DC-Build-Header: libgpiv 0.6.1-7 / 2018-05-02 13:08:51 +0000 DC-Task: type:rebuild-binarch-only source:libgpiv version:0.6.1-7 chroot:unstable esttime:110 logfile:/tmp/libgpiv_0.6.1-7_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 libgpiv_0.6.1-7' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-10-126.eu-central-1.compute.internal +==============================================================================+ | libgpiv 0.6.1-7 (amd64) Wed, 02 May 2018 13:08:51 +0000 | +==============================================================================+ Package: libgpiv Version: 0.6.1-7 Source Version: 0.6.1-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-a75b1cdc-2dda-4a12-b4df-5ee31b722684' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (3390 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (97.7 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/libgpiv-XsQ84f + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libgpiv' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/collab-maint/libgpiv.git Please use: git clone https://anonscm.debian.org/git/collab-maint/libgpiv.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1495 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main libgpiv 0.6.1-7 (dsc) [2353 B] Get:2 http://127.0.0.1:9999/debian unstable/main libgpiv 0.6.1-7 (tar) [1479 kB] Get:3 http://127.0.0.1:9999/debian unstable/main libgpiv 0.6.1-7 (diff) [13.8 kB] Fetched 1495 kB in 0s (9645 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libgpiv-XsQ84f/libgpiv-0.6.1' with '<>' I: NOTICE: Log filtering will replace 'build/libgpiv-XsQ84f' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-vFcu49/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-vFcu49/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vFcu49/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-vFcu49/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vFcu49/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-vFcu49/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-vFcu49/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: autotools-dev, debhelper (>= 10), libfftw3-dev, libglib2.0-dev, libgomp1, libgsl-dev, libhdf5-dev (>= 1.8.8), libpng-dev, mpi-default-dev, netpbm, quilt (>= 0.40), dh-exec, autoconf-archive (>= 20160916-1) Filtered Build-Depends: autotools-dev, debhelper (>= 10), libfftw3-dev, libglib2.0-dev, libgomp1, libgsl-dev, libhdf5-dev (>= 1.8.8), libpng-dev, mpi-default-dev, netpbm, quilt (>= 0.40), dh-exec, autoconf-archive (>= 20160916-1) dpkg-deb: building package 'sbuild-build-depends-libgpiv-dummy' in '/<>/resolver-vFcu49/apt_archive/sbuild-build-depends-libgpiv-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libgpiv-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-vFcu49/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vFcu49/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-vFcu49/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vFcu49/apt_archive ./ Sources [584 B] Get:5 copy:/<>/resolver-vFcu49/apt_archive ./ Packages [668 B] Fetched 2215 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libgpiv build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism diffstat file gettext gettext-base groff-base hdf5-helpers ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl libcroco3 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libncursesw6 libnetpbm10 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpmix2 libpng-dev libpng16-16 libpsm-infinipath1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib librdmacm1 libreadline7 libsigsegv2 libsqlite3-0 libssl1.0.2 libssl1.1 libsz2 libtiff5 libtimedate-perl libtool libxml2 m4 man-db mime-support mpi-default-dev netpbm ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal quilt readline-common zlib1g-dev Suggested packages: gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libfftw3-doc libglib2.0-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libhdf5-doc libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python3-doc python3-tk python3-venv python3.6-venv python3.6-doc binfmt-support procmail graphviz default-mta | mail-transport-agent readline-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools ghostscript xauth libmail-sendmail-perl less The following NEW packages will be installed: autoconf autoconf-archive automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism diffstat file gettext gettext-base groff-base hdf5-helpers ibverbs-providers intltool-debian libaec-dev libaec0 libarchive-zip-perl libcroco3 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmpdec2 libncursesw6 libnetpbm10 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpmix2 libpng-dev libpng16-16 libpsm-infinipath1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib librdmacm1 libreadline7 libsigsegv2 libsqlite3-0 libssl1.0.2 libssl1.1 libsz2 libtiff5 libtimedate-perl libtool libxml2 m4 man-db mime-support mpi-default-dev netpbm ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-minimal quilt readline-common sbuild-build-depends-libgpiv-dummy zlib1g-dev 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. Need to get 61.2 MB of archives. After this operation, 226 MB of additional disk space will be used. Get:1 copy:/<>/resolver-vFcu49/apt_archive ./ sbuild-build-depends-libgpiv-dummy 0.invalid.0 [964 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 autoconf-archive all 20170928-2 [744 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0h-2 [1352 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.6-minimal amd64 3.6.5-5 [572 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 python3.6-minimal amd64 3.6.5-5 [1728 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.6.5-3 [36.2 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libncursesw6 amd64 6.1+20180210-2 [131 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3+b1 [151 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.23.1-1 [603 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.6-stdlib amd64 3.6.5-5 [1730 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 python3.6 amd64 3.6.5-5 [229 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.6.5-3 [19.7 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.6.5-3 [24.1 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2o-1 [1296 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 openssh-client amd64 1:7.7p1-2 [802 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 dh-exec amd64 0.23+b1 [26.7 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 diffstat amd64 1.61-1+b1 [32.8 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 hdf5-helpers amd64 1.10.0-patch1+docs-4+b1 [36.3 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 17.1-2 [45.2 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 ibverbs-providers amd64 17.1-2 [170 