DC-Build-Header: librostlab-blast 1.0.1-8 / 2018-05-02 13:05:39 +0000 DC-Task: type:rebuild-binarch-only source:librostlab-blast version:1.0.1-8 chroot:unstable esttime:126 logfile:/tmp/librostlab-blast_1.0.1-8_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 librostlab-blast_1.0.1-8' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-14-85.eu-central-1.compute.internal +==============================================================================+ | librostlab-blast 1.0.1-8 (amd64) Wed, 02 May 2018 13:05:39 +0000 | +==============================================================================+ Package: librostlab-blast Version: 1.0.1-8 Source Version: 1.0.1-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-c95fda53-1186-4ab5-aef8-39b41bc3a416' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (3421 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (96.0 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... 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Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/librostlab-blast-Pa0dam + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'librostlab-blast' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/librostlab-blast.git Please use: git clone https://anonscm.debian.org/git/debian-med/librostlab-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 392 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main librostlab-blast 1.0.1-8 (dsc) [2420 B] Get:2 http://127.0.0.1:9999/debian unstable/main librostlab-blast 1.0.1-8 (tar) [384 kB] Get:3 http://127.0.0.1:9999/debian unstable/main librostlab-blast 1.0.1-8 (diff) [5332 B] Fetched 392 kB in 0s (2883 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/librostlab-blast-Pa0dam/librostlab-blast-1.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-Pa0dam' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-e6nKM6/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-e6nKM6/apt_archive ./ InRelease Get:2 copy:/<>/resolver-e6nKM6/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-e6nKM6/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-e6nKM6/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-e6nKM6/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-e6nKM6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package 'sbuild-build-depends-librostlab-blast-dummy' in '/<>/resolver-e6nKM6/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-librostlab-blast-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-e6nKM6/apt_archive ./ InRelease Get:2 copy:/<>/resolver-e6nKM6/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-e6nKM6/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-e6nKM6/apt_archive ./ Sources [572 B] Get:5 copy:/<>/resolver-e6nKM6/apt_archive ./ Packages [655 B] Fetched 2190 B in 0s (0 B/s) Reading package lists... Reading package lists... Install librostlab-blast build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt5 libcgraph6 libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libltdl7 libmagic-mgc libmagic1 libncursesw6 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libssl1.1 libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 lsb-base m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal readline-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation dh-make dwz doxygen-latex doxygen-doc doxygen-gui flex-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff cups-common libgd-tools krb5-doc krb5-user liblcms2-utils librostlab-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support readline-doc gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-fonts-recommended-doc texlive-latex-base-doc python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex Recommended packages: libfl-dev curl | wget | lynx fonts-liberation libcupsfilters1 dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libgts-bin krb5-locales libgpm2 libltdl-dev libmail-sendmail-perl lmodern tex-gyre tipa texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libcairo2 libcdt5 libcgraph6 libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libltdl7 libmagic-mgc libmagic1 libncursesw6 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libssl1.1 libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 lsb-base m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal readline-common sbuild-build-depends-librostlab-blast-dummy t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 129 MB of archives. After this operation, 438 MB of additional disk space will be used. Get:1 copy:/<>/resolver-e6nKM6/apt_archive ./ sbuild-build-depends-librostlab-blast-dummy 0.invalid.0 [944 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.15-1 [393 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.15-1 [1353 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.15~rc1-1 [41.1 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libncursesw6 amd64 6.1+20180210-2 [131 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3+b1 [151 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.23.1-1 [603 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0h-2 [1352 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.15-1 [1912 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.15-1 [298 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.15~rc1-1 [20.5 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.15~rc1-1 [155 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 