DC-Build-Header: rdkit 201709.3+dfsg-1 / 2018-05-02 12:14:02 +0000 DC-Task: type:rebuild-binarch-only source:rdkit version:201709.3+dfsg-1 chroot:unstable esttime:1328 logfile:/tmp/rdkit_201709.3+dfsg-1_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 rdkit_201709.3+dfsg-1' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-6-194.eu-central-1.compute.internal +==============================================================================+ | rdkit 201709.3+dfsg-1 (amd64) Wed, 02 May 2018 12:14:02 +0000 | +==============================================================================+ Package: rdkit Version: 201709.3+dfsg-1 Source Version: 201709.3+dfsg-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-ec0a2326-e05c-4a6f-8303-ecb418dc1804' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (2884 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (96.1 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/rdkit-ct1wR5 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'rdkit' packaging is maintained in the 'Git' version control system at: https://anonscm.debian.org/git/debichem/packages/rdkit.git Please use: git clone https://anonscm.debian.org/git/debichem/packages/rdkit.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 24.5 MB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main rdkit 201709.3+dfsg-1 (dsc) [2579 B] Get:2 http://127.0.0.1:9999/debian unstable/main rdkit 201709.3+dfsg-1 (tar) [24.5 MB] Get:3 http://127.0.0.1:9999/debian unstable/main rdkit 201709.3+dfsg-1 (diff) [8044 B] Fetched 24.5 MB in 4s (6581 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/rdkit-ct1wR5/rdkit-201709.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/rdkit-ct1wR5' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-NwbbLA/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-NwbbLA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NwbbLA/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-NwbbLA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NwbbLA/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-NwbbLA/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-NwbbLA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, latexmk, pandoc, python-dev, python-epydoc, python-pil, python-numpy, python-pandas, python3-sphinx, python3-recommonmark, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended Filtered Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, latexmk, pandoc, python-dev, python-epydoc, python-pil, python-numpy, python-pandas, python3-sphinx, python3-recommonmark, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended dpkg-deb: building package 'sbuild-build-depends-rdkit-dummy' in '/<>/resolver-NwbbLA/apt_archive/sbuild-build-depends-rdkit-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-rdkit-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-NwbbLA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NwbbLA/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NwbbLA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NwbbLA/apt_archive ./ Sources [642 B] Get:5 copy:/<>/resolver-NwbbLA/apt_archive ./ Packages [726 B] Fetched 2331 B in 0s (0 B/s) Reading package lists... Reading package lists... Install rdkit build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils ca-certificates cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common doxygen file flex fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base icu-devtools intltool-debian latexmk libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas3 libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost1.62-dev libcairo2 libcroco3 libcups2 libcupsimage2 libcurl3 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran4 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libncursesw6 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libprocps6 libpsl5 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libreadline7 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libsqlite3-dev libssh2-1 libssl1.0.2 libssl1.1 libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtimedate-perl libtool libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-0-2 libzzip-0-13 lsb-base m4 man-db mime-support openssl pandoc pandoc-data po-debconf poppler-data preview-latex-style procps python python-babel-localedata python-dateutil python-dev python-epydoc python-minimal python-numpy python-pandas python-pandas-lib python-pil python-pkg-resources python-six python-tz python2.7 python2.7-dev python2.7-minimal python3 python3-alabaster python3-babel python3-certifi python3-chardet python3-commonmark-bkrs python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pkg-resources python3-pygments python3-pyparsing python3-recommonmark python3-requests python3-roman python3-six python3-sphinx python3-tz python3-urllib3 python3.6 python3.6-dev python3.6-minimal readline-common sgml-base sphinx-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-generic-extra texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic tzdata ucf x11-common xdg-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz doxygen-latex doxygen-doc doxygen-gui graphviz flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff ghostscript lrzip libboost-doc libboost1.62-doc gccxml libboost-context1.62-dev libboost-coroutine1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-random1.62-dev libboost-signals1.62-dev libboost-test1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev cups-common krb5-doc krb5-user icu-doc liblcms2-utils sqlite3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser texlive-xetex texlive-luatex pandoc-citeproc context wkhtmltopdf librsvg2-bin ghc nodejs php ruby r-base-core libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk epydoc-doc gfortran python-nose python-numpy-dbg python-numpy-doc python-pandas-doc python-pil-doc python-pil-dbg python-setuptools