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libelf1 amd64 0.170-0.4 [162 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-5 [172 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 librdmacm1 amd64 17.1-2 [65.8 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libfabric1 amd64 1.5.3-1 [303 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-double3 amd64 3.3.7-1+b1 [740 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-long3 amd64 3.3.7-1+b1 [315 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.7-1+b1 [559 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-single3 amd64 3.3.7-1+b1 [770 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-bin amd64 3.3.7-1+b1 [51.0 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-dev amd64 3.3.7-1+b1 [2128 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran4 amd64 7.3.0-17 [487 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-data all 2.56.1-2 [2671 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-bin amd64 2.56.1-2 [1702 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 python3-lib2to3 all 3.6.5-3 [78.7 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 python3-distutils all 3.6.5-3 [144 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.56.1-2 [1735 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libpcre16-3 amd64 2:8.39-9 [257 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libpcre32-3 amd64 2:8.39-9 [248 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libpcrecpp0v5 amd64 2:8.39-9 [152 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libpcre3-dev amd64 2:8.39-9 [647 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-dev amd64 2.56.1-2 [3015 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libgslcblas0 amd64 2.4+dfsg-6 [96.5 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libgsl23 amd64 2.4+dfsg-6 [847 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libgsl-dev amd64 2.4+dfsg-6 [1023 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4+b1 [1284 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-4+b1 [129 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+b1 [208 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libhdf5-dev amd64 1.10.0-patch1+docs-4+b1 [2529 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2.1 [389 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-2.2 [33.8 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.10-1 [110 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-2.2 [46.7 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2.1 [161 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.10-1 [172 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.12-1 [37.1 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.10-1 [16.7 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 17.1-2 [104 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libnetpbm10 amd64 2:10.0-15.3+b2 [86.7 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libpmix2 amd64 2.1.1~rc1-4 [340 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi3 amd64 3.0.1.real-1 [2099 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 3.0.1.real-1 [158 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-bin amd64 3.0.1.real-1 [203 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 3.0.1.real-1 [936 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.34-1 [287 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libpng-dev amd64 1.6.34-1 [294 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.9-5 [246 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 netpbm amd64 2:10.0-15.3+b2 [1029 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 quilt all 0.63-8.2 [308 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.2 MB in 1s (91.5 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2_amd64.deb ... Unpacking bsdmainutils (11.1.2) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package autoconf-archive. Preparing to unpack .../04-autoconf-archive_20170928-2_all.deb ... Unpacking autoconf-archive (20170928-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../05-libssl1.1_1.1.0h-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0h-2) ... 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Setting up libevent-core-2.1-6:amd64 (2.1.8-stable-4) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up mime-support (3.60) ... Setting up libgfortran4:amd64 (7.3.0-17) ... Setting up libpng16-16:amd64 (1.6.34-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libreadline7:amd64 (7.0-3+b1) ... Setting up libnuma1:amd64 (2.0.11-2.2) ... Setting up libelf1:amd64 (0.170-0.4) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libnetpbm10 (2:10.0-15.3+b2) ... Setting up libncursesw6:amd64 (6.1+20180210-2) ... Setting up libtiff5:amd64 (4.0.9-5) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:amd64 (3.3.7-1+b1) ... Setting up libicu57:amd64 (57.1-9) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfftw3-quad3:amd64 (3.3.7-1+b1) ... Setting up libssl1.0.2:amd64 (1.0.2o-1) ... Setting up pkg-config (0.29-4+b1) ... Setting up autoconf-archive (20170928-2) ... Setting up libglib2.0-data (2.56.1-2) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up openmpi-common (3.0.1.real-1) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:amd64 (2.4.6-2.1) ... Setting up libsqlite3-0:amd64 (3.23.1-1) ... Setting up netpbm (2:10.0-15.3+b2) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libfftw3-single3:amd64 (3.3.7-1+b1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-9) ... Setting up libpcre32-3:amd64 (2:8.39-9) ... Setting up libpcre16-3:amd64 (2:8.39-9) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+b1) ... Setting up libnuma-dev:amd64 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-1) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libgslcblas0:amd64 (2.4+dfsg-6) ... Setting up libfftw3-long3:amd64 (3.3.7-1+b1) ... Setting up libglib2.0-bin (2.56.1-2) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4+b1) ... Setting up diffstat (1.61-1+b1) ... Setting up autopoint (0.19.8.1-6) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libpython3.6-stdlib:amd64 (3.6.5-5) ... Setting up libfftw3-bin (3.3.7-1+b1) ... Setting up libpcre3-dev:amd64 (2:8.39-9) ... Setting up python3.6 (3.6.5-5) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4+b1) ... Setting up libltdl-dev:amd64 (2.4.6-2.1) ... Setting up libgsl23:amd64 (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-6) ... Setting up libgsl-dev (2.4+dfsg-6) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:amd64 (1.11.10-1) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libfftw3-dev:amd64 (3.3.7-1+b1) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpng-dev:amd64 (1.6.34-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libpython3-stdlib:amd64 (3.6.5-3) ... Setting up quilt (0.63-8.2) ... Setting up libibverbs1:amd64 (17.1-2) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-4+b1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.5-3) ... Setting up libhwloc-dev:amd64 (1.11.10-1) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpmix2:amd64 (2.1.1~rc1-4) ... Setting up librdmacm1:amd64 (17.1-2) ... Setting up ibverbs-providers:amd64 (17.1-2) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up python3-lib2to3 (3.6.5-3) ... Setting up libibverbs-dev:amd64 (17.1-2) ... Setting up python3-distutils (3.6.5-3) ... Setting up libfabric1 (1.5.3-1) ... Setting up libglib2.0-dev-bin (2.56.1-2) ... Setting up libglib2.0-dev:amd64 (2.56.1-2) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libopenmpi3:amd64 (3.0.1.real-1) ... Setting up openmpi-bin (3.0.1.real-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (3.0.1.real-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1) ... Setting up dh-exec (0.23+b1) ... Setting up sbuild-build-depends-libgpiv-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 autoconf-archive_20170928-2 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-exec_0.23+b1 dh-strip-nondeterminism_0.041-1 diffstat_1.61-1+b1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hdf5-helpers_1.10.0-patch1+docs-4+b1 hostname_3.20 ibverbs-providers_17.1-2 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-16 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libdb5.3_5.3.28-13.1+b1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libelf1_0.170-0.4 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfabric1_1.5.3-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfftw3-bin_3.3.7-1+b1 libfftw3-dev_3.3.7-1+b1 libfftw3-double3_3.3.7-1+b1 libfftw3-long3_3.3.7-1+b1 libfftw3-quad3_3.3.7-1+b1 libfftw3-single3_3.3.7-1+b1 libfile-stripnondeterminism-perl_0.041-1 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-17 libglib2.0-0_2.56.1-2 libglib2.0-bin_2.56.1-2 libglib2.0-data_2.56.1-2 libglib2.0-dev_2.56.1-2 libglib2.0-dev-bin_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libgssapi-krb5-2_1.16-2 libhdf5-100_1.10.0-patch1+docs-4+b1 libhdf5-cpp-100_1.10.0-patch1+docs-4+b1 libhdf5-dev_1.10.0-patch1+docs-4+b1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs-dev_17.1-2 libibverbs1_17.1-2 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libncursesw6_6.1+20180210-2 libnetpbm10_2:10.0-15.3+b2 libnettle6_3.4-1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libopenmpi-dev_3.0.1.real-1 libopenmpi3_3.0.1.real-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpmix2_2.1.1~rc1-4 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libpsm-infinipath1_3.3+20.604758e7-5 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.5-5 libpython3.6-stdlib_3.6.5-5 libquadmath0_8-20180425-1 librdmacm1_17.1-2 libreadline7_7.0-3+b1 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libsz2_1.0.2-1 libtasn1-6_4.13-2 libtiff5_4.0.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libxml2_2.9.4+dfsg1-6.1 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.31.1-0.5 mpi-default-dev_1.13 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 netpbm_2:10.0-15.3+b2 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_3.0.1.real-1 openmpi-common_3.0.1.real-1 openssh-client_1:7.7p1-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pkg-config_0.29-4+b1 po-debconf_1.0.20 python3_3.6.5-3 python3-distutils_3.6.5-3 python3-lib2to3_3.6.5-3 python3-minimal_3.6.5-3 python3.6_3.6.5-5 python3.6-minimal_3.6.5-5 quilt_0.63-8.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libgpiv-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 1 18:25:02 2017 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "vorlon@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgpiv_0.6.1-7.dsc dpkg-source: info: extracting libgpiv in /<> dpkg-source: info: unpacking libgpiv_0.6.1.orig.tar.gz dpkg-source: info: unpacking libgpiv_0.6.1-7.debian.tar.xz dpkg-source: info: applying 03_lipng16.patch dpkg-source: info: applying 01_omp-pragma.diff dpkg-source: info: applying 02_hdf5.diff dpkg-source: info: applying 04-avoid-bool-keyword.diff dpkg-source: info: applying 05-doxygen_fixes.diff dpkg-source: info: applying 06-am-doxygen-fix.diff Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-a75b1cdc-2dda-4a12-b4df-5ee31b722684 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libgpiv dpkg-buildpackage: info: source version 0.6.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve Langasek dpkg-source --before-build libgpiv-0.6.1 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --builddirectory=build-doc debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean override_dh_auto_clean rm -rf /<>/debian/tmp-mpi make[1]: Leaving directory '/<>' dh_clean -O--builddirectory=build-doc dh clean --builddirectory=build-serial debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean override_dh_auto_clean rm -rf /<>/debian/tmp-mpi make[1]: Leaving directory '/<>' dh_clean -O--builddirectory=build-serial dh clean --builddirectory=build-mpi debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean override_dh_auto_clean rm -rf /<>/debian/tmp-mpi make[1]: Leaving directory '/<>' dh_clean -O--builddirectory=build-mpi debian/rules build-arch dh build-arch --builddirectory=build-doc dh_update_autotools_config -a -O--builddirectory=build-doc dh_autoreconf -a -O--builddirectory=build-doc aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.in, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:98: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.in:98: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.in:36: installing './compile' configure.in:98: installing './missing' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' lib/Makefile.am:22: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' dh_auto_configure --builddirectory=build-serial -- --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --sysconfdir=/etc --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --enable-omp cd build-serial && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --sysconfdir=/etc --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --enable-omp configure: WARNING: unrecognized options: --disable-maintainer-mode checking whether build environment is sane... yes checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-linux-gnu-gcc accepts -g... yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes checking for library containing strerror... none required checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking for x86_64-linux-gnu-gcc... (cached) x86_64-linux-gnu-gcc checking whether we are using the GNU C compiler... (cached) yes checking whether x86_64-linux-gnu-gcc accepts -g... (cached) yes checking for x86_64-linux-gnu-gcc option to accept ISO C89... (cached) none needed checking whether x86_64-linux-gnu-gcc understands -c and -o together... (cached) yes checking for x86_64-linux-gnu-g++... x86_64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether x86_64-linux-gnu-g++ accepts -g... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-linux-gnu-gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-linux-gnu-nm -B checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-linux-gnu-ar... x86_64-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for x86_64-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions... yes checking for x86_64-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-gcc static flag -static works... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... x86_64-linux-gnu-g++ -E checking for ld used by x86_64-linux-gnu-g++... /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64 checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld... yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking for x86_64-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if x86_64-linux-gnu-g++ static flag -static works... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... yes checking if x86_64-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ANSI C header files... (cached) yes checking whether ln -s works... yes checking for an ANSI C-conforming const... yes checking for vprintf... yes checking for _doprnt... no checking for gawk... (cached) mawk checking for x86_64-linux-gnu-ranlib... (cached) x86_64-linux-gnu-ranlib checking for size_t... yes checking for gnuplot... false checking for perl... true checking for doxygen... no configure: WARNING: Cannot find doxygen to build documentation. Have a look at http://www.doxygen.org/ checking for x86_64-linux-gnu-doxygen... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for x86_64-linux-gnu-perl... no checking for perl... /usr/bin/perl checking for a BSD-compatible install... /usr/bin/install -c checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of x86_64-linux-gnu-gcc... none checking dependency style of x86_64-linux-gnu-g++... none checking for fftw_plan_dft_r2c_2d in -lfftw3... yes checking for H5Fopen in -lhdf5... yes checking for x86_64-linux-gnu-pkg-config... /usr/bin/x86_64-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking for g_malloc0 in -lglib-2.0... yes checking for main in -lpng... yes checking for pnmtopng... true checking for main in -lgomp... no configure: error: "libgomp not installed" cd build-serial && tail -v -n \+0 config.log ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by libgpiv configure 0.6.1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu --libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --sysconfdir=/etc --mandir=${prefix}/share/man --infodir=${prefix}/share/info --enable-omp ## --------- ## ## Platform. ## ## --------- ## hostname = ip-172-31-10-126 uname -m = x86_64 uname -r = 4.9.0-5-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.65-3+deb9u2 (2018-01-04) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:2557: checking whether build environment is sane configure:2612: result: yes configure:2664: checking for x86_64-linux-gnu-gcc configure:2680: found /usr/bin/x86_64-linux-gnu-gcc configure:2691: result: x86_64-linux-gnu-gcc configure:2960: checking for C compiler version configure:2969: x86_64-linux-gnu-gcc --version >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin configure:2980: $? = 0 configure:2969: x86_64-linux-gnu-gcc -v >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8.0.1 ... rest of stderr output deleted ... configure:2980: $? = 0 configure:2969: x86_64-linux-gnu-gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:2980: $? = 1 configure:2969: x86_64-linux-gnu-gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:2980: $? = 1 configure:3000: checking whether the C compiler works configure:3022: x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 configure:3026: $? = 0 configure:3074: result: yes configure:3077: checking for C compiler default output file name configure:3079: result: a.out configure:3085: checking for suffix of executables configure:3092: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 configure:3096: $? = 0 configure:3118: result: configure:3140: checking whether we are cross compiling configure:3148: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 configure:3152: $? = 0 configure:3159: ./conftest configure:3163: $? = 0 configure:3178: result: no configure:3183: checking for suffix of object files configure:3205: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:3209: $? = 0 configure:3230: result: o configure:3234: checking whether we are using the GNU C compiler configure:3253: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:3253: $? = 0 configure:3262: result: yes configure:3271: checking whether x86_64-linux-gnu-gcc accepts -g configure:3291: x86_64-linux-gnu-gcc -c -g -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:3291: $? = 0 configure:3332: result: yes configure:3349: checking for x86_64-linux-gnu-gcc option to accept ISO C89 configure:3412: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:3412: $? = 0 configure:3425: result: none needed configure:3450: checking whether x86_64-linux-gnu-gcc understands -c and -o together configure:3472: x86_64-linux-gnu-gcc -c conftest.c -o conftest2.o configure:3475: $? = 0 configure:3472: x86_64-linux-gnu-gcc -c conftest.c -o conftest2.o configure:3475: $? = 0 configure:3487: result: yes configure:3505: checking for library containing strerror configure:3536: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 conftest.c:16:6: warning: incompatible redeclaration of library function 'strerror' [-Wincompatible-library-redeclaration] char strerror (); ^ conftest.c:16:6: note: 'strerror' is a builtin with type 'char *(int)' 1 warning generated. configure:3536: $? = 0 configure:3553: result: none required configure:3570: checking for x86_64-linux-gnu-gcc configure:3597: result: x86_64-linux-gnu-gcc configure:3866: checking for C compiler version configure:3875: x86_64-linux-gnu-gcc --version >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin configure:3886: $? = 0 configure:3875: x86_64-linux-gnu-gcc -v >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8.0.1 ... rest of stderr output deleted ... configure:3886: $? = 0 configure:3875: x86_64-linux-gnu-gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3886: $? = 1 configure:3875: x86_64-linux-gnu-gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:3886: $? = 1 configure:3890: checking whether we are using the GNU C compiler configure:3918: result: yes configure:3927: checking whether x86_64-linux-gnu-gcc accepts -g configure:3988: result: yes configure:4005: checking for x86_64-linux-gnu-gcc option to accept ISO C89 configure:4081: result: none needed configure:4106: checking whether x86_64-linux-gnu-gcc understands -c and -o