxml2 libyaml-0-2 lsb-base m4 man-db mime-support pandoc pandoc-data po-debconf procps python python-appdirs python-backports.functools-lru-cache python-colorama python-colormap python-configparser python-cycler python-dateutil python-decorator python-easydev python-h5py python-kiwisolver python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbcore python-pexpect python-pkg-resources python-ptyprocess python-pyparsing python-pysam python-six python-subprocess32 python-tz python-ujson python2.7 python2.7-minimal readline-common ttf-bitstream-vera tzdata zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc graphviz libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libhdf5-doc libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php ruby r-base-core libmail-box-perl python-doc python-tk python-cycler-doc python-h5py-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-nose python-qt4 python-scipy python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils ttf-staypuft python-networkx-doc gfortran python-dev python-numpy-dbg python-numpy-doc python-pbcore-doc python-pexpect-doc python-setuptools python-pyparsing-doc python2.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc python-pil python-tk python-pygraphviz | python-pydot python-scipy python-yaml The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data daligner dascrubber dazzdb debhelper dh-autoreconf dh-strip-nondeterminism file fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3 libboost-chrono1.62.0 libboost-dev libboost-graph-dev libboost-graph1.62-dev libboost-graph1.62.0 libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system1.62.0 libboost-test1.62-dev libboost-test1.62.0 libboost-timer1.62.0 libboost1.62-dev libcroco3 libcurl3 libcurl3-gnutls libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libglib2.0-0 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhts2 libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libncursesw6 libnghttp2-14 libpipeline1 libpng16-16 libprocps6 libpsl5 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspdlog-dev libsqlite3-0 libssh2-1 libssl1.0.2 libssl1.1 libsz2 libtimedate-perl libtool libuv1 libxml2 libyaml-0-2 lsb-base m4 man-db mime-support pandoc pandoc-data po-debconf procps python python-appdirs python-backports.functools-lru-cache python-colorama python-colormap python-configparser python-cycler python-dateutil python-decorator python-easydev python-h5py python-kiwisolver python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbcore python-pexpect python-pkg-resources python-ptyprocess python-pyparsing python-pysam python-six python-subprocess32 python-tz python-ujson python2.7 python2.7-minimal readline-common sbuild-build-depends-hinge-dummy ttf-bitstream-vera tzdata zlib1g-dev 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. Need to get 93.7 MB of archives. After this operation, 480 MB of additional disk space will be used. Get:1 copy:/<>/resolver-TdXG3Z/apt_archive ./ sbuild-build-depends-hinge-dummy 0.invalid.0 [972 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.15-1 [393 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.15-1 [1353 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.15~rc1-1 [41.1 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libncursesw6 amd64 6.1+20180210-2 [131 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3+b1 [151 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.23.1-1 [603 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0h-2 [1352 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.15-1 [1912 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.15-1 [298 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.15~rc1-1 [20.5 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.15~rc1-1 [155 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 tzdata all 2018d-1 [252 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.14-1 [60.4 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20170808 [28.1 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.14-1 [257 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.11.1-1 [1386 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.2-3.1 [296 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3.1 [68.6 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3.1 [105 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.45+dfsg-1 [87.0 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.45+dfsg-1 [223 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.31.1-1 [80.7 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.20.1-1 [52.6 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2o-1 [1296 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.58.0-2 [312 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 librhash0 amd64 1.3.6-2 [87.1 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libuv1 amd64 1.18.0-3 [98.5 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.11.1-1 [3190 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 daligner amd64 1.0+20180108-1 [177 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 dascrubber amd64 0~20180108-1 [150 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 dazzdb amd64 1.0+20180115-1 [170 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 fonts-lyx all 2.3.0-2 [198 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 hdf5-helpers amd64 1.10.0-patch1+docs-4+b1 [36.3 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran4 amd64 7.3.0-17 [487 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.8.0-1 [150 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-5+b1 [32.9 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-5+b1 [36.5 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-5+b1 [7004 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-5+b1 [289 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph1.62.0 amd64 1.62.0+dfsg-5+b1 [119 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-5+b1 [126 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62-dev amd64 1.62.0+dfsg-5+b1 [164 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libboost-timer1.62.0 amd64 1.62.0+dfsg-5+b1 [34.9 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.62.0 amd64 1.62.0+dfsg-5+b1 [255 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libboost-test1.62-dev amd64 1.62.0+dfsg-5+b1 [302 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph1.62-dev amd64 1.62.0+dfsg-5+b1 [128 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libboost-graph-dev amd64 1.62.0.1 [3510 B] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3-gnutls amd64 7.58.0-2 [310 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.34-1 [287 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8.1-2 [461 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4+b1 [1284 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-4+b1 [129 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+b1 [208 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-dev amd64 1.10.0-patch1+docs-4+b1 [2529 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libhts2 amd64 1.7-2 [311 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libjs-jquery all 3.2.1-1 [154 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libjs-sphinxdoc all 1.7.4-1 [89.7 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.8.0-1 [2146 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libspdlog-dev amd64 1:0.16.3-1 [143 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 pandoc-data all 2.2-1 [328 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 pandoc amd64 2.2-1 [14.9 MB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 python-appdirs all 1.4.3-1 [12.0 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 python-backports.functools-lru-cache all 1.4-2 [6032 B] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 python-colorama all 0.3.7-1 [25.7 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 python-six all 1.11.0-2 [15.1 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 python-dateutil all 2.6.1-1 [61.1 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 python-matplotlib-data all 2.2.2-2 [4136 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 python-tz all 2018.4-1 [33.5 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 python-numpy amd64 1:1.13.3-2 [1950 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 python-cycler all 0.10.0-1 [7448 B] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 python-pkg-resources all 39.0.1-2 [171 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 python-kiwisolver amd64 1.0.1-2 [66.9 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 python-subprocess32 amd64 3.2.7-3 [29.5 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 python-matplotlib amd64 2.2.2-2 [5056 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 python-ptyprocess all 0.5.2-1 [12.5 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 python-pexpect all 4.2.1-1 [47.9 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 python-easydev all 0.9.35+dfsg-2 [39.7 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 python-colormap all 1.0.1-2 [14.7 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 python-configparser all 3.5.0-1 [60.4 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 python-decorator all 4.1.2-1 [13.7 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 python-h5py amd64 2.7.1-2 [683 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 python-networkx all 1.11-2 [822 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 python-pysam amd64 0.14+ds-2 [1617 kB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 python-pbcore all 1.2.11+dfsg-1 [9087 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 python-ujson amd64 1.35-2 [22.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.7 MB in 1s (69.9 MB/s) Selecting previously unselected package bsdmainutils. 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Preparing to unpack .../120-sbuild-build-depends-hinge-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-hinge-dummy (0.invalid.0) ... Setting up libjs-jquery (3.2.1-1) ... Setting up libboost-serialization1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up readline-common (7.0-3) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libexpat1:amd64 (2.2.5-3) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libnghttp2-14:amd64 (1.31.1-1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up mime-support (3.60) ... Setting up libgfortran4:amd64 (7.3.0-17) ... Setting up libboost1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libpng16-16:amd64 (1.6.34-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libldap-common (2.4.45+dfsg-1) ... Setting up libuv1:amd64 (1.18.0-3) ... Setting up libreadline7:amd64 (7.0-3+b1) ... Setting up libpsl5:amd64 (0.20.1-1) ... Setting up tzdata (2018d-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed May 2 11:59:58 UTC 2018. Universal Time is now: Wed May 2 11:59:58 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dazzdb (1.0+20180115-1) ... Setting up groff-base (1.22.3-10) ... Setting up daligner (1.0+20180108-1) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libncursesw6:amd64 (6.1+20180210-2) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Setting up pandoc-data (2.2-1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Setting up libjs-sphinxdoc (1.7.4-1) ... Setting up dascrubber (0~20180108-1) ... Setting up gettext-base (0.19.8.1-6) ... Setting up cmake-data (3.11.1-1) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-9) ... Setting up libprocps6:amd64 (2:3.3.14-1) ... Setting up libboost-serialization1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up libfreetype6:amd64 (2.8.1-2) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up lsb-base (9.20170808) ... Setting up librhash0:amd64 (1.3.6-2) ... Setting up procps (2:3.3.14-1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libssl1.0.2:amd64 (1.0.2o-1) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libblas3:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libssh2-1:amd64 (1.8.0-1) ... Processing triggers for libc-bin (2.27-3) ... Setting up libspdlog-dev (1:0.16.3-1) ... Setting up autotools-dev (20180224.1) ... Setting up libldap-2.4-2:amd64 (2.4.45+dfsg-1) ... Setting up libssl1.1:amd64 (1.1.0h-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libsqlite3-0:amd64 (3.23.1-1) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libboost-dev:amd64 (1.62.0.1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+b1) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up hdf5-helpers (1.10.0-patch1+docs-4+b1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-1) ... Setting up autopoint (0.19.8.1-6) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up fonts-lyx (2.3.0-2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4+b1) ... Setting up python-matplotlib-data (2.2.2-2) ... Setting up pandoc (2.2-1) ... Setting up gettext (0.19.8.1-6) ... Setting up libarchive13:amd64 (3.2.2-3.1) ... Setting up liblapack3:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-regex1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up python2.7 (2.7.15-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up libpython-stdlib:amd64 (2.7.15~rc1-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python (2.7.15~rc1-1) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up libtool (2.4.6-2.1) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-4+b1) ... Setting up libboost-timer1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up po-debconf (1.0.20) ... Setting up libboost-graph1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up python-backports.functools-lru-cache (1.4-2) ... Setting up python-ujson (1.35-2) ... Setting up python-tz (2018.4-1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python-colorama (0.3.7-1) ... Setting up python-pkg-resources (39.0.1-2) ... Setting up python-numpy (1:1.13.3-2) ... Setting up python-configparser (3.5.0-1) ... Setting up python-six (1.11.0-2) ... Setting up python-ptyprocess (0.5.2-1) ... Setting up libboost-test1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up python-appdirs (1.4.3-1) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up python-decorator (4.1.2-1) ... Setting up python-subprocess32 (3.2.7-3) ... Setting up python-h5py (2.7.1-2) ... Setting up python-networkx (1.11-2) ... Setting up python-kiwisolver (1.0.1-2) ... Setting up python-pexpect (4.2.1-1) ... Setting up libboost-test1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up python-cycler (0.10.0-1) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up python-dateutil (2.6.1-1) ... Setting up python-easydev (0.9.35+dfsg-2) ... Setting up libcurl3:amd64 (7.58.0-2) ... Setting up libcurl3-gnutls:amd64 (7.58.0-2) ... Setting up libboost-graph1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up python-matplotlib (2.2.2-2) ... Setting up cmake (3.11.1-1) ... Setting up libhts2:amd64 (1.7-2) ... Setting up python-colormap (1.0.1-2) ... Setting up libboost-graph-dev:amd64 (1.62.0.1) ... Setting up python-pysam (0.14+ds-2) ... Setting up python-pbcore (1.2.11+dfsg-1) ... Setting up debhelper (11.2.1) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up sbuild-build-depends-hinge-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 cmake_3.11.1-1 cmake-data_3.11.1-1 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 daligner_1.0+20180108-1 dascrubber_0~20180108-1 dash_0.5.8-2.10 dazzdb_1.0+20180115-1 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 fonts-lyx_2.3.0-2 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hdf5-helpers_1.10.0-patch1+docs-4+b1 hostname_3.20 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-16 libblas3_3.8.0-1 libblkid1_2.31.1-0.5 libboost-chrono1.62.0_1.62.0+dfsg-5+b1 libboost-dev_1.62.0.1 libboost-graph-dev_1.62.0.1 libboost-graph1.62-dev_1.62.0+dfsg-5+b1 libboost-graph1.62.0_1.62.0+dfsg-5+b1 libboost-regex1.62.0_1.62.0+dfsg-5+b1 libboost-serialization1.62-dev_1.62.0+dfsg-5+b1 libboost-serialization1.62.0_1.62.0+dfsg-5+b1 libboost-system1.62.0_1.62.0+dfsg-5+b1 libboost-test1.62-dev_1.62.0+dfsg-5+b1 libboost-test1.62.0_1.62.0+dfsg-5+b1 libboost-timer1.62.0_1.62.0+dfsg-5+b1 libboost1.62-dev_1.62.0+dfsg-5+b1 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcurl3_7.58.0-2 libcurl3-gnutls_7.58.0-2 libdb5.3_5.3.28-13.1+b1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libfreetype6_2.8.1-2 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-17 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libgssapi-krb5-2_1.16-2 libhdf5-100_1.10.0-patch1+docs-4+b1 libhdf5-cpp-100_1.10.0-patch1+docs-4+b1 libhdf5-dev_1.10.0-patch1+docs-4+b1 libhogweed4_3.4-1 libhts2_1.7-2 