python2.7-doc binfmt-support python3-doc python3-tk python3-venv python-commonmark-bkrs-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french python-jinja2-doc python3-setuptools ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python3-sphinx-rtd-theme libjs-mathjax dvipng imagemagick-6.q16 sphinx-doc python3.6-venv python3.6-doc readline-doc sgml-base-doc gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-fonts-recommended-doc texlive-latex-base-doc python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex Recommended packages: libfl-dev curl | wget | lynx xpdf-reader | pdf-viewer gv | postscript-viewer libcupsfilters1 dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc python-tk python-docutils graphviz python-scipy python-matplotlib python-tables python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt python-bs4 python-html5lib python-lxml python-olefile python3-pil lmodern tex-gyre tipa ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils ca-certificates cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common doxygen file flex fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base groff-base icu-devtools intltool-debian latexmk libarchive-zip-perl libarchive13 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas3 libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev libboost-python-dev libboost-python1.62-dev libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0 libboost-serialization1.62-dev libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0 libboost1.62-dev libcairo2 libcroco3 libcups2 libcupsimage2 libcurl3 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran4 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common liblua5.1-0 liblzo2-2 libmagic-mgc libmagic1 libmpdec2 libncursesw6 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libprocps6 libpsl5 libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libreadline7 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsqlite3-0 libsqlite3-dev libssh2-1 libssl1.0.2 libssl1.1 libsynctex2 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtimedate-perl libtool libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-0-2 libzzip-0-13 lsb-base m4 man-db mime-support openssl pandoc pandoc-data po-debconf poppler-data preview-latex-style procps python python-babel-localedata python-dateutil python-dev python-epydoc python-minimal python-numpy python-pandas python-pandas-lib python-pil python-pkg-resources python-six python-tz python2.7 python2.7-dev python2.7-minimal python3 python3-alabaster python3-babel python3-certifi python3-chardet python3-commonmark-bkrs python3-dev python3-distutils python3-docutils python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-packaging python3-pkg-resources python3-pygments python3-pyparsing python3-recommonmark python3-requests python3-roman python3-six python3-sphinx python3-tz python3-urllib3 python3.6 python3.6-dev python3.6-minimal readline-common sbuild-build-depends-rdkit-dummy sgml-base sphinx-common t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-generic-extra texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic tzdata ucf x11-common xdg-utils xml-core 0 upgraded, 240 newly installed, 0 to remove and 0 not upgraded. Need to get 295 MB of archives. After this operation, 1097 MB of additional disk space will be used. Get:1 copy:/<>/resolver-NwbbLA/apt_archive ./ sbuild-build-depends-rdkit-dummy 0.invalid.0 [1012 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-minimal amd64 2.7.15-1 [393 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-minimal amd64 2.7.15-1 [1353 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 python-minimal amd64 2.7.15~rc1-1 [41.1 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libncursesw6 amd64 6.1+20180210-2 [131 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 readline-common all 7.0-3 [70.4 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libreadline7 amd64 7.0-3+b1 [151 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-0 amd64 3.23.1-1 [603 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.1 amd64 1.1.0h-2 [1352 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-stdlib amd64 2.7.15-1 [1912 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 python2.7 amd64 2.7.15-1 [298 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libpython-stdlib amd64 2.7.15~rc1-1 [20.5 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 python amd64 2.7.15~rc1-1 [155 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 flex amd64 2.6.4-6.1 [454 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.6-minimal amd64 3.6.5-5 [572 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 python3.6-minimal amd64 3.6.5-5 [1728 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 python3-minimal amd64 3.6.5-3 [36.2 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.6-stdlib amd64 3.6.5-5 [1730 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 python3.6 amd64 3.6.5-5 [229 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-stdlib amd64 3.6.5-3 [19.7 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 python3 amd64 3.6.5-3 [24.1 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 sgml-base all 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http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libbison-dev amd64 2:3.0.4.dfsg-1+b1 [433 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 bison amd64 2:3.0.4.dfsg-1+b1 [786 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 openssl amd64 1.1.0h-2 [744 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 ca-certificates all 20180409 [161 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 cmake-data all 3.11.1-1 [1386 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 liblzo2-2 amd64 2.08-1.2+b2 [55.0 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libarchive13 amd64 3.2.2-3.1 [296 