flex amd64 2.6.4-6.1 [454 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0038 [67.8 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 tex-common all 6.09 [53.2 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libbison-dev amd64 2:3.0.4.dfsg-1+b1 [433 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 bison amd64 2:3.0.4.dfsg-1+b1 [786 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 d-shlibs all 0.82 [18.8 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libxapian30 amd64 1.4.5-1 [1056 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.34-1 [287 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8.1-2 [461 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.13.0-4 [280 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.13.0-4 [343 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig amd64 2.13.0-4 [405 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 fonts-lmodern all 2.004.5-3 [4540 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.34.0-2 [529 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.13-1 [136 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.5-1 [292 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.5-1 [749 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.13-1 [108 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.13-1 [98.3 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.15.10-3 [664 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libcdt5 amd64 2.40.1-3 [60.6 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libcgraph6 amd64 2.40.1-3 [84.2 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.9-5 [246 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libgd3 amd64 2.2.5-4 [136 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2.1 [389 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libfribidi0 amd64 0.19.7-2 [45.5 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libthai-data all 0.1.27-2 [168 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libdatrie1 amd64 0.2.11-1 [37.9 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libthai0 amd64 0.1.27-2 [53.3 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libpango-1.0-0 amd64 1.42.1-1 [175 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.11-2 [85.2 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.7.6-1 [842 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.42.1-1 [59.6 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.42.1-1 [48.0 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libpathplan4 amd64 2.40.1-3 [63.8 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libxdot4 amd64 2.40.1-3 [56.8 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libgvc6 amd64 2.40.1-3 [648 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libgvpr2 amd64 2.40.1-3 [212 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 lsb-base all 9.20170808 [28.1 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 liblab-gamut1 amd64 2.40.1-3 [220 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 graphviz amd64 2.40.1-3 [634 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common-data amd64 0.7-4 [122 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common3 amd64 0.7-4 [54.4 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libdbus-1-3 amd64 1.12.8-1 [209 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-client3 amd64 0.7-4 [57.8 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libcups2 amd64 2.2.7-3 [320 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libcupsimage2 amd64 2.2.7-3 [130 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libijs-0.35 amd64 0.35-13 [18.5 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libjbig2dec0 amd64 0.13-6 [60.3 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 liblcms2-2 amd64 2.9-1 [145 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libopenjp2-7 amd64 2.3.0-1 [163 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libgs9-common all 9.22~dfsg-2.1 [5241 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libgs9 amd64 9.22~dfsg-2.1 [2155 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz-icu0 amd64 1.7.6-1 [584 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libkpathsea6 amd64 2018.20180416.47457-2 [165 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libpotrace0 amd64 1.14-2 [25.7 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libptexenc1 amd64 2018.20180416.47457-2 [58.7 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 librostlab3 amd64 1.0.20-7 [6008 B] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 librostlab3-dev amd64 1.0.20-7 [13.9 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libsynctex2 amd64 2018.20180416.47457-2 [78.5 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua52 amd64 2018.20180416.47457-2 [112 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua53 amd64 2018.20180416.47457-2 [125 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libtexluajit2 amd64 2018.20180416.47457-2 [255 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [55.4 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 preview-latex-style all 11.91-1 [201 kB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 t1utils amd64 1.41-2 [62.0 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 texlive-binaries amd64 2018.20180416.47457-2 [11.6 MB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 xdg-utils all 1.1.2-2 [72.8 