DC-Build-Header: libbpp-phyl-omics 2.4.0-2 / 2018-05-02 13:29:42 +0000 DC-Task: type:rebuild-binarch-only source:libbpp-phyl-omics version:2.4.0-2 chroot:unstable esttime:33 logfile:/tmp/libbpp-phyl-omics_2.4.0-2_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 libbpp-phyl-omics_2.4.0-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-10-126.eu-central-1.compute.internal +==============================================================================+ | libbpp-phyl-omics 2.4.0-2 (amd64) Wed, 02 May 2018 13:29:42 +0000 | +==============================================================================+ Package: libbpp-phyl-omics Version: 2.4.0-2 Source Version: 2.4.0-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-ada2744b-16be-4089-8b28-ca9c225283c2' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (3383 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (97.7 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/libbpp-phyl-omics-PmgYxO + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libbpp-phyl-omics' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbpp-phyl-omics.git Please use: git clone https://salsa.debian.org/med-team/libbpp-phyl-omics.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 64.1 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main libbpp-phyl-omics 2.4.0-2 (dsc) [2256 B] Get:2 http://127.0.0.1:9999/debian unstable/main libbpp-phyl-omics 2.4.0-2 (tar) [48.4 kB] Get:3 http://127.0.0.1:9999/debian unstable/main libbpp-phyl-omics 2.4.0-2 (diff) [13.4 kB] Fetched 64.1 kB in 0s (432 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-PmgYxO/libbpp-phyl-omics-2.4.0' with '<>' I: NOTICE: Log filtering will replace 'build/libbpp-phyl-omics-PmgYxO' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BKymWP/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-BKymWP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BKymWP/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-BKymWP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BKymWP/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-BKymWP/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BKymWP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-phyl-dev (>= 2.4.0), libbpp-seq-omics-dev (>= 2.4.0) Filtered Build-Depends: debhelper (>= 11~), cmake, d-shlibs (>= 0.82), libbpp-phyl-dev (>= 2.4.0), libbpp-seq-omics-dev (>= 2.4.0) dpkg-deb: building package 'sbuild-build-depends-libbpp-phyl-omics-dummy' in '/<>/resolver-BKymWP/apt_archive/sbuild-build-depends-libbpp-phyl-omics-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libbpp-phyl-omics-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-BKymWP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BKymWP/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-BKymWP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BKymWP/apt_archive ./ Sources [532 B] Get:5 copy:/<>/resolver-BKymWP/apt_archive ./ Packages [615 B] Fetched 2110 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libbpp-phyl-omics build dependencies (apt-based resolver) ----------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq12 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db po-debconf procps Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-seq-dev libbpp-seq-omics-dev libbpp-seq-omics3 libbpp-seq12 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libprocps6 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1 libxml2 lsb-base m4 man-db po-debconf procps sbuild-build-depends-libbpp-phyl-omics-dummy 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 36.2 MB of archives. After this operation, 177 MB of additional disk space will be used. Get:1 copy:/<>/resolver-BKymWP/apt_archive ./ sbuild-build-depends-libbpp-phyl-omics-dummy 0.invalid.0 [904 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libprocps6 amd64 2:3.3.14-1 [60.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20170808 [28.1 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 procps amd64 2:3.3.14-1 [257 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.11.1-1 [1386 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.2-3.1 [296 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3.1 [68.6 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3.1 [105 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.45+dfsg-1 [87.0 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.45+dfsg-1 [223 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.31.1-1 [80.7 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.20.1-1 [52.6 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2o-1 [1296 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.58.0-2 [312 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 librhash0 amd64 1.3.6-2 [87.1 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libuv1 amd64 1.18.0-3 [98.5 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.11.1-1 [3190 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 d-shlibs all 0.82 [18.8 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-core4 amd64 2.4.0-3 [607 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-core-dev amd64 2.4.0-3 [914 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-seq12 amd64 2.4.0-2 [517 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-phyl12 amd64 2.4.0-2 [1602 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-seq-dev amd64 2.4.0-2 [725 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-phyl-dev amd64 2.4.0-2 [2827 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-seq-omics3 amd64 2.4.0-2 [222 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libbpp-seq-omics-dev amd64 2.4.0-2 [370 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.2 MB in 0s (77.4 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2_amd64.deb ... Unpacking bsdmainutils (11.1.2) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../04-libprocps6_2%3a3.3.14-1_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.14-1) ... Selecting previously unselected package lsb-base. Preparing to unpack .../05-lsb-base_9.20170808_all.deb ... Unpacking lsb-base (9.20170808) ... Selecting previously unselected package procps. 