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3.1 [68.6 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3.1 [105 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libldap-common all 2.4.45+dfsg-1 [87.0 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.45+dfsg-1 [223 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libnghttp2-14 amd64 1.31.1-1 [80.7 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libpsl5 amd64 0.20.1-1 [52.6 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1+b1 [60.4 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libssh2-1 amd64 1.8.0-1 [138 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2o-1 [1296 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libcurl3 amd64 7.58.0-2 [312 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 librhash0 amd64 1.3.6-2 [87.1 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 libuv1 amd64 1.18.0-3 [98.5 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 cmake amd64 3.11.1-1 [3190 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 dh-python all 3.20180326 [93.2 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 xml-core all 0.18 [23.4 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 docutils-common all 0.14+dfsg-3 [204 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libxapian30 amd64 1.4.5-1 [1056 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.13.0-4 [280 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 fonts-lmodern all 2.004.5-3 [4540 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 icu-devtools amd64 57.1-9 [177 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libpaper1 amd64 1.1.24+nmu5 [21.6 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libpaper-utils amd64 1.1.24+nmu5 [17.6 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libkpathsea6 amd64 2018.20180416.47457-2 [165 kB] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libptexenc1 amd64 2018.20180416.47457-2 [58.7 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libsynctex2 amd64 2018.20180416.47457-2 [78.5 kB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua52 amd64 2018.20180416.47457-2 [112 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libtexlua53 amd64 2018.20180416.47457-2 [125 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libtexluajit2 amd64 2018.20180416.47457-2 [255 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 t1utils amd64 1.41-2 [62.0 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.34-1 [287 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8.1-2 [461 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.13.0-4 [343 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.34.0-2 [529 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.13-1 [136 kB] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.5-1 [292 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.5-1 [749 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.13-1 [108 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.13-1 [98.3 kB] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.15.10-3 [664 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libgraphite2-3 amd64 1.3.11-2 [85.2 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common-data amd64 0.7-4 [122 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-common3 amd64 0.7-4 [54.4 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libdbus-1-3 amd64 1.12.8-1 [209 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libavahi-client3 amd64 0.7-4 [57.8 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libcups2 amd64 2.2.7-3 [320 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libcupsimage2 amd64 2.2.7-3 [130 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libijs-0.35 amd64 0.35-13 [18.5 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libjbig2dec0 amd64 0.13-6 [60.3 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 liblcms2-2 amd64 2.9-1 [145 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 libopenjp2-7 amd64 2.3.0-1 [163 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libtiff5 amd64 4.0.9-5 [246 kB] Get:133 http://127.0.0.1:9999/debian unstable/main amd64 libgs9-common all 9.22~dfsg-2.1 [5241 kB] Get:134 http://127.0.0.1:9999/debian unstable/main amd64 libgs9 amd64 9.22~dfsg-2.1 [2155 kB] Get:135 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz0b amd64 1.7.6-1 [842 kB] Get:136 http://127.0.0.1:9999/debian unstable/main amd64 libharfbuzz-icu0 amd64 1.7.6-1 [584 kB] Get:137 http://127.0.0.1:9999/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:138 http://127.0.0.1:9999/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:139 http://127.0.0.1:9999/debian unstable/main amd64 libpotrace0 amd64 1.14-2 [25.7 kB] Get:140 http://127.0.0.1:9999/debian unstable/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:141 http://127.0.0.1:9999/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:142 http://127.0.0.1:9999/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:143 http://127.0.0.1:9999/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:144 http://127.0.0.1:9999/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:145 http://127.0.0.1:9999/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:146 http://127.0.0.1:9999/debian unstable/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [55.4 kB] Get:147 http://127.0.0.1:9999/debian unstable/main amd64 texlive-binaries amd64 2018.20180416.47457-2 [11.6 MB] Get:148 http://127.0.0.1:9999/debian unstable/main amd64 xdg-utils all 1.1.2-2 [72.8 kB] Get:149 http://127.0.0.1:9999/debian unstable/main amd64 texlive-base all 2018.20180416-1 [18.9 MB] Get:150 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-base all 2018.20180416-1 [985 kB] Get:151 http://127.0.0.1:9999/debian unstable/main amd64 latexmk all 1:4.41-1 [376 kB] Get:152 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran4 amd64 7.3.0-17 [487 kB] Get:153 http://127.0.0.1:9999/debian unstable/main amd64 libblas3 amd64 3.8.0-1 [150 kB] Get:154 http://127.0.0.1:9999/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-5+b1 [7004 kB] Get:155 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62.0 amd64 1.62.0+dfsg-5+b1 [30.9 kB] Get:156 http://127.0.0.1:9999/debian unstable/main amd64 libboost-atomic1.62-dev amd64 1.62.0+dfsg-5+b1 [29.8 kB] Get:157 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62.0 amd64 1.62.0+dfsg-5+b1 [32.9 kB] Get:158 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62.0 amd64 1.62.0+dfsg-5+b1 [36.5 kB] Get:159 http://127.0.0.1:9999/debian unstable/main amd64 libboost-chrono1.62-dev amd64 1.62.0+dfsg-5+b1 [36.9 kB] Get:160 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62.0 amd64 1.62.0+dfsg-5+b1 [43.4 kB] Get:161 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62.0 amd64 1.62.0+dfsg-5+b1 [126 kB] Get:162 http://127.0.0.1:9999/debian unstable/main amd64 libboost-serialization1.62-dev amd64 1.62.0+dfsg-5+b1 [164 kB] Get:163 http://127.0.0.1:9999/debian unstable/main amd64 libboost-date-time1.62-dev amd64 1.62.0+dfsg-5+b1 [50.6 kB] Get:164 http://127.0.0.1:9999/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:165 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.62.0 amd64 1.62.0+dfsg-5+b1 [138 kB] Get:166 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7 amd64 2.7.15-1 [1052 kB] Get:167 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1-dev amd64 2.2.5-3 [140 kB] Get:168 http://127.0.0.1:9999/debian unstable/main amd64 libpython2.7-dev amd64 2.7.15-1 [28.3 MB] Get:169 http://127.0.0.1:9999/debian unstable/main amd64 libpython-dev amd64 2.7.15~rc1-1 [20.6 kB] Get:170 http://127.0.0.1:9999/debian unstable/main amd64 python2.7-dev amd64 2.7.15-1 [290 kB] Get:171 http://127.0.0.1:9999/debian unstable/main amd64 python-dev amd64 2.7.15~rc1-1 [1212 B] Get:172 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.6 amd64 3.6.5-5 [1441 kB] Get:173 http://127.0.0.1:9999/debian unstable/main amd64 libpython3.6-dev amd64 3.6.5-5 [39.7 MB] Get:174 http://127.0.0.1:9999/debian unstable/main amd64 libpython3-dev amd64 3.6.5-3 [19.7 kB] Get:175 http://127.0.0.1:9999/debian unstable/main amd64 python3.6-dev amd64 3.6.5-5 [511 kB] Get:176 http://127.0.0.1:9999/debian unstable/main amd64 python3-lib2to3 all 3.6.5-3 [78.7 kB] Get:177 http://127.0.0.1:9999/debian unstable/main amd64 python3-distutils all 3.6.5-3 [144 kB] Get:178 http://127.0.0.1:9999/debian unstable/main amd64 python3-dev amd64 3.6.5-3 [1244 B] Get:179 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python1.62-dev amd64 1.62.0+dfsg-5+b1 [167 kB] Get:180 http://127.0.0.1:9999/debian unstable/main amd64 libboost-python-dev amd64 1.62.0.1 [3802 B] Get:181 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62.0 amd64 1.62.0+dfsg-5+b1 [289 kB] Get:182 http://127.0.0.1:9999/debian unstable/main amd64 libicu-dev amd64 57.1-9 [16.6 MB] Get:183 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex1.62-dev amd64 1.62.0+dfsg-5+b1 [337 kB] Get:184 http://127.0.0.1:9999/debian unstable/main amd64 libboost-regex-dev amd64 1.62.0.1 [3674 B] Get:185 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system1.62-dev amd64 1.62.0+dfsg-5+b1 [34.3 kB] Get:186 http://127.0.0.1:9999/debian unstable/main amd64 libboost-system-dev amd64 1.62.0.1 [3554 B] Get:187 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62.0 amd64 1.62.0+dfsg-5+b1 [72.2 kB] Get:188 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread1.62-dev amd64 1.62.0+dfsg-5+b1 [72.2 kB] Get:189 http://127.0.0.1:9999/debian unstable/main amd64 libboost-thread-dev amd64 1.62.0.1 [3442 B] Get:190 http://127.0.0.1:9999/debian unstable/main amd64 libjs-jquery all 3.2.1-1 [154 kB] Get:191 http://127.0.0.1:9999/debian unstable/main amd64 libjs-underscore all 1.8.3~dfsg-1 [63.8 kB] Get:192 http://127.0.0.1:9999/debian unstable/main amd64 libjs-sphinxdoc all 1.7.4-1 [89.7 kB] Get:193 http://127.0.0.1:9999/debian unstable/main amd64 liblapack3 amd64 3.8.0-1 [2146 kB] Get:194 http://127.0.0.1:9999/debian unstable/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get:195 http://127.0.0.1:9999/debian unstable/main amd64 libsqlite3-dev amd64 3.23.1-1 [740 kB] Get:196 http://127.0.0.1:9999/debian unstable/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:197 http://127.0.0.1:9999/debian unstable/main amd64 libwebpdemux2 amd64 0.6.1-2 [87.5 kB] Get:198 http://127.0.0.1:9999/debian unstable/main amd64 libwebpmux3 amd64 0.6.1-2 [97.7 kB] Get:199 http://127.0.0.1:9999/debian unstable/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:200 http://127.0.0.1:9999/debian unstable/main amd64 pandoc-data all 2.2-1 [328 kB] Get:201 http://127.0.0.1:9999/debian unstable/main amd64 pandoc amd64 2.2-1 [14.9 MB] Get:202 http://127.0.0.1:9999/debian unstable/main amd64 preview-latex-style all 11.91-1 [201 kB] Get:203 http://127.0.0.1:9999/debian unstable/main amd64 python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB] Get:204 http://127.0.0.1:9999/debian unstable/main amd64 python-six all 1.11.0-2 [15.1 kB] Get:205 http://127.0.0.1:9999/debian unstable/main amd64 python-dateutil all 2.6.1-1 [61.1 kB] Get:206 http://127.0.0.1:9999/debian unstable/main amd64 python-epydoc all 3.0.1+dfsg-17 [221 kB] Get:207 http://127.0.0.1:9999/debian unstable/main amd64 python-numpy amd64 1:1.13.3-2 [1950 kB] Get:208 http://127.0.0.1:9999/debian unstable/main amd64 python-tz all 2018.4-1 [33.5 kB] Get:209 http://127.0.0.1:9999/debian unstable/main amd64 python-pandas-lib amd64 0.22.0-6 [3056 kB] Get:210 http://127.0.0.1:9999/debian unstable/main amd64 python-pkg-resources all 39.0.1-2 [171 kB] Get:211 http://127.0.0.1:9999/debian unstable/main amd64 python-pandas all 0.22.0-6 [2776 kB] Get:212 http://127.0.0.1:9999/debian unstable/main amd64 python-pil amd64 5.1.0-1 [381 kB] Get:213 