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.7.4-1 libjs-underscore_1.8.3~dfsg-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libkrb5-3_1.16-2 libkrb5support0_1.16-2 liblapack3_3.8.0-1 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 liblua5.1-0_5.1.5-8.1+b2 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2+b2 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libncursesw6_6.1+20180210-2 libnettle6_3.4-1 libnghttp2-14_1.31.1-1 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.14-1 libpsl5_0.20.1-1 libpython-stdlib_2.7.15~rc1-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libquadmath0_8-20180425-1 libreadline7_7.0-3+b1 librhash0_1.3.6-2 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libspdlog-dev_1:0.16.3-1 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libsz2_1.0.2-1 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libuv1_1.18.0-3 libxml2_2.9.4+dfsg1-6.1 libyaml-0-2_0.1.7-2 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 lsb-base_9.20170808 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 pandoc_2.2-1 pandoc-data_2.2-1 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 po-debconf_1.0.20 procps_2:3.3.14-1 python_2.7.15~rc1-1 python-appdirs_1.4.3-1 python-backports.functools-lru-cache_1.4-2 python-colorama_0.3.7-1 python-colormap_1.0.1-2 python-configparser_3.5.0-1 python-cycler_0.10.0-1 python-dateutil_2.6.1-1 python-decorator_4.1.2-1 python-easydev_0.9.35+dfsg-2 python-h5py_2.7.1-2 python-kiwisolver_1.0.1-2 python-matplotlib_2.2.2-2 python-matplotlib-data_2.2.2-2 python-minimal_2.7.15~rc1-1 python-networkx_1.11-2 python-numpy_1:1.13.3-2 python-pbcore_1.2.11+dfsg-1 python-pexpect_4.2.1-1 python-pkg-resources_39.0.1-2 python-ptyprocess_0.5.2-1 python-pyparsing_2.2.0+dfsg1-2 python-pysam_0.14+ds-2 python-six_1.11.0-2 python-subprocess32_3.2.7-3 python-tz_2018.4-1 python-ujson_1.35-2 python2.7_2.7.15-1 python2.7-minimal_2.7.15-1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hinge-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 ttf-bitstream-vera_1.10-8 tzdata_2018d-1 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 4 19:09:19 2018 UTC gpgv: using RSA key EAB723A266F627E68055615F59B2306F3AF9DDC1 gpgv: issuer "afif@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hinge_0.5.0-3.dsc dpkg-source: info: extracting hinge in /<> dpkg-source: info: unpacking hinge_0.5.0.orig.tar.gz dpkg-source: info: unpacking hinge_0.5.0-3.debian.tar.xz dpkg-source: info: applying external-spdlog.patch dpkg-source: info: applying libspdlog-14.0.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-aeb238d5-bc24-407e-9d7c-febc04f64cfe SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hinge dpkg-buildpackage: info: source version 0.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Afif Elghraoui dpkg-source --before-build hinge-0.5.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build-arch dh build-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_auto_configure -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -- The C compiler identification is Clang 6.0.0 -- The CXX compiler identification is Clang 6.0.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Boost version: 1.62.0 -- Found the following Boost libraries: -- graph -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -a -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin /<>/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= Scanning dependencies of target man make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Generating hinge.1 cd /<>/obj-x86_64-linux-gnu/bin && /usr/bin/pandoc --from markdown --to man -s /<>/src/hinge.1.md -o hinge.1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target man make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= Scanning dependencies of target kmer_lookup make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building C object bin/lib/CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -c /<>/src/lib/kmer_lookup.c /<>/src/lib/kmer_lookup.c:372:18: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value] if ( abs( ( (d - d_min)/ (long int) bin_size ) - max_k_mer_bin ) > 5 ) { ^ /<>/src/lib/kmer_lookup.c:372:18: note: use function 'labs' instead if ( abs( ( (d - d_min)/ (long int) bin_size ) - max_k_mer_bin ) > 5 ) { ^~~ labs 1 warning generated. [ 10%] Linking C static library libkmer_lookup.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/kmer_lookup.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kmer_lookup.dir/link.txt --verbose=1 /usr/bin/ar qc libkmer_lookup.a CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o /usr/bin/ranlib libkmer_lookup.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target kmer_lookup make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= Scanning dependencies of target DW_banded make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 13%] Building C object bin/lib/CMakeFiles/DW_banded.dir/DW_banded.c.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DW_banded.dir/DW_banded.c.o -c /<>/src/lib/DW_banded.c /<>/src/lib/DW_banded.c:172:47: warning: '&&' within '||' [-Wlogical-op-parentheses] if ( (k == min_k) || (k != max_k) && (V[ k - 1 + k_offset ] < V[ k + 1 + k_offset]) ) { ~~ ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/lib/DW_banded.c:172:47: note: place parentheses around the '&&' expression to silence this warning if ( (k == min_k) || (k != max_k) && (V[ k - 1 + k_offset ] < V[ k + 1 + k_offset]) ) { ^ ( ) 1 warning generated. [ 17%] Linking C static library libDW_banded.