DC-Build-Header: parsnp 1.2+dfsg-3 / 2018-05-02 13:26:55 +0000 DC-Task: type:rebuild-binarch-only source:parsnp version:1.2+dfsg-3 chroot:unstable esttime:43 logfile:/tmp/parsnp_1.2+dfsg-3_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 parsnp_1.2+dfsg-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-1-38.eu-central-1.compute.internal +==============================================================================+ | parsnp 1.2+dfsg-3 (amd64) Wed, 02 May 2018 13:26:56 +0000 | +==============================================================================+ Package: parsnp Version: 1.2+dfsg-3 Source Version: 1.2+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-64da7927-0d8d-476d-b08e-4373521c3601' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (3423 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (98.6 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/parsnp-0shsl6 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'parsnp' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debian-med/parsnp.git Please use: git clone https://anonscm.debian.org/git/debian-med/parsnp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 103 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main parsnp 1.2+dfsg-3 (dsc) [2011 B] Get:2 http://127.0.0.1:9999/debian unstable/main parsnp 1.2+dfsg-3 (tar) [93.0 kB] Get:3 http://127.0.0.1:9999/debian unstable/main parsnp 1.2+dfsg-3 (diff) [8080 B] Fetched 103 kB in 0s (767 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/parsnp-0shsl6/parsnp-1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/parsnp-0shsl6' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-GFhXlj/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-GFhXlj/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GFhXlj/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-GFhXlj/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GFhXlj/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-GFhXlj/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-GFhXlj/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, python-all-dev, python-setuptools, cython, libmuscle-3.7-dev dpkg-deb: building package 'sbuild-build-depends-parsnp-dummy' in '/<>/resolver-GFhXlj/apt_archive/sbuild-build-depends-parsnp-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-parsnp-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-GFhXlj/apt_archive ./ InRelease Get:2 copy:/<>/resolver-GFhXlj/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-GFhXlj/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-GFhXlj/apt_archive ./ Sources [535 B] Get:5 copy:/<>/resolver-GFhXlj/apt_archive ./ Packages [610 B] Fetched 2108 B in 0s (0 B/s) Reading package lists... Reading package lists... Install parsnp build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libncursesw6 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal readline-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-setuptools-doc python2.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libmuscle-3.7-1 libmuscle-3.7-dev libncursesw6 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal readline-common sbuild-build-depends-parsnp-dummy 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 59.1 MB of archives. After this operation, 149 MB of additional disk space will be used. Get:1 copy:/<>/resolver-GFhXlj/apt_archive ./ sbuild-build-depends-parsnp-dummy 0.invalid.0 [896 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.15-1 [393 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.15-1 [1353 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.15~rc1-1 [41.1 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libncursesw6 amd64 6.1+20180210-2 [131 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3+b1 [151 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.23.1-1 [603 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0h-2 [1352 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.15-1 [1912 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.15-1 [298 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.15~rc1-1 [20.5 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.15~rc1-1 [155 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 cython amd64 0.26.1-0.4 [1904 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.5-3 [140 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libmuscle-3.7-1 amd64 3.7+4565-2 [252 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libmuscle-3.7-dev amd64 3.7+4565-2 [308 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.15-1 [1052 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.15-1 [28.3 MB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.15~rc1-1 [20.6 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libpython-all-dev amd64 2.7.15~rc1-1 [1048 B] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 python-all amd64 2.7.15~rc1-1 [1028 B] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.15-1 [290 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.15~rc1-1 [1212 B] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 python-all-dev amd64 2.7.15~rc1-1 [1052 B] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 python-pkg-resources all 39.0.1-2 [171 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 python-setuptools all 39.0.1-2 [373 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.1 MB in 1s (92.1 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2_amd64.deb ... Unpacking bsdmainutils (11.1.2) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.15-1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.15-1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.15-1_amd64.deb ... Unpacking python2.7-minimal (2.7.15-1) ... 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Selecting previously unselected package python. (Reading database ... 12213 files and directories currently installed.) Preparing to unpack .../00-python_2.7.15~rc1-1_amd64.deb ... Unpacking python (2.7.15~rc1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.33-2_amd64.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.33-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.33-2) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.33-2_amd64.deb ... Unpacking file (1:5.33-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.19.8.1-6_amd64.deb ... Unpacking gettext-base (0.19.8.1-6) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../05-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... 