http://127.0.0.1:9999/debian unstable/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] Get:214 http://127.0.0.1:9999/debian unstable/main amd64 python3-pkg-resources all 39.0.1-2 [142 kB] Get:215 http://127.0.0.1:9999/debian unstable/main amd64 python3-tz all 2018.4-1 [26.9 kB] Get:216 http://127.0.0.1:9999/debian unstable/main amd64 python3-babel all 2.4.0+dfsg.1-2 [83.7 kB] Get:217 http://127.0.0.1:9999/debian unstable/main amd64 python3-certifi all 2018.1.18-3 [144 kB] Get:218 http://127.0.0.1:9999/debian unstable/main amd64 python3-chardet all 3.0.4-1 [80.2 kB] Get:219 http://127.0.0.1:9999/debian unstable/main amd64 python3-commonmark-bkrs all 0.5.4+ds-1 [27.7 kB] Get:220 http://127.0.0.1:9999/debian unstable/main amd64 python3-roman all 2.0.0-3 [8768 B] Get:221 http://127.0.0.1:9999/debian unstable/main amd64 python3-docutils all 0.14+dfsg-3 [377 kB] Get:222 http://127.0.0.1:9999/debian unstable/main amd64 python3-idna all 2.6-1 [34.3 kB] Get:223 http://127.0.0.1:9999/debian unstable/main amd64 python3-imagesize all 0.7.1-1 [3886 B] Get:224 http://127.0.0.1:9999/debian unstable/main amd64 python3-markupsafe amd64 1.0-1+b1 [14.5 kB] Get:225 http://127.0.0.1:9999/debian unstable/main amd64 python3-jinja2 all 2.10-1 [106 kB] Get:226 http://127.0.0.1:9999/debian unstable/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get:227 http://127.0.0.1:9999/debian unstable/main amd64 python3-six all 1.11.0-2 [15.2 kB] Get:228 http://127.0.0.1:9999/debian unstable/main amd64 python3-packaging all 17.1-1 [18.3 kB] Get:229 http://127.0.0.1:9999/debian unstable/main amd64 python3-pygments all 2.2.0+dfsg-1 [588 kB] Get:230 http://127.0.0.1:9999/debian unstable/main amd64 python3-recommonmark all 0.4.0+ds-2 [10.1 kB] Get:231 http://127.0.0.1:9999/debian unstable/main amd64 python3-urllib3 all 1.22-1 [97.9 kB] Get:232 http://127.0.0.1:9999/debian unstable/main amd64 python3-requests all 2.18.4-2 [77.1 kB] Get:233 http://127.0.0.1:9999/debian unstable/main amd64 sphinx-common all 1.7.4-1 [434 kB] Get:234 http://127.0.0.1:9999/debian unstable/main amd64 python3-sphinx all 1.7.4-1 [444 kB] Get:235 http://127.0.0.1:9999/debian unstable/main amd64 texlive-fonts-recommended all 2018.20180416-1 [5294 kB] Get:236 http://127.0.0.1:9999/debian unstable/main amd64 texlive-plain-generic all 2018.20180416-1 [23.8 MB] Get:237 http://127.0.0.1:9999/debian unstable/main amd64 texlive-generic-extra all 2018.20180416-1 [31.4 kB] Get:238 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-recommended all 2018.20180416-1 [15.3 MB] Get:239 http://127.0.0.1:9999/debian unstable/main amd64 texlive-pictures all 2018.20180416-1 [4091 kB] Get:240 http://127.0.0.1:9999/debian unstable/main amd64 texlive-latex-extra all 2018.20180416-1 [11.0 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 295 MB in 3s (90.8 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2_amd64.deb ... Unpacking bsdmainutils (11.1.2) ... Selecting previously unselected package groff-base. Preparing to unpack .../01-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../02-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../03-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../04-libpython2.7-minimal_2.7.15-1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.15-1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../05-python2.7-minimal_2.7.15-1_amd64.deb ... Unpacking python2.7-minimal (2.7.15-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../06-python-minimal_2.7.15~rc1-1_amd64.deb ... Unpacking python-minimal (2.7.15~rc1-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../07-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../08-libexpat1_2.2.5-3_amd64.deb ... Unpacking libexpat1:amd64 (2.2.5-3) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../09-libncursesw6_6.1+20180210-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.1+20180210-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../10-readline-common_7.0-3_all.deb ... Unpacking readline-common (7.0-3) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../11-libreadline7_7.0-3+b1_amd64.deb ... Unpacking libreadline7:amd64 (7.0-3+b1) ... 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Selecting previously unselected package python. (Reading database ... 12213 files and directories currently installed.) Preparing to unpack .../00-python_2.7.15~rc1-1_amd64.deb ... Unpacking python (2.7.15~rc1-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../01-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../02-m4_1.4.18-1_amd64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package flex. Preparing to unpack .../03-flex_2.6.4-6.1_amd64.deb ... Unpacking flex (2.6.4-6.1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../04-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package libpython3.6-minimal:amd64. Preparing to unpack .../05-libpython3.6-minimal_3.6.5-5_amd64.deb ... Unpacking libpython3.6-minimal:amd64 (3.6.5-5) ... 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Setting up libssl1.1:amd64 (1.1.0h-2) ... Setting up libpython3.6-minimal:amd64 (3.6.5-5) ... Setting up libexpat1:amd64 (2.2.5-3) ... Setting up python3.6-minimal (3.6.5-5) ... Setting up python3-minimal (3.6.5-3) ... Selecting previously unselected package python3. (Reading database ... 13598 files and directories currently installed.) Preparing to unpack .../000-python3_3.6.5-3_amd64.deb ... Unpacking python3 (3.6.5-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package ucf. Preparing to unpack .../002-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package tex-common. Preparing to unpack .../003-tex-common_6.09_all.deb ... Unpacking tex-common (6.09) ... Selecting previously unselected package tzdata. Preparing to unpack .../004-tzdata_2018d-1_all.deb ... Unpacking tzdata (2018d-1) ... 