together configure:4143: result: yes configure:4168: checking for x86_64-linux-gnu-gcc configure:4195: result: x86_64-linux-gnu-gcc configure:4464: checking for C compiler version configure:4473: x86_64-linux-gnu-gcc --version >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin configure:4484: $? = 0 configure:4473: x86_64-linux-gnu-gcc -v >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8.0.1 ... rest of stderr output deleted ... configure:4484: $? = 0 configure:4473: x86_64-linux-gnu-gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:4484: $? = 1 configure:4473: x86_64-linux-gnu-gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:4484: $? = 1 configure:4488: checking whether we are using the GNU C compiler configure:4516: result: yes configure:4525: checking whether x86_64-linux-gnu-gcc accepts -g configure:4586: result: yes configure:4603: checking for x86_64-linux-gnu-gcc option to accept ISO C89 configure:4679: result: none needed configure:4704: checking whether x86_64-linux-gnu-gcc understands -c and -o together configure:4741: result: yes configure:4774: checking for x86_64-linux-gnu-g++ configure:4790: found /usr/bin/x86_64-linux-gnu-g++ configure:4801: result: x86_64-linux-gnu-g++ configure:4872: checking for C++ compiler version configure:4881: x86_64-linux-gnu-g++ --version >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin configure:4892: $? = 0 configure:4881: x86_64-linux-gnu-g++ -v >&5 clang version 6.0.0-3 (tags/RELEASE_600/final) Target: x86_64--linux-gnu Thread model: posix InstalledDir: /usr/bin Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/6.4.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/7.3.0 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8 Found candidate GCC installation: /usr/bin/../lib/gcc/x86_64-linux-gnu/8.0.1 ... rest of stderr output deleted ... configure:4892: $? = 0 configure:4881: x86_64-linux-gnu-g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:4892: $? = 1 configure:4881: x86_64-linux-gnu-g++ -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:4892: $? = 1 configure:4896: checking whether we are using the GNU C++ compiler configure:4915: x86_64-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp >&5 configure:4915: $? = 0 configure:4924: result: yes configure:4933: checking whether x86_64-linux-gnu-g++ accepts -g configure:4953: x86_64-linux-gnu-g++ -c -g -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp >&5 configure:4953: $? = 0 configure:4994: result: yes configure:5046: checking build system type configure:5060: result: x86_64-pc-linux-gnu configure:5080: checking host system type configure:5093: result: x86_64-pc-linux-gnu configure:5134: checking how to print strings configure:5161: result: printf configure:5182: checking for a sed that does not truncate output configure:5246: result: /bin/sed configure:5264: checking for grep that handles long lines and -e configure:5322: result: /bin/grep configure:5327: checking for egrep configure:5389: result: /bin/grep -E configure:5394: checking for fgrep configure:5456: result: /bin/grep -F configure:5491: checking for ld used by x86_64-linux-gnu-gcc configure:5558: result: /usr/bin/x86_64-linux-gnu-ld configure:5565: checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld configure:5580: result: yes configure:5592: checking for BSD- or MS-compatible name lister (nm) configure:5646: result: /usr/bin/x86_64-linux-gnu-nm -B configure:5776: checking the name lister (/usr/bin/x86_64-linux-gnu-nm -B) interface configure:5783: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:5786: /usr/bin/x86_64-linux-gnu-nm -B "conftest.o" configure:5789: output 0000000000000000 B some_variable configure:5796: result: BSD nm configure:5799: checking whether ln -s works configure:5803: result: yes configure:5811: checking the maximum length of command line arguments configure:5942: result: 1572864 configure:5990: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:6030: result: func_convert_file_noop configure:6037: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:6057: result: func_convert_file_noop configure:6064: checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files configure:6071: result: -r configure:6105: checking for x86_64-linux-gnu-objdump configure:6121: found /usr/bin/x86_64-linux-gnu-objdump configure:6132: result: x86_64-linux-gnu-objdump configure:6204: checking how to recognize dependent libraries configure:6404: result: pass_all configure:6449: checking for x86_64-linux-gnu-dlltool configure:6479: result: no configure:6489: checking for dlltool configure:6519: result: no configure:6549: checking how to associate runtime and link libraries configure:6576: result: printf %s\n configure:6592: checking for x86_64-linux-gnu-ar configure:6608: found /usr/bin/x86_64-linux-gnu-ar configure:6619: result: x86_64-linux-gnu-ar configure:6700: checking for archiver @FILE support configure:6717: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:6717: $? = 0 configure:6720: x86_64-linux-gnu-ar cru libconftest.a @conftest.lst >&5 x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') configure:6723: $? = 0 configure:6728: x86_64-linux-gnu-ar cru libconftest.a @conftest.lst >&5 x86_64-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') x86_64-linux-gnu-ar: conftest.o: No such file or directory configure:6731: $? = 1 configure:6743: result: @ configure:6761: checking for x86_64-linux-gnu-strip configure:6777: found /usr/bin/x86_64-linux-gnu-strip configure:6788: result: x86_64-linux-gnu-strip configure:6860: checking for x86_64-linux-gnu-ranlib configure:6876: found /usr/bin/x86_64-linux-gnu-ranlib configure:6887: result: x86_64-linux-gnu-ranlib configure:7004: checking for gawk configure:7034: result: no configure:7004: checking for mawk configure:7020: found /usr/bin/mawk configure:7031: result: mawk configure:7071: checking command to parse /usr/bin/x86_64-linux-gnu-nm -B output from x86_64-linux-gnu-gcc object configure:7224: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:7227: $? = 0 configure:7231: /usr/bin/x86_64-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:7234: $? = 0 configure:7300: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c conftstm.o >&5 configure:7303: $? = 0 configure:7341: result: ok configure:7388: checking for sysroot configure:7418: result: no configure:7425: checking for a working dd configure:7463: result: /bin/dd configure:7467: checking how to truncate binary pipes configure:7482: result: /bin/dd bs=4096 count=1 configure:7618: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:7621: $? = 0 configure:7771: checking for x86_64-linux-gnu-mt configure:7801: result: no configure:7811: checking for mt configure:7841: result: no configure:7861: checking if : is a manifest tool configure:7867: : '-?' configure:7875: result: no