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Selecting previously unselected package libbpp-seq-omics-dev. Preparing to unpack .../61-libbpp-seq-omics-dev_2.4.0-2_amd64.deb ... Unpacking libbpp-seq-omics-dev (2.4.0-2) ... Selecting previously unselected package sbuild-build-depends-libbpp-phyl-omics-dummy. Preparing to unpack .../62-sbuild-build-depends-libbpp-phyl-omics-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-libbpp-phyl-omics-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.5-3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libnghttp2-14:amd64 (1.31.1-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libldap-common (2.4.45+dfsg-1) ... Setting up libuv1:amd64 (1.18.0-3) ... Setting up libpsl5:amd64 (0.20.1-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3.1) ... Setting up d-shlibs (0.82) ... Setting up gettext-base (0.19.8.1-6) ... Setting up cmake-data (3.11.1-1) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1+b1) ... Setting up m4 (1.4.18-1) ... Setting up libbpp-core4:amd64 (2.4.0-3) ... Setting up libicu57:amd64 (57.1-9) ... Setting up libprocps6:amd64 (2:3.3.14-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up lsb-base (9.20170808) ... Setting up librhash0:amd64 (1.3.6-2) ... Setting up procps (2:3.3.14-1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libssl1.0.2:amd64 (1.0.2o-1) ... Setting up libssh2-1:amd64 (1.8.0-1) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up libldap-2.4-2:amd64 (2.4.45+dfsg-1) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up libbpp-seq12:amd64 (2.4.0-2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6) ... Setting up libbpp-phyl12:amd64 (2.4.0-2) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up gettext (0.19.8.1-6) ... Setting up libarchive13:amd64 (3.2.2-3.1) ... Setting up libbpp-core-dev (2.4.0-3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libbpp-seq-omics3:amd64 (2.4.0-2) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libbpp-seq-dev (2.4.0-2) ... Setting up po-debconf (1.0.20) ... Setting up libbpp-phyl-dev (2.4.0-2) ... Setting up libbpp-seq-omics-dev (2.4.0-2) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up libcurl3:amd64 (7.58.0-2) ... Setting up cmake (3.11.1-1) ... Setting up debhelper (11.2.1) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up sbuild-build-depends-libbpp-phyl-omics-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 cmake_3.11.1-1 cmake-data_3.11.1-1 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hostname_3.20 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-16 libblkid1_2.31.1-0.5 libbpp-core-dev_2.4.0-3 libbpp-core4_2.4.0-3 libbpp-phyl-dev_2.4.0-2 libbpp-phyl12_2.4.0-2 libbpp-seq-dev_2.4.0-2 libbpp-seq-omics-dev_2.4.0-2 libbpp-seq-omics3_2.4.0-2 libbpp-seq12_2.4.0-2 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcurl3_7.58.0-2 libdb5.3_5.3.28-13.1+b1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libgssapi-krb5-2_1.16-2 libhogweed4_3.4-1 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2+b2 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libnettle6_3.4-1 libnghttp2-14_1.31.1-1 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libprocps6_2:3.3.14-1 libpsl5_0.20.1-1 libquadmath0_8-20180425-1 librhash0_1.3.6-2 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libss2_1.44.1-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2o-1 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libuv1_1.18.0-3 libxml2_2.9.4+dfsg1-6.1 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 lsb-base_9.20170808 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 po-debconf_1.0.20 procps_2:3.3.14-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libbpp-phyl-omics-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 8 16:36:02 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libbpp-phyl-omics_2.4.0-2.dsc dpkg-source: info: extracting libbpp-phyl-omics in /<> dpkg-source: info: unpacking libbpp-phyl-omics_2.4.0.orig.tar.gz dpkg-source: info: unpacking libbpp-phyl-omics_2.4.0-2.debian.tar.xz dpkg-source: info: applying unforce-cxxflags.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-ada2744b-16be-4089-8b28-ca9c225283c2 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libbpp-phyl-omics dpkg-buildpackage: info: source version 2.4.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Julien Dutheil dpkg-source --before-build libbpp-phyl-omics-2.4.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -- The CXX compiler identification is Clang 6.0.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.0.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-seq-omics 3.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j8 -Oline "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 all make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/depend make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-phyl-omics-static.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-phyl-omics-static make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake --color= Scanning dependencies of target bpp-phyl-omics-shared make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 30%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 35%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 40%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 45%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 55%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 60%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 65%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 90%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c 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directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /<>/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 95%] Linking CXX static library libbpp-phyl-omics.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Linking CXX shared library libbpp-phyl-omics.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-omics-static.dir/cmake_clean_target.cmake make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl-omics.so.3 -o libbpp-phyl-omics.so.3.0.0 CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o /usr/lib/x86_64-linux-gnu/libbpp-seq-omics.so.3.0.0 /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.0.0 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl-omics.so.3.0.0 libbpp-phyl-omics.so.3 libbpp-phyl-omics.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bpp-phyl-omics-shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-phyl-omics.a CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o /usr/bin/ranlib libbpp-phyl-omics.