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Setting up procps (2:3.3.14-1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libssl1.0.2:amd64 (1.0.2o-1) ... Setting up libjbig2dec0:amd64 (0.13-6) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Setting up libpixman-1-0:amd64 (0.34.0-2) ... Setting up libblas3:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libssh2-1:amd64 (1.8.0-1) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up libldap-2.4-2:amd64 (2.4.45+dfsg-1) ... Setting up t1utils (1.41-2) ... Setting up python-babel-localedata (2.4.0+dfsg.1-2) ... Setting up openssl (1.1.0h-2) ... Setting up sphinx-common (1.7.4-1) ... Setting up libijs-0.35:amd64 (0.35-13) ... Setting up libsqlite3-0:amd64 (3.23.1-1) ... Setting up libbison-dev:amd64 (2:3.0.4.dfsg-1+b1) ... Setting up libboost-atomic1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up libexpat1-dev:amd64 (2.2.5-3) ... Setting up libpotrace0 (1.14-2) ... Setting up libboost-python1.62.0 (1.62.0+dfsg-5+b1) ... Setting up icu-devtools (57.1-9) ... Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libboost-dev:amd64 (1.62.0.1) ... Setting up bison (2:3.0.4.dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.18) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.2-2) ... Setting up ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 133 added, 0 removed; done. Setting up libtexluajit2:amd64 (2018.20180416.47457-2) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-6) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libdbus-1-3:amd64 (1.12.8-1) ... Setting up libboost-system1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up liblzo2-2:amd64 (2.08-1.2+b2) ... Setting up fonts-lmodern (2.004.5-3) ... Setting up libavahi-common-data:amd64 (0.7-4) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libboost-atomic1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libpaper1:amd64 (1.1.24+nmu5) ... Creating config file /etc/papersize with new version Setting up libpython3.6-stdlib:amd64 (3.6.5-5) ... Setting up libboost-date-time1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libpaper-utils (1.1.24+nmu5) ... Setting up fontconfig-config (2.13.0-4) ... Setting up python3.6 (3.6.5-5) ... Setting up tex-common (6.09) ... update-language: texlive-base not installed and configured, doing nothing! Setting up pandoc (2.2-1) ... Setting up gettext (0.19.8.1-6) ... Setting up flex (2.6.4-6.1) ... Setting up libsqlite3-dev:amd64 (3.23.1-1) ... Setting up libarchive13:amd64 (3.2.2-3.1) ... Setting up libboost-thread1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up liblapack3:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libboost-regex1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up python2.7 (2.7.15-1) ... Setting up libharfbuzz0b:amd64 (1.7.6-1) ... Setting up preview-latex-style (11.91-1) ... Setting up autoconf (2.69-11) ... Setting up libicu-dev (57.1-9) ... Setting up file (1:5.33-2) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up libpython-stdlib:amd64 (2.7.15~rc1-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libboost-system1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libwebpmux3:amd64 (0.6.1-2) ... Setting up libpython2.7:amd64 (2.7.15-1) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libwebpdemux2:amd64 (0.6.1-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:amd64 (2.7.15-1) ... Setting up libavahi-common3:amd64 (0.7-4) ... Setting up python2.7-dev (2.7.15-1) ... Setting up libxcb1:amd64 (1.13-1) ... Setting up python (2.7.15~rc1-1) ... Setting up libboost-chrono1.62.0:amd64 (1.62.0+dfsg-5+b1) ... Setting up libpython3.6:amd64 (3.6.5-5) ... Setting up libtool (2.4.6-2.1) ... Setting up libpython3-stdlib:amd64 (3.6.5-3) ... Setting up libpython-dev:amd64 (2.7.15~rc1-1) ... Setting up libfontconfig1:amd64 (2.13.0-4) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libxcb-render0:amd64 (1.13-1) ... Setting up libharfbuzz-icu0:amd64 (1.7.6-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.5-3) ... Setting up libboost-regex1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up python-dev (2.7.15~rc1-1) ... Setting up libboost-system-dev:amd64 (1.62.0.1) ... Setting up python3-alabaster (0.7.8-1) ... Setting up python3-idna (2.6-1) ... Setting up python3-six (1.11.0-2) ... Setting up python-tz (2018.4-1) ... Setting up libx11-6:amd64 (2:1.6.5-1) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.1.18-3) ... Setting up python3-commonmark-bkrs (0.5.4+ds-1) ... Setting up python3-pkg-resources (39.0.1-2) ... Setting up python-pkg-resources (39.0.1-2) ... Setting up libboost-chrono1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libpython3.6-dev:amd64 (3.6.5-5) ... Setting up python-numpy (1:1.13.3-2) ... Setting up python3-markupsafe (1.0-1+b1) ... Setting up python-epydoc (3.0.1+dfsg-17) ... Setting up python-six (1.11.0-2) ... Setting up python-pandas-lib (0.22.0-6) ... Setting up python3-chardet (3.0.4-1) ... Setting up python3-jinja2 (2.10-1) ... Setting up libboost-thread1.62-dev:amd64 (1.62.0+dfsg-5+b1) ... Setting up libxcb-shm0:amd64 (1.13-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libboost-regex-dev:amd64 (1.62.0.1) ... Setting up libavahi-client3:amd64 (0.7-4) ... Setting up python3-urllib3 (1.22-1) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up python3-packaging (17.1-1) ... Setting up python3.6-dev (3.6.5-5) ... Setting up python3-lib2to3 (3.6.5-3) ... Setting up dh-python (3.20180326) ... Setting up python-pil:amd64 (5.1.0-1) ... Setting up python3-tz (2018.4-1) ... Setting up python3-distutils (3.6.5-3) ... Setting up libpython3-dev:amd64 (3.6.5-3) ... Setting up python3-pygments (2.2.0+dfsg-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-imagesize (0.7.1-1) ... Setting up libboost-thread-dev:amd64 (1.62.0.1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3-dev (3.6.5-3) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up