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 texlive-base all 2018.20180416-1 [18.9 MB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 texlive-fonts-recommended all 2018.20180416-1 [5294 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-base all 2018.20180416-1 [985 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-recommended all 2018.20180416-1 [15.3 MB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 texlive-pictures all 2018.20180416-1 [4091 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-extra all 2018.20180416-1 [11.0 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 129 MB in 1s (95.2 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2_amd64.deb ... Unpacking bsdmainutils (11.1.2) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.15-1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.15-1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.15-1_amd64.deb ... Unpacking python2.7-minimal (2.7.15-1) ... 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Setting up libexpat1:amd64 (2.2.5-3) ... Setting up liblab-gamut1 (2.40.1-3) ... Setting up libopenjp2-7:amd64 (2.3.0-1) ... Setting up libxdot4 (2.40.1-3) ... Setting up libptexenc1:amd64 (2018.20180416.47457-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up mime-support (3.60) ... Setting up libpng16-16:amd64 (1.6.34-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:amd64 (2.9-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up poppler-data (0.4.9-2) ... Setting up libreadline7:amd64 (7.0-3+b1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libncursesw6:amd64 (6.1+20180210-2) ... Setting up libtexlua53:amd64 (2018.20180416.47457-2) ... Setting up doxygen (1.8.13-10) ... Setting up d-shlibs (0.82) ... Setting up libdatrie1:amd64 (0.2.11-1) ... Setting up libtiff5:amd64 (4.0.9-5) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libsynctex2:amd64 (2018.20180416.47457-2) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up librostlab3 (1.0.20-7) ... Setting up libicu57:amd64 (57.1-9) ... Setting up ucf (3.0038) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up libfreetype6:amd64 (2.8.1-2) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up lsb-base (9.20170808) ... Setting up libgraphite2-3:amd64 (1.3.11-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libjbig2dec0:amd64 (0.13-6) ... Setting up libpixman-1-0:amd64 (0.34.0-2) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up t1utils (1.41-2) ... Setting up libssl1.1:amd64 (1.1.0h-2) ... Setting up libltdl7:amd64 (2.4.6-2.1) ... Setting up libijs-0.35:amd64 (0.35-13) ... Setting up libsqlite3-0:amd64 (3.23.1-1) ... Setting up libbison-dev:amd64 (2:3.0.4.dfsg-1+b1) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libfribidi0:amd64 (0.19.7-2) ... Setting up libpotrace0 (1.14-2) ... Setting up libthai-data (0.1.27-2) ... Setting up bison (2:3.0.4.dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.2-2) ... Setting up libtexluajit2:amd64 (2018.20180416.47457-2) ... Setting up libcdt5 (2.40.1-3) ... Setting up librostlab3-dev (1.0.20-7) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-6) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libdbus-1-3:amd64 (1.12.8-1) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libavahi-common-data:amd64 (0.7-4) ... Setting up libcgraph6 (2.40.1-3) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.13.0-4) ... Setting up tex-common (6.09) ... update-language: texlive-base not installed and configured, doing nothing! Setting up gettext (0.19.8.1-6) ... Setting up flex (2.6.4-6.1) ... Setting up libgvpr2 (2.40.1-3) ... Setting up python2.7 (2.7.15-1) ... Setting up libharfbuzz0b:amd64 (1.7.6-1) ... Setting up preview-latex-style (11.91-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.27-2) ... Setting up file (1:5.33-2) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up libpython-stdlib:amd64 (2.7.15~rc1-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:amd64 (0.7-4) ... Setting up libxcb1:amd64 (1.13-1) ... Setting up python (2.7.15~rc1-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libfontconfig1:amd64 (2.13.0-4) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libxcb-render0:amd64 (1.13-1) ... Setting up libharfbuzz-icu0:amd64 (1.7.6-1) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:amd64 (2:1.6.5-1) ... Setting up libxcb-shm0:amd64 (1.13-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.7-4) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up fontconfig (2.13.0-4) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgd3:amd64 (2.2.5-4) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up libpango-1.0-0:amd64 (1.42.1-1) ... Setting up libcups2:amd64 (2.2.7-3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.15.10-3) ... Setting up libpangoft2-1.0-0:amd64 (1.42.1-1) ... Setting up libcupsimage2:amd64 (2.2.7-3) ... Setting up libgs9:amd64 (9.22~dfsg-2.1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.1-1) ... Setting up texlive-binaries (2018.20180416.47457-2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2018.20180416-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up texlive-fonts-recommended (2018.20180416-1) ... Setting up texlive-latex-base (2018.20180416-1) ... Setting up texlive-latex-recommended (2018.20180416-1) ... Setting up libgvc6 (2.40.1-3) ... Setting up texlive-pictures (2018.20180416-1) ... Setting up graphviz (2.40.1-3) ... Setting up texlive-latex-extra (2018.20180416-1) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1) ... Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... Processing triggers for tex-common (6.09) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bison_2:3.0.4.dfsg-1+b1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 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libbinutils_2.30-16 libbison-dev_2:3.0.4.dfsg-1+b1 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcdt5_2.40.1-3 libcgraph6_2.40.1-3 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcups2_2.2.7-3 libcupsimage2_2.2.7-3 libdatrie1_0.2.11-1 libdb5.3_5.3.28-13.1+b1 libdbus-1-3_1.12.8-1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libfontconfig1_2.13.0-4 libfreetype6_2.8.1-2 libfribidi0_0.19.7-2 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgd3_2.2.5-4 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 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libncursesw5_6.1+20180210-2 libncursesw6_6.1+20180210-2 libnettle6_3.4-1 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libopenjp2-7_2.3.0-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpango-1.0-0_1.42.1-1 libpangocairo-1.0-0_1.42.1-1 libpangoft2-1.0-0_1.42.1-1 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpathplan4_2.40.1-3 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpng16-16_1.6.34-1 libpotrace0_1.14-2 libptexenc1_2018.20180416.47457-2 libpython-stdlib_2.7.15~rc1-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libquadmath0_8-20180425-1 libreadline7_7.0-3+b1 librostlab3_1.0.20-7 librostlab3-dev_1.0.20-7 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsynctex2_2018.20180416.47457-2 libsystemd0_238-4 libtasn1-6_4.13-2 libtexlua52_2018.20180416.47457-2 libtexlua53_2018.20180416.47457-2 libtexluajit2_2018.20180416.47457-2 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-5 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libwebp6_0.6.1-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxapian30_1.4.5-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxdot4_2.40.1-3 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-6.1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd1_1.3.4+dfsg-1 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.15.17-1 login_1:4.5-1 lsb-base_9.20170808 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 po-debconf_1.0.20 poppler-data_0.4.9-2 preview-latex-style_11.91-1 python_2.7.15~rc1-1 python-minimal_2.7.15~rc1-1 python2.7_2.7.15-1 python2.7-minimal_2.7.15-1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 t1utils_1.41-2 tar_1.30+dfsg-1 tex-common_6.09 texlive-base_2018.20180416-1 texlive-binaries_2018.20180416.47457-2 texlive-fonts-recommended_2018.20180416-1 texlive-latex-base_2018.20180416-1 texlive-latex-extra_2018.20180416-1 texlive-latex-recommended_2018.20180416-1 texlive-pictures_2018.20180416-1 ucf_3.0038 util-linux_2.31.1-0.5 x11-common_1:7.7+19 xdg-utils_1.1.2-2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jun 20 19:24:41 2017 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-8.dsc dpkg-source: info: extracting librostlab-blast in /<> dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-8.debian.tar.xz dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-c95fda53-1186-4ab5-aef8-39b41bc3a416 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package librostlab-blast dpkg-buildpackage: info: source version 1.0.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build librostlab-blast-1.0.1 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j8 -Oline make all-recursive Making all in lib make[4]: Entering directory '/<>/lib' mkdir -p rostlab make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>/lib' /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /<>/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ /<>/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>/lib' sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>/lib' sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>/lib' sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>/lib' /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex make[4]: Leaving directory '/<>/lib' make all-am make[5]: Entering directory '/<>/lib' \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe make[5]: Leaving directory '/<>/lib' make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o In file included from blast-parser-parser.ypp:54: ./rostlab/blast-parser-driver.h:61:12: warning: use of enumeration in a nested name specifier is a C++11 extension [-Wc++11-extensions] friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ ./rostlab/blast-parser-driver.h:61:12: error: no function named 'yylex' with type 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::parser::location_type *, rostlab::blast::parser_driver &, void *)' (aka 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::location *, rostlab::blast::parser_driver &, void *)') was found in the specified scope ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-parser.cpp:46: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 1 warning and 6 errors generated. make[5]: *** [Makefile:557: librostlab_blast_la-blast-parser-parser.lo] Error 1 make[5]: Leaving directory '/<>/lib' make[5]: *** Waiting for unfinished jobs.... make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from blast-parser-driver.cpp:19: ./rostlab/blast-parser-driver.h:61:12: warning: use of enumeration in a nested name specifier is a C++11 extension [-Wc++11-extensions] friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ ./rostlab/blast-parser-driver.h:61:12: error: no function named 'yylex' with type 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::parser::location_type *, rostlab::blast::parser_driver &, void *)' (aka 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::location *, rostlab::blast::parser_driver &, void *)') was found in the specified scope ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 1 warning and 6 errors generated. make[5]: *** [Makefile:550: librostlab_blast_la-blast-parser-driver.lo] Error 1 make[5]: Leaving directory '/<>/lib' make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o In file included from blast-parser-scanner.lpp:22: ./rostlab/blast-parser-driver.h:61:12: warning: use of enumeration in a nested name specifier is a C++11 extension [-Wc++11-extensions] friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ ./rostlab/blast-parser-driver.h:61:12: error: no function named 'yylex' with type 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::parser::location_type *, rostlab::blast::parser_driver &, void *)' (aka 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::location *, rostlab::blast::parser_driver &, void *)') was found in the specified scope ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ blast-parser-scanner.lpp:103:7: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer = yytext; BEGIN(s_reference); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:104:7: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer += '\n'; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:104:30: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer += '\n'; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:105:72: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __yylloc->lines(yyleng); __yylloc->step(); BEGIN(INITIAL); RETS( __drv._buffer, token::REFERENCE ); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:106:7: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' __drv._buffer.clear(); BEGIN(s_query); return token::QUERYEQ; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:107:12: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += string(yytext); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:107:36: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += string(yytext); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:107:58: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += string(yytext); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:108:41: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' yyless(0); BEGIN(s_query2); RETS( __drv._buffer, token::STRING ); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:138:18: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' yyless(1); __drv._buffer.clear(); BEGIN(s_hit); return token_type(yytext[0]); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:139:12: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:139:36: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:139:58: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' if( !__drv._buffer.empty() ) __drv._buffer += ' '; __drv._buffer += yytext; ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:140:27: error: '_buffer' is a private member of 'rostlab::blast::parser_driver' BEGIN(s_hsp); RETS( __drv._buffer, token::STRING ); ^ ./rostlab/blast-parser-driver.h:74:19: note: declared private here std::string _buffer; ^ blast-parser-scanner.lpp:159:9: error: '_n1' is a private member of 'rostlab::blast::parser_driver' __drv._n1 = yyleng; ^ ./rostlab/blast-parser-driver.h:75:19: note: declared private here int _n1, _n2; ^ blast-parser-scanner.lpp:166:7: error: '_n2' is a private member of 'rostlab::blast::parser_driver' __drv._n2 = yyleng; BEGIN(s_ali4); RETS( yytext, token::STRING ); ^ ./rostlab/blast-parser-driver.h:75:24: note: declared private here int _n1, _n2; ^ blast-parser-scanner.lpp:170:42: error: '_n1' is a private member of 'rostlab::blast::parser_driver' BEGIN(s_ali6); RETS( buf.substr( __drv._n1, __drv._n2 ), token::STRING ); ^ ./rostlab/blast-parser-driver.h:75:19: note: declared private here int _n1, _n2; ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 1 warning and 20 errors generated. make[5]: *** [Makefile:564: librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo] Error 1 make[5]: Leaving directory '/<>/lib' make[4]: *** [Makefile:440: all] Error 2 make[3]: *** [Makefile:482: all-recursive] Error 1 make[2]: *** [Makefile:393: all] Error 2 dh_auto_build: make -j8 -Oline returned exit code 2 make[1]: *** [debian/rules:25: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:11: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T13:06:35Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 8992 Build-Time: 14 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 27 Job: librostlab-blast_1.0.1-8 Machine Architecture: amd64 Package: librostlab-blast Package-Time: 56 Source-Version: 1.0.1-8 Space: 8992 Status: attempted Version: 1.0.1-8 -------------------------------------------------------------------------------- Finished at 2018-05-02T13:06:35Z Build needed 00:00:56, 8992k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 56.883131556s DC-Time-Estimation: 56.883131556 versus expected 126 (r/m: 1.2150679217784661 ; m: 56.883131556)