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bpp-phyl-omics-static make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j8 -Oline install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 all make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/depend make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-phyl-omics-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-omics-static.dir/build'. make[3]: Nothing to be done for 'src/CMakeFiles/bpp-phyl-omics-shared.dir/build'. make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 50%] Built target bpp-phyl-omics-static make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' [100%] Built target bpp-phyl-omics-shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 preinstall make[2]: Nothing to be done for 'preinstall'. make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Install the project... make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-phyl-omics/bpp-phyl-omics-config.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-phyl-omics/bpp-phyl-omics-config-version.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.a -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so -- Installing: /<>/debian/tmp/usr/include/Bpp -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -- Installing: /<>/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-phyl-dev package exists. --> libbpp-seq-dev package exists. --> libbpp-seq-omics-dev package exists. set -e install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbpp-phyl-omics3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.a debian/libbpp-phyl-omics-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so debian/libbpp-phyl-omics-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3 debian/libbpp-phyl-omics3/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbpp-phyl-omics.so.3.0.0 debian/libbpp-phyl-omics3/usr/lib/x86_64-linux-gnu PKGDEV=libbpp-phyl-omics-dev PKGSHL=libbpp-phyl-omics3 install -d -m 755 debian/libbpp-phyl-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-phyl-omics-dev/usr/include install -d -m 755 debian/libbpp-phyl-omics-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/cmake debian/libbpp-phyl-omics-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/<>' echo "Architecture amd64 is the only one where a symbols file is provided" Architecture amd64 is the only one where a symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libbpp-phyl-omics3/DEBIAN/symbols doesn't match completely debian/libbpp-phyl-omics3.symbols --- debian/libbpp-phyl-omics3.symbols (libbpp-phyl-omics3_2.4.0-2_amd64) +++ dpkg-gensymbolsS4kTUo 2018-05-02 13:30:18.373844509 +0000 @@ -32,12 +32,16 @@ _ZN3bpp12TreeTemplateINS_4NodeEE9getLeavesEv@Base 2.4.0 _ZN3bpp12TreeTemplateINS_4NodeEE9getNextIdEv@Base 2.4.0 _ZN3bpp12TreeTemplateINS_4NodeEE9scaleTreeEd@Base 2.4.0 + _ZN3bpp12TreeTemplateINS_4NodeEEC1ERKS2_@Base 2.4.0-2 _ZN3bpp12TreeTemplateINS_4NodeEED0Ev@Base 2.4.0 _ZN3bpp12TreeTemplateINS_4NodeEED1Ev@Base 2.4.0 - _ZN3bpp13TreeExceptionD0Ev@Base 2.4.0 - _ZN3bpp13TreeExceptionD1Ev@Base 2.4.0 - _ZN3bpp13TreeExceptionD2Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp13TreeExceptionD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp13TreeExceptionD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp13TreeExceptionD2Ev@Base 2.4.0 + _ZN3bpp14DistanceMatrix7setNameEmRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0-2 _ZN3bpp14DistanceMatrix8asMatrixEv@Base 2.4.0 + _ZN3bpp14DistanceMatrix8setNamesERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base 2.4.0-2 + _ZN3bpp14DistanceMatrixC1ERKS0_@Base 2.4.0-2 _ZN3bpp14DistanceMatrixD0Ev@Base 2.4.0 _ZN3bpp14DistanceMatrixD1Ev@Base 2.4.0 _ZN3bpp14DistanceMatrixclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.0 @@ -60,47 +64,55 @@ _ZN3bpp17TreeTemplateTools21searchFirstNodeWithIdERNS_4NodeEi@Base 2.4.0 _ZN3bpp17TreeTemplateTools8getNodesIKNS_4NodeEEEvRT_RSt6vectorIPS4_SaIS7_EE@Base 2.4.0 _ZN3bpp17TreeTemplateTools8getNodesINS_4NodeEEEvRT_RSt6vectorIPS3_SaIS6_EE@Base 2.4.0 + _ZN3bpp17TreeTemplateTools9getLeafIdERKNS_4NodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0-2 _ZN3bpp17TreeTemplateTools9getLeavesIKNS_4NodeEEEvRT_RSt6vectorIPS4_SaIS7_EE@Base 2.4.0 _ZN3bpp17TreeTemplateTools9getLeavesINS_4NodeEEEvRT_RSt6vectorIPS3_SaIS6_EE@Base 2.4.0 _ZN3bpp18BppUnsignedIntegerD0Ev@Base 2.4.0 _ZN3bpp18BppUnsignedIntegerD1Ev@Base 2.4.0 - _ZN3bpp18DimensionExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmm@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp18DimensionExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmm@Base 2.4.0 _ZN3bpp18DimensionExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmm@Base 2.4.0 _ZN3bpp18DimensionExceptionD0Ev@Base 2.4.0 - _ZN3bpp18DimensionExceptionD1Ev@Base 2.4.0 - _ZN3bpp18DimensionExceptionD2Ev@Base 2.4.0 - _ZN3bpp18DistanceEstimationD0Ev@Base 2.4.0 - _ZN3bpp18DistanceEstimationD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp18DimensionExceptionD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp18DimensionExceptionD2Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp18DistanceEstimationD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp18DistanceEstimationD1Ev@Base 2.4.0 _ZN3bpp19AbstractMafIterator10setVerboseEb@Base 2.4.0 _ZN3bpp19AbstractMafIterator20addIterationListenerEPNS_17IterationListenerE@Base 2.4.0 _ZN3bpp19AbstractMafIterator9nextBlockEv@Base 2.4.0 + _ZN3bpp19AbstractMafIteratorD0Ev@Base 2.4.0-2 + _ZN3bpp19AbstractMafIteratorD1Ev@Base 2.4.0-2 _ZN3bpp19MafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEd@Base 2.4.0 _ZN3bpp19MafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base 2.4.0 _ZN3bpp19MafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 2.4.0 _ZN3bpp19MafStatisticsResultD0Ev@Base 2.4.0 - _ZN3bpp19MafStatisticsResultD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp19MafStatisticsResultD1Ev@Base 2.4.0 _ZN3bpp19MafStatisticsResultD2Ev@Base 2.4.0 - _ZN3bpp20SubstitutionModelSetD0Ev@Base 2.4.0 - _ZN3bpp20SubstitutionModelSetD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp20SubstitutionModelSetD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp20SubstitutionModelSetD1Ev@Base 2.4.0 + _ZN3bpp21AbstractMafStatisticsD0Ev@Base 2.4.0-2 + _ZN3bpp21AbstractMafStatisticsD1Ev@Base 2.4.0-2 _ZN3bpp21FilterTreeMafIterator16nextRemovedBlockEv@Base 2.4.0 _ZN3bpp21FilterTreeMafIterator20analyseCurrentBlock_Ev@Base 2.4.0 _ZN3bpp21FilterTreeMafIteratorD0Ev@Base 2.4.0 _ZN3bpp21FilterTreeMafIteratorD1Ev@Base 2.4.0 + _ZN3bpp21FilterTreeMafIteratorD2Ev@Base 2.4.0-2 _ZN3bpp21NodeNotFoundExceptionD0Ev@Base 2.4.0 - _ZN3bpp21NodeNotFoundExceptionD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp21NodeNotFoundExceptionD1Ev@Base 2.4.0 _ZN3bpp21NodeNotFoundExceptionD2Ev@Base 2.4.0 - _ZN3bpp21UnrootedTreeExceptionD0Ev@Base 2.4.0 - _ZN3bpp21UnrootedTreeExceptionD1Ev@Base 2.4.0 - _ZN3bpp21UnrootedTreeExceptionD2Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp21UnrootedTreeExceptionD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp21UnrootedTreeExceptionD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp21UnrootedTreeExceptionD2Ev@Base 2.4.0 _ZN3bpp22DropSpeciesMafIterator15manipulateTree_EPNS_12TreeTemplateINS_4NodeEEE@Base 2.4.0 _ZN3bpp22DropSpeciesMafIteratorD0Ev@Base 2.4.0 _ZN3bpp22DropSpeciesMafIteratorD1Ev@Base 2.4.0 _ZN3bpp22NewOutgroupMafIterator15manipulateTree_EPNS_12TreeTemplateINS_4NodeEEE@Base 2.4.0 _ZN3bpp22NewOutgroupMafIteratorD0Ev@Base 2.4.0 _ZN3bpp22NewOutgroupMafIteratorD1Ev@Base 2.4.0 - _ZN3bpp25IndexOutOfBoundsExceptionD0Ev@Base 2.4.0 - _ZN3bpp25IndexOutOfBoundsExceptionD1Ev@Base 2.4.0 - _ZN3bpp25IndexOutOfBoundsExceptionD2Ev@Base 2.4.0 + _ZN3bpp25AbstractFilterMafIteratorD0Ev@Base 2.4.0-2 + _ZN3bpp25AbstractFilterMafIteratorD1Ev@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZN3bpp25IndexOutOfBoundsExceptionD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp25IndexOutOfBoundsExceptionD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp25IndexOutOfBoundsExceptionD2Ev@Base 2.4.0 _ZN3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEd@Base 2.4.0 _ZN3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base 2.4.0 _ZN3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 2.4.0 @@ -112,52 +124,65 @@ _ZN3bpp26CountClustersMafStatistics20getNumberOfClusters_EPKNS_4NodeERSt3mapIS3_dSt4lessIS3_ESaISt4pairIKS3_dEEE@Base 2.4.0 _ZN3bpp26CountClustersMafStatistics7computeERKNS_8MafBlockE@Base 2.4.0 _ZN3bpp26CountClustersMafStatisticsD0Ev@Base 2.4.0 - _ZN3bpp26CountClustersMafStatisticsD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp26CountClustersMafStatisticsD1Ev@Base 2.4.0 _ZN3bpp26CountClustersMafStatisticsD2Ev@Base 2.4.0 + _ZN3bpp27AbstractMafStatisticsSimpleD0Ev@Base 2.4.0-2 + _ZN3bpp27AbstractMafStatisticsSimpleD2Ev@Base 2.4.0-2 _ZN3bpp27TreeManipulationMafIterator20analyseCurrentBlock_Ev@Base 2.4.0 + _ZN3bpp27TreeManipulationMafIteratorD0Ev@Base 2.4.0-2 + _ZN3bpp27TreeManipulationMafIteratorD1Ev@Base 2.4.0-2 + _ZN3bpp27TreeManipulationMafIteratorD2Ev@Base 2.4.0-2 _ZN3bpp34CountDistanceEstimationMafIterator30estimateDistanceMatrixForBlockERKNS_8MafBlockE@Base 2.4.0 _ZN3bpp34CountDistanceEstimationMafIteratorD0Ev@Base 2.4.0 _ZN3bpp34CountDistanceEstimationMafIteratorD1Ev@Base 2.4.0 _ZN3bpp37AbstractDistanceEstimationMafIterator20analyseCurrentBlock_Ev@Base 2.4.0 + _ZN3bpp37AbstractDistanceEstimationMafIteratorD0Ev@Base 2.4.0-2 + _ZN3bpp37AbstractDistanceEstimationMafIteratorD1Ev@Base 2.4.0-2 _ZN3bpp38MaximumLikelihoodModelFitMafStatistics11NO_PROPERTYB5cxx11E@Base 2.4.0 _ZN3bpp38MaximumLikelihoodModelFitMafStatistics5init_Ev@Base 2.4.0 _ZN3bpp38MaximumLikelihoodModelFitMafStatistics7computeERKNS_8MafBlockE@Base 2.4.0 _ZN3bpp38MaximumLikelihoodModelFitMafStatisticsD0Ev@Base 2.4.0 _ZN3bpp38MaximumLikelihoodModelFitMafStatisticsD1Ev@Base 2.4.0 + _ZN3bpp38MaximumLikelihoodModelFitMafStatisticsD2Ev@Base 2.4.0-2 _ZN3bpp42AbstractPhylogenyReconstructionMafIterator20analyseCurrentBlock_Ev@Base 2.4.0 + _ZN3bpp42AbstractPhylogenyReconstructionMafIteratorD0Ev@Base 2.4.0-2 + _ZN3bpp42AbstractPhylogenyReconstructionMafIteratorD1Ev@Base 2.4.0-2 _ZN3bpp46MaximumLikelihoodDistanceEstimationMafIterator30estimateDistanceMatrixForBlockERKNS_8MafBlockE@Base 2.4.0 _ZN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorD0Ev@Base 2.4.0 _ZN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorD1Ev@Base 2.4.0 _ZN3bpp47DistanceBasedPhylogenyReconstructionMafIterator17buildTreeForBlockERKNS_8MafBlockE@Base 2.4.0 _ZN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorD0Ev@Base 2.4.0 _ZN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorD1Ev@Base 2.4.0 - _ZN3bpp4Node10deleteNameEv@Base 2.4.0 - _ZN3bpp4Node10removeSonsEv@Base 2.4.0 - _ZN3bpp4Node12removeFatherEv@Base 2.4.0 - _ZN3bpp4Node19setDistanceToFatherEd@Base 2.4.0 - _ZN3bpp4Node22deleteDistanceToFatherEv@Base 2.4.0 - _ZN3bpp4Node5setIdEi@Base 2.4.0 - _ZN3bpp4Node7setNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 - _ZN3bpp4Node9getFatherEv@Base 2.4.0 - _ZN3bpp4NodeD0Ev@Base 2.4.0 - _ZN3bpp4NodeD1Ev@Base 2.4.0 - _ZN3bpp4NodeD2Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node10deleteNameEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node10removeSonsEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node12removeFatherEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node19setDistanceToFatherEd@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node22deleteDistanceToFatherEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node5setIdEi@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node7setNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4Node9getFatherEv@Base 2.4.0 + _ZN3bpp4NodeC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZN3bpp4NodeD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4NodeD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp4NodeD2Ev@Base 2.4.0 _ZN3bpp6MatrixIdE6equalsERKS1_d@Base 2.4.0 - _ZN3bpp6NumberIdED0Ev@Base 2.4.0 - _ZN3bpp6NumberIdED1Ev@Base 2.4.0 - _ZN3bpp6NumberIiED0Ev@Base 2.4.0 - _ZN3bpp6NumberIiED1Ev@Base 2.4.0 - _ZN3bpp6NumberIjED0Ev@Base 2.4.0 - _ZN3bpp6NumberIjED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp6NumberIdED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp6NumberIdED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp6NumberIiED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp6NumberIiED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp6NumberIjED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp6NumberIjED1Ev@Base 2.4.0 + _ZN3bpp8MafBlock11setPropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS_8ClonableE@Base 2.4.0-2 _ZN3bpp8MafBlock14deletePropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 + _ZN3bpp8MapTools7getKeysINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS_10BppNumberIEEESt6vectorIT_SaISB_EERKSt3mapISB_T0_St4lessISB_ESaISt4pairIKSB_SF_EEE@Base 2.4.0-2 _ZN3bpp9BppDoubleD0Ev@Base 2.4.0 _ZN3bpp9BppDoubleD1Ev@Base 2.4.0 - _ZN3bpp9ExceptionD0Ev@Base 2.4.0 - _ZN3bpp9ExceptionD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp9ExceptionD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp9ExceptionD1Ev@Base 