python3-babel (2.4.0+dfsg.1-2) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up python-dateutil (2.6.1-1) ... Setting up python3-requests (2.18.4-2) ... Setting up libcups2:amd64 (2.2.7-3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.15.10-3) ... Setting up libcurl3:amd64 (7.58.0-2) ... Setting up libboost-python1.62-dev (1.62.0+dfsg-5+b1) ... Setting up python-pandas (0.22.0-6) ... Setting up libcupsimage2:amd64 (2.2.7-3) ... Setting up cmake (3.11.1-1) ... Setting up libgs9:amd64 (9.22~dfsg-2.1) ... Setting up libboost-python-dev (1.62.0.1) ... Setting up texlive-binaries (2018.20180416.47457-2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2018.20180416-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up texlive-fonts-recommended (2018.20180416-1) ... Setting up texlive-plain-generic (2018.20180416-1) ... Setting up texlive-latex-base (2018.20180416-1) ... Setting up texlive-latex-recommended (2018.20180416-1) ... Setting up texlive-pictures (2018.20180416-1) ... Setting up texlive-generic-extra (2018.20180416-1) ... Setting up latexmk (1:4.41-1) ... Setting up texlive-latex-extra (2018.20180416-1) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-3) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-3) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-2) ... Setting up python3-sphinx (1.7.4-1) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1) ... Setting up sbuild-build-depends-rdkit-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... Processing triggers for ca-certificates (20180409) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.09) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bison_2:3.0.4.dfsg-1+b1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20180409 clang-6.0_1:6.0-3 cmake_3.11.1-1 cmake-data_3.11.1-1 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-python_3.20180326 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 docutils-common_0.14+dfsg-3 doxygen_1.8.13-10 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 flex_2.6.4-6.1 fontconfig-config_2.13.0-4 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hostname_3.20 icu-devtools_57.1-9 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 latexmk_1:4.41-1 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 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libboost-thread1.62.0_1.62.0+dfsg-5+b1 libboost1.62-dev_1.62.0+dfsg-5+b1 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcups2_2.2.7-3 libcupsimage2_2.2.7-3 libcurl3_7.58.0-2 libdb5.3_5.3.28-13.1+b1 libdbus-1-3_1.12.8-1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libeatmydata1_105-6 libedit2_3.1-20170329-1 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.1-2 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libfontconfig1_2.13.0-4 libfreetype6_2.8.1-2 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-17 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 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sbuild-build-depends-rdkit-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sgml-base_1.29 sphinx-common_1.7.4-1 sysvinit-utils_2.88dsf-59.10 t1utils_1.41-2 tar_1.30+dfsg-1 tex-common_6.09 texlive-base_2018.20180416-1 texlive-binaries_2018.20180416.47457-2 texlive-fonts-recommended_2018.20180416-1 texlive-generic-extra_2018.20180416-1 texlive-latex-base_2018.20180416-1 texlive-latex-extra_2018.20180416-1 texlive-latex-recommended_2018.20180416-1 texlive-pictures_2018.20180416-1 texlive-plain-generic_2018.20180416-1 tzdata_2018d-1 ucf_3.0038 util-linux_2.31.1-0.5 x11-common_1:7.7+19 xdg-utils_1.1.2-2 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Mar 26 11:41:35 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rdkit_201709.3+dfsg-1.dsc dpkg-source: info: extracting rdkit in /<>/rdkit-201709.3+dfsg dpkg-source: info: unpacking rdkit_201709.3+dfsg.orig.tar.xz dpkg-source: info: unpacking rdkit_201709.3+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-ec0a2326-e05c-4a6f-8303-ecb418dc1804 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 201709.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build rdkit-201709.3+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --buildsystem=cmake --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/rdkit-201709.3+dfsg' find /<>/rdkit-201709.3+dfsg -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db rm -f \ Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_reference.log \ Code/ForceField/MMFF/test_data/MMFF94s_reference.log \ Code/ForceField/MMFF/test_data/testMMFFForceField.log \ Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \ Code/GraphMol/Depictor/test_data/collisions.out.sdf \ Code/GraphMol/Depictor/test_data/first_200.out.sdf \ Code/GraphMol/Depictor/test_data/test1.out.sdf \ Code/GraphMol/FileParsers/test_data/blah.sdf \ Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \ Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \ Code/GraphMol/FileParsers/test_data/outSmiles.csv \ Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \ Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \ Code/GraphMol/SLNParse/lex.yysln.cpp \ Code/GraphMol/SLNParse/sln.tab.cpp \ Code/GraphMol/SLNParse/sln.tab.hpp \ Code/GraphMol/SmilesParse/lex.yysmarts.cpp \ Code/GraphMol/SmilesParse/lex.yysmiles.cpp \ Code/GraphMol/SmilesParse/smarts.tab.cpp \ Code/GraphMol/SmilesParse/smarts.tab.hpp \ Code/GraphMol/SmilesParse/smiles.tab.cpp \ Code/GraphMol/SmilesParse/smiles.tab.hpp \ Code/GraphMol/Wrap/test_data/outNCI_few.sdf \ Code/GraphMol/Wrap/test_data/outSmiles.txt \ Code/RDGeneral/versions.cpp \ Docs/Book/Cartridge.rst \ Docs/Book/Cookbook.rst \ Docs/Book/Install.rst \ Docs/Book/Overview.rst \ rdkit/ML/Data/test_data/testgeneral.dat.pkl \ rdkit/ML/Data/test_data/testquant.qdat.pkl dh_auto_clean make[1]: Leaving directory '/<>/rdkit-201709.3+dfsg' dh_clean -O--buildsystem=cmake -O--parallel debian/rules build-arch dh build-arch --with python2 --buildsystem=cmake --parallel dh_update_autotools_config -a -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/rdkit-201709.3+dfsg' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF \ -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON \ -DRDK_OPTIMIZE_NATIVE=OFF cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_NATIVE=OFF -- The C compiler identification is Clang 6.0.0 -- The CXX compiler identification is Clang 6.0.