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Setting up libreadline7:amd64 (7.0-3+b1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libncursesw6:amd64 (6.1+20180210-2) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-9) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up libssl1.1:amd64 (1.1.0h-2) ... Setting up libmuscle-3.7-1 (3.7+4565-2) ... Setting up libsqlite3-0:amd64 (3.23.1-1) ... Setting up libexpat1-dev:amd64 (2.2.5-3) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:amd64 (2.7.15-1) ... Setting up autopoint (0.19.8.1-6) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libmuscle-3.7-dev (3.7+4565-2) ... Setting up gettext (0.19.8.1-6) ... Setting up python2.7 (2.7.15-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libpython-stdlib:amd64 (2.7.15~rc1-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:amd64 (2.7.15-1) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:amd64 (2.7.15-1) ... Setting up python2.7-dev (2.7.15-1) ... Setting up python (2.7.15~rc1-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libpython-dev:amd64 (2.7.15~rc1-1) ... Setting up po-debconf (1.0.20) ... Setting up python-dev (2.7.15~rc1-1) ... Setting up libpython-all-dev:amd64 (2.7.15~rc1-1) ... Setting up python-pkg-resources (39.0.1-2) ... Setting up cython (0.26.1-0.4) ... Setting up python-all (2.7.15~rc1-1) ... Setting up python-setuptools (39.0.1-2) ... Setting up python-all-dev (2.7.15~rc1-1) ... Setting up dh-autoreconf (17) ... Setting up debhelper (11.2.1) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up sbuild-build-depends-parsnp-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 cython_0.26.1-0.4 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hostname_3.20 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-16 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libdb5.3_5.3.28-13.1+b1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libhogweed4_3.4-1 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjsoncpp1_1.7.4-3 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libmuscle-3.7-1_3.7+4565-2 libmuscle-3.7-dev_3.7+4565-2 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libncursesw6_6.1+20180210-2 libnettle6_3.4-1 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpython-all-dev_2.7.15~rc1-1 libpython-dev_2.7.15~rc1-1 libpython-stdlib_2.7.15~rc1-1 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libquadmath0_8-20180425-1 libreadline7_7.0-3+b1 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0h-2 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libxml2_2.9.4+dfsg1-6.1 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 po-debconf_1.0.20 python_2.7.15~rc1-1 python-all_2.7.15~rc1-1 python-all-dev_2.7.15~rc1-1 python-dev_2.7.15~rc1-1 python-minimal_2.7.15~rc1-1 python-pkg-resources_39.0.1-2 python-setuptools_39.0.1-2 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-parsnp-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Nov 23 19:12:10 2016 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./parsnp_1.2+dfsg-3.dsc dpkg-source: info: extracting parsnp in /<>/parsnp-1.2+dfsg dpkg-source: info: unpacking parsnp_1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking parsnp_1.2+dfsg-3.debian.tar.xz dpkg-source: info: applying fix_libmuscle_path.patch dpkg-source: info: applying fix_setup.py dpkg-source: info: applying fix_install_path.patch dpkg-source: info: applying avoid_rpath.patch dpkg-source: info: applying add_missing_interpreter_line.patch dpkg-source: info: applying proper_calls_to_tools.patch dpkg-source: info: applying drop_m64.patch dpkg-source: info: applying fix_build_with_as-needed.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-64da7927-0d8d-476d-b08e-4373521c3601 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package parsnp dpkg-buildpackage: info: source version 1.2+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build parsnp-1.2+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --with autoreconf dh_auto_clean python setup.py clean -a running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ dh_clean debian/rules build-arch dh build-arch --with python2 --with autoreconf dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:2: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:3: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory, src/Makefile.am:4: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/parsnp-1.2+dfsg' dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7 configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking libMUSCLE/muscle.h usability... yes checking libMUSCLE/muscle.h presence... yes checking for libMUSCLE/muscle.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>/parsnp-1.2+dfsg' dh_auto_build -a make -j8 -Oline Making all in src make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] parsnp.cpp:52:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:404: parsnp-parsnp.o] Error 1 make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: *** Waiting for unfinished jobs.... make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] In file included from MuscleInterface.cpp:3: ./MuscleInterface.h:11:10: fatal error: 'omp.h' file not found #include ^~~~~~~ 1 error generated. make[2]: *** [Makefile:390: parsnp-MuscleInterface.o] Error 1 make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] TMum.cpp:61:34: warning: use of logical '||' with constant operand [-Wconstant-logical-operand] if(this->isforward.at(i) || 1) ^ ~ TMum.cpp:61:34: note: use '|' for a bitwise operation if(this->isforward.at(i) || 1) ^~ | 1 warning generated. make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[2]: Entering directory '/<>/parsnp-1.2+dfsg/src' g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.0\" -DPACKAGE_STRING=\"parsnp\ 1.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -I. -I/usr/include/libMUSCLE-3.7 -O3 -fopenmp -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -g -O2 -fdebug-prefix-map=/<>/parsnp-1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o parsnp-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp clang: warning: optimization flag '-funroll-all-loops' is not supported [-Wignored-optimization-argument] make[2]: Leaving directory '/<>/parsnp-1.2+dfsg/src' make[1]: *** [Makefile:340: all-recursive] Error 1 dh_auto_build: make -j8 -Oline returned exit code 2 make: *** [debian/rules:10: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T13:27:27Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 4788 Build-Time: 6 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 11 Job: parsnp_1.2+dfsg-3 Machine Architecture: amd64 Package: parsnp Package-Time: 31 Source-Version: 1.2+dfsg-3 Space: 4788 Status: attempted Version: 1.2+dfsg-3 -------------------------------------------------------------------------------- Finished at 2018-05-02T13:27:27Z Build needed 00:00:31, 4788k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 32.677773978s