2.4.0 _ZN3bpp9ExceptionD2Ev@Base 2.4.0 _ZN3bpp9RowMatrixIdE6resizeEmm@Base 2.4.0 _ZN3bpp9RowMatrixIdED0Ev@Base 2.4.0 - _ZN3bpp9RowMatrixIdED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZN3bpp9RowMatrixIdED1Ev@Base 2.4.0 _ZN3bpp9RowMatrixIdED2Ev@Base 2.4.0 _ZN3bpp9RowMatrixIdEclEmm@Base 2.4.0 _ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.0 @@ -203,14 +228,15 @@ _ZNK3bpp12TreeTemplateINS_4NodeEE9getRootIdEv@Base 2.4.0 _ZNK3bpp12TreeTemplateINS_4NodeEE9getSonsIdEi@Base 2.4.0 _ZNK3bpp12TreeTemplateINS_4NodeEE9hasFatherEi@Base 2.4.0 - _ZNK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 - _ZNK3bpp13TreeException7getTreeEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp13TreeException7getTreeEv@Base 2.4.0 _ZNK3bpp14DistanceMatrix5cloneEv@Base 2.4.0 + _ZNK3bpp14DistanceMatrix7getNameB5cxx11Em@Base 2.4.0-2 _ZNK3bpp14DistanceMatrix8asMatrixEv@Base 2.4.0 _ZNK3bpp14DistanceMatrixclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.0 _ZNK3bpp14DistanceMatrixclEmm@Base 2.4.0 _ZNK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 - _ZNK3bpp18DistanceEstimation5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp18DistanceEstimation5cloneEv@Base 2.4.0 _ZNK3bpp19AbstractMafIterator9isVerboseEv@Base 2.4.0 _ZNK3bpp19MafStatisticsResult8getValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 _ZNK3bpp19MafStatisticsResult8hasValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 @@ -220,7 +246,7 @@ _ZNK3bpp21OutputTreeMafIterator11writeBlock_ERSoRKNS_8MafBlockE@Base 2.4.0 _ZNK3bpp25SimpleMafStatisticsResult8getValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 _ZNK3bpp25SimpleMafStatisticsResult8getValueEv@Base 2.4.0 - _ZNK3bpp26AbstractParameterAliasable24getIndependentParametersEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp26AbstractParameterAliasable24getIndependentParametersEv@Base 2.4.0 _ZNK3bpp26CountClustersMafStatistics11getFullNameB5cxx11Ev@Base 2.4.0 _ZNK3bpp26CountClustersMafStatistics12getShortNameB5cxx11Ev@Base 2.4.0 _ZNK3bpp27AbstractMafStatisticsSimple16getSupportedTagsB5cxx11Ev@Base 2.4.0 @@ -233,24 +259,25 @@ _ZNK3bpp38MaximumLikelihoodModelFitMafStatistics16getSupportedTagsB5cxx11Ev@Base 2.4.0 _ZNK3bpp46MaximumLikelihoodDistanceEstimationMafIterator15getPropertyNameB5cxx11Ev@Base 2.4.0 _ZNK3bpp47DistanceBasedPhylogenyReconstructionMafIterator15getPropertyNameB5cxx11Ev@Base 2.4.0 - _ZNK3bpp4Node11getFatherIdEv@Base 2.4.0 - _ZNK3bpp4Node15getNumberOfSonsEv@Base 2.4.0 - _ZNK3bpp4Node15hasNodePropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 - _ZNK3bpp4Node17hasBranchPropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 - _ZNK3bpp4Node19hasDistanceToFatherEv@Base 2.4.0 - _ZNK3bpp4Node20getNodePropertyNamesB5cxx11Ev@Base 2.4.0 - _ZNK3bpp4Node22getBranchPropertyNamesB5cxx11Ev@Base 2.4.0 - _ZNK3bpp4Node5getIdEv@Base 2.4.0 - _ZNK3bpp4Node7hasNameEv@Base 2.4.0 - _ZNK3bpp4Node9getFatherEv@Base 2.4.0 - _ZNK3bpp4Node9hasFatherEv@Base 2.4.0 - _ZNK3bpp6NumberIdE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node11getFatherIdEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node15getNumberOfSonsEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node15hasNodePropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node17hasBranchPropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node19hasDistanceToFatherEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node20getNodePropertyNamesB5cxx11Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node22getBranchPropertyNamesB5cxx11Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node5getIdEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node7hasNameEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node9getFatherEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp4Node9hasFatherEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp6NumberIdE5cloneEv@Base 2.4.0 _ZNK3bpp6NumberIdE8toStringB5cxx11Ev@Base 2.4.0 - _ZNK3bpp6NumberIiE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp6NumberIiE5cloneEv@Base 2.4.0 _ZNK3bpp6NumberIiE8toStringB5cxx11Ev@Base 2.4.0 - _ZNK3bpp6NumberIjE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNK3bpp6NumberIjE5cloneEv@Base 2.4.0 _ZNK3bpp6NumberIjE8toStringB5cxx11Ev@Base 2.4.0 _ZNK3bpp8MafBlock11getPropertyERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 + _ZNK3bpp8MafBlock14getSpeciesListB5cxx11Ev@Base 2.4.0-2 _ZNK3bpp9BppDouble5cloneEv@Base 2.4.0 _ZNK3bpp9RowMatrixIdE15getNumberOfRowsEv@Base 2.4.0 _ZNK3bpp9RowMatrixIdE18getNumberOfColumnsEv@Base 2.4.0 @@ -258,47 +285,82 @@ _ZNK3bpp9RowMatrixIdE3rowEm@Base 2.4.0 _ZNK3bpp9RowMatrixIdE5cloneEv@Base 2.4.0 _ZNK3bpp9RowMatrixIdEclEmm@Base 2.4.0 - _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.0 - _ZNKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12_M_check_lenEmPKc@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12_M_check_lenEmPKc@Base 2.4.0 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.0 - _ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 2.4.0 - _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 2.4.0 _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_@Base 2.4.0 - _ZNSt20__uninitialized_copyILb0EE13__uninit_copyISt13move_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEES9_EET0_T_SC_SB_@Base 2.4.0 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIdSaIdEES4_IS6_SaIS6_EEEEPS6_EET0_T_SE_SD_@Base 2.4.0-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_EET0_T_SA_S9_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt20__uninitialized_copyILb0EE13__uninit_copyISt13move_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEES9_EET0_T_SC_SB_@Base 2.4.0 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp10BppNumberIESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.0 _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp8ClonableESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.4.0 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.0 + _ZNSt5dequeIPN3bpp8MafBlockESaIS2_EE17_M_reallocate_mapEmb@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE15_M_range_insertIN9__gnu_cxx17__normal_iteratorIPKS5_S7_EEEEvNSA_IPS5_S7_EET_SG_St20forward_iterator_tag@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.0 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.0 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.0 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.0-2 