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found PythonInterp: /usr/bin/python (found version "2.7.15") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.15") -- Boost version: 1.62.0 -- Found the following Boost libraries: -- python Python Install directory /usr/lib/python2.7/dist-packages -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Eigen3 not found, disabling the Descriptors3D build. -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.62.0 -- Found the following Boost libraries: -- thread -- system -- chrono -- date_time -- atomic -- Boost version: 1.62.0 -- Found the following Boost libraries: -- serialization == Using strict rotor definition == Updating Filters.cpp from pains file == Done updating pains files -- Boost version: 1.62.0 -- Found the following Boost libraries: -- regex -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/rdkit-201709.3+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/rdkit-201709.3+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j8 -Oline make[2]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/rdkit-201709.3+dfsg -B/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[2]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make[2]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 all make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201709.3+dfsg /<>/rdkit-201709.3+dfsg/Code/ML/Cluster/Murtagh /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= Scanning dependencies of target hc make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make 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/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/External/INCHI-API /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target inchi_support make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/rdkit-201709.3+dfsg /<>/rdkit-201709.3+dfsg/Code/ChemicalFeatures /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target ChemicalFeatures make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 0%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /<>/rdkit-201709.3+dfsg/External/INCHI-API/python/noinchi.py /<>/rdkit-201709.3+dfsg/rdkit/Chem/inchi.py make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Built target inchi_support make[3]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-array-bounds -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hcdriver.c.o -c /<>/rdkit-201709.3+dfsg/Code/ML/Cluster/Murtagh/hcdriver.c make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-array-bounds -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hc.c.o -c /<>/rdkit-201709.3+dfsg/Code/ML/Cluster/Murtagh/hc.c make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Linking C shared library ../../../../lib/libRDKithc.so make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-array-bounds -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2017.09.3 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2017.09.3 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Built target hc make[3]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/versions.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/LocaleSwitcher.cpp /<>/rdkit-201709.3+dfsg/Code/RDGeneral/LocaleSwitcher.cpp:37:10: fatal error: 'xlocale.h' file not found #include ^~~~~~~~~~~ 1 error generated. make[4]: *** [Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make:131: Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o] Error 1 make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: *** Waiting for unfinished jobs.... make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/RDLog.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/utils.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/Invariant.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 2%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2017.09.3 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2017.09.3 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' [ 2%] Built target ChemicalFeatures make[3]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/Dict.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' cd /<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<>/rdkit-201709.3+dfsg/Code -g -O2 -fdebug-prefix-map=/<>/rdkit-201709.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /<>/rdkit-201709.3+dfsg/Code/RDGeneral/types.cpp make[4]: Leaving directory '/<>/rdkit-201709.3+dfsg/obj-x86_64-linux-gnu' make[3]: *** [CMakeFiles/Makefile2:268: Code/RDGeneral/CMakeFiles/RDGeneral.dir/all] Error 2 make[2]: *** [Makefile:166: all] Error 2 dh_auto_build: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2 make[1]: *** [debian/rules:74: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<>/rdkit-201709.3+dfsg' make: *** [debian/rules:20: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T12:15:32Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 123280 Build-Time: 9 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 61 Job: rdkit_201709.3+dfsg-1 Machine Architecture: amd64 Package: rdkit Package-Time: 90 Source-Version: 201709.3+dfsg-1 Space: 123280 Status: attempted Version: 201709.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 2018-05-02T12:15:32Z Build needed 00:01:30, 123280k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 91.580647886s DC-Time-Estimation: 91.580647886 versus expected 1328 (r/m: 13.500880160327108 ; m: 91.580647886)