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DW_banded.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DW_banded.dir/link.txt --verbose=1 /usr/bin/ar qc libDW_banded.a CMakeFiles/DW_banded.dir/DW_banded.c.o /usr/bin/ranlib libDW_banded.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 17%] Built target DW_banded make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= Scanning dependencies of target falcon make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/falcon.dir/build.make 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CMakeFiles/PAF.dir/link.txt --verbose=1 /usr/bin/ar qc libPAF.a CMakeFiles/PAF.dir/paf.c.o /usr/bin/ranlib libPAF.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target PAF make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= Scanning dependencies of target ini make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 34%] Building C object bin/lib/CMakeFiles/ini.dir/ini.c.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/ini.dir/ini.c.o -c /<>/src/lib/ini.c [ 37%] Building CXX object bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/ini.dir/INIReader.cpp.o -c /<>/src/lib/INIReader.cpp [ 41%] Linking CXX static library libini.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/ini.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/ini.dir/link.txt --verbose=1 /usr/bin/ar qc libini.a CMakeFiles/ini.dir/ini.c.o CMakeFiles/ini.dir/INIReader.cpp.o /usr/bin/ranlib libini.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target ini make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= Scanning dependencies of target LA make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building C object bin/lib/CMakeFiles/LA.dir/align.c.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/LA.dir/align.c.o -c /<>/src/lib/align.c [ 48%] Linking C static library libLA.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LA.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LA.dir/link.txt --verbose=1 /usr/bin/ar qc libLA.a CMakeFiles/LA.dir/align.c.o /usr/bin/ranlib libLA.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target LA make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= Scanning dependencies of target DB make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 51%] Building C object bin/lib/CMakeFiles/DB.dir/DB.c.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/DB.c.o -c /<>/src/lib/DB.c /<>/src/lib/DB.c:920:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/lib/DB.c:925:13: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/lib/DB.c:916:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(istub,DB_NFILE,&nfiles); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~ 3 warnings generated. [ 55%] Building C object bin/lib/CMakeFiles/DB.dir/QV.c.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/QV.c.o -c /<>/src/lib/QV.c [ 58%] Linking C static library libDB.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DB.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DB.dir/link.txt --verbose=1 /usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o /usr/bin/ranlib libDB.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target DB make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= Scanning dependencies of target LAInterface make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object bin/lib/CMakeFiles/LAInterface.dir/LAInterface.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/LAInterface.dir/LAInterface.cpp.o -c /<>/src/lib/LAInterface.cpp /<>/src/lib/LAInterface.cpp:1666:45: warning: format specifies type 'int' but the argument has type 'long long' [-Wformat] printf("%d percent finished\n", j/(novl/100)); ~~ ^~~~~~~~~~~~ %lld 1 warning generated. [ 65%] Linking CXX static library libLAInterface.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LAInterface.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LAInterface.dir/link.txt --verbose=1 /usr/bin/ar qc libLAInterface.a CMakeFiles/LAInterface.dir/LAInterface.cpp.o /usr/bin/ranlib libLAInterface.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/filter /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/filter /<>/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= Scanning dependencies of target Reads_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/filter && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/Reads_filter.dir/filter.cpp.o -c /<>/src/filter/filter.cpp /<>/src/filter/filter.cpp:16:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[3]: *** [bin/filter/CMakeFiles/Reads_filter.dir/build.make:66: bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o] Error 1 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:496: bin/filter/CMakeFiles/Reads_filter.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:133: all] Error 2 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_build: cd obj-x86_64-linux-gnu && make -j1 returned exit code 2 make: *** [debian/rules:5: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T12:00:14Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 6568 Build-Time: 11 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 22 Job: hinge_0.5.0-3 Machine Architecture: amd64 Package: hinge Package-Time: 48 Source-Version: 0.5.0-3 Space: 6568 Status: attempted Version: 0.5.0-3 -------------------------------------------------------------------------------- Finished at 2018-05-02T12:00:14Z Build needed 00:00:48, 6568k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 49.439682156s DC-Time-Estimation: 49.439682156 versus expected 1 (r/m: 48.439682156 ; m: 1.0)