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE20_M_allocate_and_copyIN9__gnu_cxx17__normal_iteratorIPKS5_S7_EEEEPS5_mT_SF_@Base 2.4.0-2 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.0 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 2.4.0 - _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 2.4.0 _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.0 _ZNSt6vectorIPN3bpp17IterationListenerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.0 - _ZNSt6vectorIPN3bpp4NodeESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt6vectorIPN3bpp4NodeESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.0 _ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.0 _ZNSt6vectorIS_IdSaIdEESaIS1_EE17_M_default_appendEm@Base 2.4.0 - _ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev@Base 2.4.0 - _ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev@Base 2.4.0 - _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 2.4.0 + _ZNSt6vectorIS_IdSaIdEESaIS1_EEC2ERKS3_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev@Base 2.4.0 + _ZNSt6vectorIdSaIdEE17_M_default_appendEm@Base 2.4.0-2 + _ZNSt6vectorIdSaIdEE17_M_realloc_insertIJRKdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 2.4.0 + _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.4.0-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEEvPSt13_Rb_tree_nodeISB_EDpOT_@Base 2.4.0-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.4.0-2 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.4.0 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEEvPSt13_Rb_tree_nodeISB_EDpOT_@Base 2.4.0-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.4.0-2 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.4.0 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.0 - _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.4.0 - _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE24_M_get_insert_unique_posERS5_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.4.0 + _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS5_EESH_IJEEEEESt17_Rb_tree_iteratorIS6_ESt23_Rb_tree_const_iteratorIS6_EDpOT_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE24_M_get_insert_unique_posERS5_@Base 2.4.0 _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS6_ERS5_@Base 2.4.0 _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE8_M_eraseEPSt13_Rb_tree_nodeIS6_E@Base 2.4.0 - _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.0 - _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base 2.4.0 - _ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 2.4.0 - _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 2.4.0 - _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt8_Rb_treeIiSt4pairIKimESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.0 +#MISSING: 2.4.0-2# _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE8_M_eraseEPSt13_Rb_tree_nodeIS5_E@Base 2.4.0 +#MISSING: 2.4.0-2# _ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 2.4.0 +#MISSING: 2.4.0-2# _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base 2.4.0 _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_@Base 2.4.0 + _ZTCN3bpp21FilterTreeMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp21FilterTreeMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp22DropSpeciesMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp22DropSpeciesMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp22DropSpeciesMafIteratorE0_NS_27TreeManipulationMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp22NewOutgroupMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp22NewOutgroupMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp22NewOutgroupMafIteratorE0_NS_27TreeManipulationMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp27TreeManipulationMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp27TreeManipulationMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp34CountDistanceEstimationMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp34CountDistanceEstimationMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp34CountDistanceEstimationMafIteratorE0_NS_37AbstractDistanceEstimationMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp38MaximumLikelihoodModelFitMafStatisticsE0_NS_21AbstractMafStatisticsE@Base 2.4.0-2 + _ZTCN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorE0_NS_37AbstractDistanceEstimationMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorE0_NS_19AbstractMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorE0_NS_25AbstractFilterMafIteratorE@Base 2.4.0-2 + _ZTCN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorE0_NS_42AbstractPhylogenyReconstructionMafIteratorE@Base 2.4.0-2 _ZTIN3bpp10BppIntegerE@Base 2.4.0 _ZTIN3bpp10BppNumberIE@Base 2.4.0 _ZTIN3bpp10SymbolListE@Base 2.4.0 @@ -311,7 +373,7 @@ _ZTIN3bpp16MafTrashIteratorE@Base 2.4.0 _ZTIN3bpp18BppUnsignedIntegerE@Base 2.4.0 _ZTIN3bpp18DimensionExceptionE@Base 2.4.0 - _ZTIN3bpp18DistanceEstimationE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTIN3bpp18DistanceEstimationE@Base 2.4.0 _ZTIN3bpp19MafStatisticsResultE@Base 2.4.0 _ZTIN3bpp21AbstractMafStatisticsE@Base 2.4.0 _ZTIN3bpp21FilterTreeMafIteratorE@Base 2.4.0 @@ -352,7 +414,7 @@ _ZTSN3bpp16MafTrashIteratorE@Base 2.4.0 _ZTSN3bpp18BppUnsignedIntegerE@Base 2.4.0 _ZTSN3bpp18DimensionExceptionE@Base 2.4.0 - _ZTSN3bpp18DistanceEstimationE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTSN3bpp18DistanceEstimationE@Base 2.4.0 _ZTSN3bpp19MafStatisticsResultE@Base 2.4.0 _ZTSN3bpp21AbstractMafStatisticsE@Base 2.4.0 _ZTSN3bpp21FilterTreeMafIteratorE@Base 2.4.0 @@ -381,31 +443,31 @@ _ZTSN3bpp8SequenceE@Base 2.4.0 _ZTSN3bpp9BppDoubleE@Base 2.4.0 _ZTSN3bpp9RowMatrixIdEE@Base 2.4.0 - _ZTTN3bpp10BppIntegerE@Base 2.4.0 - _ZTTN3bpp12TreeTemplateINS_4NodeEEE@Base 2.4.0 - _ZTTN3bpp14DistanceMatrixE@Base 2.4.0 - _ZTTN3bpp18BppUnsignedIntegerE@Base 2.4.0 - _ZTTN3bpp18DistanceEstimationE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp10BppIntegerE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp12TreeTemplateINS_4NodeEEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp14DistanceMatrixE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp18BppUnsignedIntegerE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp18DistanceEstimationE@Base 2.4.0 _ZTTN3bpp21FilterTreeMafIteratorE@Base 2.4.0 _ZTTN3bpp22DropSpeciesMafIteratorE@Base 2.4.0 _ZTTN3bpp22NewOutgroupMafIteratorE@Base 2.4.0 - _ZTTN3bpp25SimpleMafStatisticsResultE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp25SimpleMafStatisticsResultE@Base 