configure:8552: checking how to run the C preprocessor configure:8583: x86_64-linux-gnu-gcc -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c configure:8583: $? = 0 configure:8597: x86_64-linux-gnu-gcc -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. configure:8597: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | /* end confdefs.h. */ | #include configure:8622: result: x86_64-linux-gnu-gcc -E configure:8642: x86_64-linux-gnu-gcc -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c configure:8642: $? = 0 configure:8656: x86_64-linux-gnu-gcc -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. configure:8656: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | /* end confdefs.h. */ | #include configure:8685: checking for ANSI C header files configure:8705: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8705: $? = 0 configure:8778: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 configure:8778: $? = 0 configure:8778: ./conftest configure:8778: $? = 0 configure:8789: result: yes configure:8802: checking for sys/types.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for sys/stat.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for stdlib.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for string.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for memory.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for strings.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for inttypes.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for stdint.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8802: checking for unistd.h configure:8802: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8802: $? = 0 configure:8802: result: yes configure:8816: checking for dlfcn.h configure:8816: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:8816: $? = 0 configure:8816: result: yes configure:9083: checking for objdir configure:9098: result: .libs configure:9358: checking if x86_64-linux-gnu-gcc supports -fno-rtti -fno-exceptions configure:9376: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -fno-rtti -fno-exceptions conftest.c >&5 configure:9380: $? = 0 configure:9393: result: yes configure:9751: checking for x86_64-linux-gnu-gcc option to produce PIC configure:9758: result: -fPIC -DPIC configure:9766: checking if x86_64-linux-gnu-gcc PIC flag -fPIC -DPIC works configure:9784: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -fPIC -DPIC -DPIC conftest.c >&5 configure:9788: $? = 0 configure:9801: result: yes configure:9830: checking if x86_64-linux-gnu-gcc static flag -static works configure:9858: result: yes configure:9873: checking if x86_64-linux-gnu-gcc supports -c -o file.o configure:9894: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -o out/conftest2.o conftest.c >&5 configure:9898: $? = 0 configure:9920: result: yes configure:9928: checking if x86_64-linux-gnu-gcc supports -c -o file.o configure:9975: result: yes configure:10008: checking whether the x86_64-linux-gnu-gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries configure:11271: result: yes configure:11308: checking whether -lc should be explicitly linked in configure:11316: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:11319: $? = 0 configure:11334: x86_64-linux-gnu-gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:11337: $? = 0 configure:11351: result: no configure:11511: checking dynamic linker characteristics configure:12092: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-rpath -Wl,/foo conftest.c >&5 configure:12092: $? = 0 configure:12341: result: GNU/Linux ld.so configure:12463: checking how to hardcode library paths into programs configure:12488: result: immediate configure:13036: checking whether stripping libraries is possible configure:13041: result: yes configure:13076: checking if libtool supports shared libraries configure:13078: result: yes configure:13081: checking whether to build shared libraries configure:13106: result: yes configure:13109: checking whether to build static libraries configure:13113: result: yes configure:13136: checking how to run the C++ preprocessor configure:13163: x86_64-linux-gnu-g++ -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp configure:13163: $? = 0 configure:13177: x86_64-linux-gnu-g++ -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp conftest.cpp:21:10: fatal error: 'ac_nonexistent.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. configure:13177: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13202: result: x86_64-linux-gnu-g++ -E configure:13222: x86_64-linux-gnu-g++ -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp configure:13222: $? = 0 configure:13236: x86_64-linux-gnu-g++ -E -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp conftest.cpp:21:10: fatal error: 'ac_nonexistent.h' file not found #include ^~~~~~~~~~~~~~~~~~ 1 error generated. configure:13236: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13398: checking for ld used by x86_64-linux-gnu-g++ configure:13465: result: /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64 configure:13472: checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld configure:13487: result: yes configure:13542: checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries configure:14615: result: yes configure:14651: x86_64-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.cpp >&5 configure:14654: $? = 0 configure:15135: checking for x86_64-linux-gnu-g++ option to produce PIC configure:15142: result: -fPIC -DPIC configure:15150: checking if x86_64-linux-gnu-g++ PIC flag -fPIC -DPIC works configure:15168: x86_64-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -fPIC -DPIC -DPIC conftest.cpp >&5 configure:15172: $? = 0 configure:15185: result: yes configure:15208: checking if x86_64-linux-gnu-g++ static flag -static works configure:15236: result: yes configure:15248: checking if x86_64-linux-gnu-g++ supports -c -o file.o configure:15269: x86_64-linux-gnu-g++ -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -o out/conftest2.o conftest.cpp >&5 configure:15273: $? = 0 configure:15295: result: yes configure:15300: checking if x86_64-linux-gnu-g++ supports -c -o file.o configure:15347: result: yes configure:15377: checking whether the x86_64-linux-gnu-g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries configure:15420: result: yes configure:15561: checking dynamic linker characteristics configure:16318: result: GNU/Linux ld.so configure:16383: checking how to hardcode library paths into programs configure:16408: result: immediate configure:16469: checking for ANSI C header files configure:16573: result: yes configure:16582: checking whether ln -s works configure:16586: result: yes configure:16594: checking for an ANSI C-conforming const configure:16660: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:16660: $? = 0 configure:16667: result: yes configure:16677: checking for vprintf configure:16677: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 conftest.c:45:6: warning: incompatible redeclaration of library function 'vprintf' [-Wincompatible-library-redeclaration] char vprintf (); ^ conftest.c:45:6: note: 'vprintf' is a builtin with type 'int (const char *, struct __va_list_tag *)' 1 warning generated. configure:16677: $? = 0 configure:16677: result: yes configure:16683: checking for _doprnt configure:16683: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c >&5 /tmp/conftest-c56949.o: In function `main': ./build-serial/conftest.c:57: undefined reference to `_doprnt' clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:16683: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | /* Define _doprnt to an innocuous variant, in case declares _doprnt. | For example, HP-UX 11i declares gettimeofday. */ | #define _doprnt innocuous__doprnt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _doprnt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _doprnt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _doprnt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__doprnt || defined __stub____doprnt | choke me | #endif | | int | main () | { | return _doprnt (); | ; | return 0; | } configure:16683: result: no configure:16698: checking for gawk configure:16725: result: mawk configure:16739: checking for x86_64-linux-gnu-ranlib configure:16766: result: x86_64-linux-gnu-ranlib configure:16828: checking for size_t configure:16828: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 configure:16828: $? = 0 configure:16828: x86_64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial conftest.c >&5 conftest.c:59:21: error: expected expression if (sizeof ((size_t))) ^ 1 error generated. configure:16828: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:16828: result: yes configure:16843: checking for gnuplot configure:16871: result: false configure:16890: checking for perl configure:16906: found /usr/bin/perl configure:16918: result: true configure:16937: checking for doxygen configure:16970: result: no configure:16977: WARNING: Cannot find doxygen to build documentation. Have a look at http://www.doxygen.org/ configure:17048: checking for x86_64-linux-gnu-doxygen configure:17081: result: no configure:17091: checking for doxygen configure:17124: result: no configure:17144: WARNING: doxygen not found - will not generate any doxygen documentation configure:17154: checking for x86_64-linux-gnu-perl configure:17187: result: no configure:17197: checking for perl configure:17215: found /usr/bin/perl configure:17227: result: /usr/bin/perl configure:18950: checking for a BSD-compatible install configure:19018: result: /usr/bin/install -c configure:19165: checking for a thread-safe mkdir -p configure:19204: result: /bin/mkdir -p configure:19207: checking whether make sets $(MAKE) configure:19229: result: yes configure:19259: checking for style of include used by make configure:19287: result: GNU configure:19321: checking whether make supports nested variables configure:19338: result: yes configure:19415: checking dependency style of x86_64-linux-gnu-gcc configure:19526: result: none configure:19543: checking dependency style of x86_64-linux-gnu-g++ configure:19654: result: none configure:19713: checking for fftw_plan_dft_r2c_2d in -lfftw3 configure:19738: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lfftw3 >&5 configure:19738: $? = 0 configure:19747: result: yes configure:19761: checking for H5Fopen in -lhdf5 configure:19786: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lhdf5 -lfftw3 >&5 configure:19786: $? = 0 configure:19795: result: yes configure:19820: checking for x86_64-linux-gnu-pkg-config configure:19838: found /usr/bin/x86_64-linux-gnu-pkg-config configure:19850: result: /usr/bin/x86_64-linux-gnu-pkg-config configure:19918: checking pkg-config is at least version 0.9.0 configure:19921: result: yes configure:19931: checking for GLIB configure:19938: $PKG_CONFIG --exists --print-errors "glib-2.0 >= 2.0.0" configure:19941: $? = 0 configure:19955: $PKG_CONFIG --exists --print-errors "glib-2.0 >= 2.0.0" configure:19958: $? = 0 configure:20016: result: yes configure:20023: checking for main in -lm configure:20042: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lm -lhdf5 -lfftw3 >&5 configure:20042: $? = 0 configure:20051: result: yes configure:20065: checking for main in -lgslcblas configure:20084: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lgslcblas -lm -lhdf5 -lfftw3 >&5 configure:20084: $? = 0 configure:20093: result: yes configure:20107: checking for main in -lgsl configure:20126: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lgsl -lgslcblas -lm -lhdf5 -lfftw3 >&5 configure:20126: $? = 0 configure:20135: result: yes configure:20149: checking for g_malloc0 in -lglib-2.0 configure:20174: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lglib-2.0 -lgsl -lgslcblas -lm -lhdf5 -lfftw3 >&5 configure:20174: $? = 0 configure:20183: result: yes configure:20197: checking for main in -lpng configure:20216: x86_64-linux-gnu-gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lpng -lglib-2.0 -lgsl -lgslcblas -lm -lhdf5 -lfftw3 >&5 configure:20216: $? = 0 configure:20225: result: yes configure:20241: checking for pnmtopng configure:20257: found /usr/bin/pnmtopng configure:20269: result: true configure:20701: checking for main in -lgomp configure:20720: x86_64-linux-gnu-gcc -fopenmp -o conftest -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -I/usr/include/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial conftest.c -lgomp -lpng -lglib-2.0 -lgsl -lgslcblas -lm -lhdf5 -lfftw3 >&5 /usr/bin/x86_64-linux-gnu-ld: cannot find -lomp clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:20720: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "libgpiv" | #define PACKAGE_TARNAME "libgpiv" | #define PACKAGE_VERSION "0.6.1" | #define PACKAGE_STRING "libgpiv 0.6.1" | #define PACKAGE_BUGREPORT "" | #define PACKAGE_URL "" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define STDC_HEADERS 1 | #define HAVE_VPRINTF 1 | #define HAVE_LIBFFTW3 1 | #define HAVE_LIBHDF5 1 | #define HAVE_LIBM 1 | #define HAVE_LIBGSLCBLAS 1 | #define HAVE_LIBGSL 1 | #define HAVE_LIBGLIB_2_0 1 | #define HAVE_LIBPNG 1 | /* end confdefs.h. */ | | | int | main () | { | return main (); | ; | return 0; | } configure:20729: result: no configure:20739: error: "libgomp not installed" ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-I/usr/include/hdf5/serial -I/usr/include/hdf5/serial' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DOXYGEN_PAPER_SIZE_set= ac_cv_env_DOXYGEN_PAPER_SIZE_value= ac_cv_env_GLIB_CFLAGS_set= ac_cv_env_GLIB_CFLAGS_value= ac_cv_env_GLIB_LIBS_set= ac_cv_env_GLIB_LIBS_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set= ac_cv_env_PKG_CONFIG_PATH_value= ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_build_alias_set=set ac_cv_env_build_alias_value=x86_64-linux-gnu ac_cv_env_host_alias_set=set ac_cv_env_host_alias_value=x86_64-linux-gnu ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func__doprnt=no ac_cv_func_vprintf=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_fftw3_fftw_plan_dft_r2c_2d=yes ac_cv_lib_glib_2_0_g_malloc0=yes ac_cv_lib_gomp_main=no ac_cv_lib_gsl_main=yes ac_cv_lib_gslcblas_main=yes ac_cv_lib_hdf5_H5Fopen=yes ac_cv_lib_m_main=yes ac_cv_lib_png_main=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_PKG_CONFIG=/usr/bin/x86_64-linux-gnu-pkg-config ac_cv_path_SED=/bin/sed ac_cv_path_ac_pt_DX_PERL=/usr/bin/perl ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=x86_64-linux-gnu-ar ac_cv_prog_AWK=mawk ac_cv_prog_CC=x86_64-linux-gnu-gcc ac_cv_prog_CPP='x86_64-linux-gnu-gcc -E' ac_cv_prog_CXX=x86_64-linux-gnu-g++ ac_cv_prog_CXXCPP='x86_64-linux-gnu-g++ -E' ac_cv_prog_GNUPLOT=false ac_cv_prog_OBJDUMP=x86_64-linux-gnu-objdump ac_cv_prog_PERL=true ac_cv_prog_PNMTOPNG=true ac_cv_prog_RANLIB=x86_64-linux-gnu-ranlib ac_cv_prog_STRIP=x86_64-linux-gnu-strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_strerror='none required' ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=none am_cv_CXX_dependencies_compiler_type=none am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes am_cv_prog_cc_stdc= lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/x86_64-linux-gnu-ld lt_cv_path_LDCXX='/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/x86_64-linux-gnu-nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' pkg_cv_GLIB_CFLAGS='-I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include' pkg_cv_GLIB_LIBS=-lglib-2.0 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /<>/missing aclocal-1.15' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='#' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='x86_64-linux-gnu-ar' AUTOCONF='${SHELL} /<>/missing autoconf' AUTOHEADER='${SHELL} /<>/missing autoheader' AUTOMAKE='${SHELL} /<>/missing automake-1.15' AWK='mawk' BUILD_MPI_FALSE='' BUILD_MPI_TRUE='#' CC='x86_64-linux-gnu-gcc -fopenmp' CCDEPMODE='depmode=none' CFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CPP='x86_64-linux-gnu-gcc -E' CPPFLAGS='-I/usr/include/hdf5/serial -I/usr/include/hdf5/serial' CXX='x86_64-linux-gnu-g++' CXXCPP='x86_64-linux-gnu-g++ -E' CXXDEPMODE='depmode=none' CXXFLAGS='-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL='false' DOT_PATH='' DOXYGEN='' DOXYGEN_PAPER_SIZE='' DSYMUTIL='' DUMPBIN='' DX_CONFIG='../Doxyfile' DX_DOCDIR='doxygen-doc' DX_DOT='' DX_DOXYGEN='' DX_DVIPS='' DX_EGREP='' DX_ENV=' SRCDIR='\''..'\'' PROJECT='\''libgpiv'\'' VERSION='\''0.6.1'\'' HAVE_DOT='\''NO'\'' GENERATE_MAN='\''NO'\'' GENERATE_RTF='\''NO'\'' GENERATE_XML='\''NO'\'' GENERATE_HTMLHELP='\''NO'\'' GENERATE_CHI='\''NO'\'' GENERATE_HTML='\''NO'\'' GENERATE_LATEX='\''NO'\''' DX_FLAG_chi='0' DX_FLAG_chm='0' DX_FLAG_doc='0' DX_FLAG_dot='0' DX_FLAG_html='0' DX_FLAG_man='0' DX_FLAG_pdf='0' DX_FLAG_ps='0' DX_FLAG_rtf='0' DX_FLAG_xml='0' DX_HHC='' DX_LATEX='' DX_MAKEINDEX='' DX_PDFLATEX='' DX_PERL='/usr/bin/perl' DX_PROJECT='libgpiv' DX_RULES='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_CAM='' ENABLE_MPI='' ENABLE_TRIG='' EXEEXT='' FGREP='/bin/grep -F' GENERATE_CHI='NO' GENERATE_HTML='NO' GENERATE_HTMLHELP='NO' GENERATE_LATEX='NO' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GLIB_CFLAGS='-I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include' GLIB_LIBS='-lglib-2.0' GNUPLOT='false' GPIV_MAJOR_VERSION='0' GPIV_MICRO_VERSION='1' GPIV_MINOR_VERSION='6' GPIV_VERSION='0.6.1' GREP='/bin/grep' HAVE_DOT='NO' HAVE_GNUPLOT_FALSE='' HAVE_GNUPLOT_TRUE='#' HAVE_PERL_FALSE='#' HAVE_PERL_TRUE='' HHC_PATH='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64' LDFLAGS='-Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial' LIBOBJS='' LIBS='-lpng -lglib-2.0 -lgsl -lgslcblas -lm -lhdf5 -lfftw3 ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_AGE='0' LT_CURRENT='3' LT_RELEASE='0.6' LT_REVISION='0' LT_SYS_LIBRARY_PATH='' MAKEINFO='${SHELL} /<>/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' MPICC='' MPILIBS='' NM='/usr/bin/x86_64-linux-gnu-nm -B' NMEDIT='' OBJDUMP='x86_64-linux-gnu-objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='libgpiv' PACKAGE_BUGREPORT='' PACKAGE_NAME='libgpiv' PACKAGE_STRING='libgpiv 0.6.1' PACKAGE_TARNAME='libgpiv' PACKAGE_URL='' PACKAGE_VERSION='0.6.1' PAPER_SIZE='' PATH_SEPARATOR=':' PERL='true' PERL_PATH='' PKG_CONFIG='/usr/bin/x86_64-linux-gnu-pkg-config' PKG_CONFIG_LIBDIR='' PKG_CONFIG_PATH='' PNMTOPNG='true' PROJECT='libgpiv' RANLIB='x86_64-linux-gnu-ranlib' RTA_TOPDIR='/usr/lib/realtime' SED='/bin/sed' SET_MAKE='' SHELL='/bin/bash' SRCDIR='..' STRIP='x86_64-linux-gnu-strip' VERSION='0.6.1' ac_ct_AR='' ac_ct_CC='' ac_ct_CXX='' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='#' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc=' -I$(srcdir)' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='x86_64-linux-gnu' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<>/install-sh' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${prefix}/lib/x86_64-linux-gnu' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='${localstatedir}/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "libgpiv" #define PACKAGE_TARNAME "libgpiv" #define PACKAGE_VERSION "0.6.1" #define PACKAGE_STRING "libgpiv 0.6.1" #define PACKAGE_BUGREPORT "" #define PACKAGE_URL "" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define STDC_HEADERS 1 #define HAVE_VPRINTF 1 #define HAVE_LIBFFTW3 1 #define HAVE_LIBHDF5 1 #define HAVE_LIBM 1 #define HAVE_LIBGSLCBLAS 1 #define HAVE_LIBGSL 1 #define HAVE_LIBGLIB_2_0 1 #define HAVE_LIBPNG 1 configure: exit 1 dh_auto_configure: cd build-serial && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --host=x86_64-linux-gnu --build=x86_64-linux-gnu --prefix=/usr --sysconfdir=/etc --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --enable-omp returned exit code 1 make[1]: *** [debian/rules:39: override_dh_auto_configure-arch] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:30: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T13:09:32Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 6448 Build-Time: 13 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 13 Job: libgpiv_0.6.1-7 Machine Architecture: amd64 Package: libgpiv Package-Time: 41 Source-Version: 0.6.1-7 Space: 6448 Status: attempted Version: 0.6.1-7 -------------------------------------------------------------------------------- Finished at 2018-05-02T13:09:32Z Build needed 00:00:41, 6448k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 41.843304837s DC-Time-Estimation: 41.843304837 versus expected 110 (r/m: 1.6288554507944206 ; m: 41.843304837)