2.4.0 _ZTTN3bpp27TreeManipulationMafIteratorE@Base 2.4.0 _ZTTN3bpp34CountDistanceEstimationMafIteratorE@Base 2.4.0 _ZTTN3bpp38MaximumLikelihoodModelFitMafStatisticsE@Base 2.4.0 _ZTTN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorE@Base 2.4.0 _ZTTN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorE@Base 2.4.0 - _ZTTN3bpp6NumberIdEE@Base 2.4.0 - _ZTTN3bpp6NumberIiEE@Base 2.4.0 - _ZTTN3bpp6NumberIjEE@Base 2.4.0 - _ZTTN3bpp9BppDoubleE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp6NumberIdEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp6NumberIiEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp6NumberIjEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTTN3bpp9BppDoubleE@Base 2.4.0 _ZTVN3bpp10BppIntegerE@Base 2.4.0 _ZTVN3bpp12TreeTemplateINS_4NodeEEE@Base 2.4.0 - _ZTVN3bpp13TreeExceptionE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTVN3bpp13TreeExceptionE@Base 2.4.0 _ZTVN3bpp14DistanceMatrixE@Base 2.4.0 _ZTVN3bpp18BppUnsignedIntegerE@Base 2.4.0 _ZTVN3bpp18DimensionExceptionE@Base 2.4.0 - _ZTVN3bpp18DistanceEstimationE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTVN3bpp18DistanceEstimationE@Base 2.4.0 _ZTVN3bpp19MafStatisticsResultE@Base 2.4.0 _ZTVN3bpp21FilterTreeMafIteratorE@Base 2.4.0 _ZTVN3bpp21NodeNotFoundExceptionE@Base 2.4.0 @@ -419,91 +481,91 @@ _ZTVN3bpp38MaximumLikelihoodModelFitMafStatisticsE@Base 2.4.0 _ZTVN3bpp46MaximumLikelihoodDistanceEstimationMafIteratorE@Base 2.4.0 _ZTVN3bpp47DistanceBasedPhylogenyReconstructionMafIteratorE@Base 2.4.0 - _ZTVN3bpp6NumberIdEE@Base 2.4.0 - _ZTVN3bpp6NumberIiEE@Base 2.4.0 - _ZTVN3bpp6NumberIjEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTVN3bpp6NumberIdEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTVN3bpp6NumberIiEE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTVN3bpp6NumberIjEE@Base 2.4.0 _ZTVN3bpp9BppDoubleE@Base 2.4.0 _ZTVN3bpp9RowMatrixIdEE@Base 2.4.0 _ZTch0_v0_n24_NK3bpp27AbstractMafStatisticsSimple9getResultEv@Base 2.4.0 - _ZTch0_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 - _ZTch0_v0_n40_NK3bpp12TreeTemplateINS_4NodeEE5cloneEv@Base 2.4.0 - _ZTch0_v0_n40_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 - _ZTch0_v0_n40_NK3bpp14DistanceMatrix5cloneEv@Base 2.4.0 - _ZTch0_v0_n40_NK3bpp18DistanceEstimation5cloneEv@Base 2.4.0 - _ZTch0_v0_n48_NK3bpp10BppInteger5cloneEv@Base 2.4.0 - _ZTch0_v0_n48_NK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 - _ZTch0_v0_n48_NK3bpp6NumberIdE5cloneEv@Base 2.4.0 - _ZTch0_v0_n48_NK3bpp6NumberIiE5cloneEv@Base 2.4.0 - _ZTch0_v0_n48_NK3bpp6NumberIjE5cloneEv@Base 2.4.0 - _ZTch0_v0_n48_NK3bpp9BppDouble5cloneEv@Base 2.4.0 - _ZTch0_v0_n56_NK3bpp10BppInteger5cloneEv@Base 2.4.0 - _ZTch0_v0_n56_NK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 - _ZTch0_v0_n56_NK3bpp9BppDouble5cloneEv@Base 2.4.0 - _ZTcv0_n32_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n40_NK3bpp12TreeTemplateINS_4NodeEE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n40_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n40_NK3bpp14DistanceMatrix5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n40_NK3bpp18DistanceEstimation5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n48_NK3bpp10BppInteger5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n48_NK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n48_NK3bpp6NumberIdE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n48_NK3bpp6NumberIiE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n48_NK3bpp6NumberIjE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n48_NK3bpp9BppDouble5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n56_NK3bpp10BppInteger5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n56_NK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTch0_v0_n56_NK3bpp9BppDouble5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTcv0_n32_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n40_NK3bpp12TreeTemplateINS_4NodeEE5cloneEv@Base 2.4.0 - _ZTcv0_n32_v0_n40_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTcv0_n32_v0_n40_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n40_NK3bpp14DistanceMatrix5cloneEv@Base 2.4.0 - _ZTcv0_n32_v0_n40_NK3bpp18DistanceEstimation5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTcv0_n32_v0_n40_NK3bpp18DistanceEstimation5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n48_NK3bpp10BppInteger5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n48_NK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 - _ZTcv0_n32_v0_n48_NK3bpp6NumberIdE5cloneEv@Base 2.4.0 - _ZTcv0_n32_v0_n48_NK3bpp6NumberIiE5cloneEv@Base 2.4.0 - _ZTcv0_n32_v0_n48_NK3bpp6NumberIjE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTcv0_n32_v0_n48_NK3bpp6NumberIdE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTcv0_n32_v0_n48_NK3bpp6NumberIiE5cloneEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTcv0_n32_v0_n48_NK3bpp6NumberIjE5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n48_NK3bpp9BppDouble5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n56_NK3bpp10BppInteger5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n56_NK3bpp18BppUnsignedInteger5cloneEv@Base 2.4.0 _ZTcv0_n32_v0_n56_NK3bpp9BppDouble5cloneEv@Base 2.4.0 - _ZTv0_n184_NK3bpp26AbstractParameterAliasable24getIndependentParametersEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n184_NK3bpp26AbstractParameterAliasable24getIndependentParametersEv@Base 2.4.0 _ZTv0_n24_N3bpp10BppIntegerD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp10BppIntegerD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp12TreeTemplateINS_4NodeEED0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp12TreeTemplateINS_4NodeEED1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp14DistanceMatrixD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp14DistanceMatrixD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp12TreeTemplateINS_4NodeEED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp12TreeTemplateINS_4NodeEED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp14DistanceMatrixD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp14DistanceMatrixD1Ev@Base 2.4.0 _ZTv0_n24_N3bpp18BppUnsignedIntegerD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp18BppUnsignedIntegerD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp18DistanceEstimationD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp18DistanceEstimationD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp20SubstitutionModelSetD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp20SubstitutionModelSetD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp18DistanceEstimationD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp18DistanceEstimationD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp20SubstitutionModelSetD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp20SubstitutionModelSetD1Ev@Base 2.4.0 _ZTv0_n24_N3bpp21FilterTreeMafIteratorD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp21FilterTreeMafIteratorD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp22DropSpeciesMafIteratorD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp22DropSpeciesMafIteratorD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp22NewOutgroupMafIteratorD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp22NewOutgroupMafIteratorD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp22DropSpeciesMafIteratorD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp22DropSpeciesMafIteratorD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp22NewOutgroupMafIteratorD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp22NewOutgroupMafIteratorD1Ev@Base 2.4.0 _ZTv0_n24_N3bpp25SimpleMafStatisticsResultD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp25SimpleMafStatisticsResultD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp34CountDistanceEstimationMafIteratorD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp34CountDistanceEstimationMafIteratorD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp38MaximumLikelihoodModelFitMafStatisticsD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp38MaximumLikelihoodModelFitMafStatisticsD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp46MaximumLikelihoodDistanceEstimationMafIteratorD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp46MaximumLikelihoodDistanceEstimationMafIteratorD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp47DistanceBasedPhylogenyReconstructionMafIteratorD0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp47DistanceBasedPhylogenyReconstructionMafIteratorD1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp6NumberIdED0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp6NumberIdED1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp6NumberIiED0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp6NumberIiED1Ev@Base 2.4.0 - _ZTv0_n24_N3bpp6NumberIjED0Ev@Base 2.4.0 - _ZTv0_n24_N3bpp6NumberIjED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp34CountDistanceEstimationMafIteratorD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp34CountDistanceEstimationMafIteratorD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp38MaximumLikelihoodModelFitMafStatisticsD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp38MaximumLikelihoodModelFitMafStatisticsD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp46MaximumLikelihoodDistanceEstimationMafIteratorD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp46MaximumLikelihoodDistanceEstimationMafIteratorD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp47DistanceBasedPhylogenyReconstructionMafIteratorD0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp47DistanceBasedPhylogenyReconstructionMafIteratorD1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp6NumberIdED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp6NumberIdED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp6NumberIiED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp6NumberIiED1Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp6NumberIjED0Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n24_N3bpp6NumberIjED1Ev@Base 2.4.0 _ZTv0_n24_N3bpp9BppDoubleD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp9BppDoubleD1Ev@Base 2.4.0 - _ZTv0_n32_N3bpp19AbstractMafIterator9nextBlockEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n32_N3bpp19AbstractMafIterator9nextBlockEv@Base 2.4.0 _ZTv0_n32_N3bpp21FilterTreeMafIterator16nextRemovedBlockEv@Base 2.4.0 _ZTv0_n32_NK3bpp25SimpleMafStatisticsResult8getValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.0 - _ZTv0_n32_NK3bpp38MaximumLikelihoodModelFitMafStatistics12getShortNameB5cxx11Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n32_NK3bpp38MaximumLikelihoodModelFitMafStatistics12getShortNameB5cxx11Ev@Base 2.4.0 _ZTv0_n40_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEd@Base 2.4.0 - _ZTv0_n40_NK3bpp19AbstractMafIterator9isVerboseEv@Base 2.4.0 - _ZTv0_n40_NK3bpp38MaximumLikelihoodModelFitMafStatistics11getFullNameB5cxx11Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n40_NK3bpp19AbstractMafIterator9isVerboseEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n40_NK3bpp38MaximumLikelihoodModelFitMafStatistics11getFullNameB5cxx11Ev@Base 2.4.0 _ZTv0_n40_NK3bpp6NumberIdE8toStringB5cxx11Ev@Base 2.4.0 _ZTv0_n40_NK3bpp6NumberIiE8toStringB5cxx11Ev@Base 2.4.0 _ZTv0_n40_NK3bpp6NumberIjE8toStringB5cxx11Ev@Base 2.4.0 - _ZTv0_n48_N3bpp19AbstractMafIterator10setVerboseEb@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n48_N3bpp19AbstractMafIterator10setVerboseEb@Base 2.4.0 _ZTv0_n48_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi@Base 2.4.0 - _ZTv0_n48_NK3bpp21AbstractMafStatistics9getResultEv@Base 2.4.0 - _ZTv0_n56_N3bpp19AbstractMafIterator20addIterationListenerEPNS_17IterationListenerE@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n48_NK3bpp21AbstractMafStatistics9getResultEv@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n56_N3bpp19AbstractMafIterator20addIterationListenerEPNS_17IterationListenerE@Base 2.4.0 _ZTv0_n56_N3bpp25SimpleMafStatisticsResult8setValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 2.4.0 _ZTv0_n56_N3bpp38MaximumLikelihoodModelFitMafStatistics7computeERKNS_8MafBlockE@Base 2.4.0 - _ZTv0_n64_NK3bpp38MaximumLikelihoodModelFitMafStatistics16getSupportedTagsB5cxx11Ev@Base 2.4.0 +#MISSING: 2.4.0-2# _ZTv0_n64_NK3bpp38MaximumLikelihoodModelFitMafStatistics16getSupportedTagsB5cxx11Ev@Base 2.4.0 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T13:30:18Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 22940 Build-Time: 13 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 9 Job: libbpp-phyl-omics_2.4.0-2 Machine Architecture: amd64 Package: libbpp-phyl-omics Package-Time: 36 Source-Version: 2.4.0-2 Space: 22940 Status: attempted Version: 2.4.0-2 -------------------------------------------------------------------------------- Finished at 2018-05-02T13:30:18Z Build needed 00:00:36, 22940k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 36.303347241s