DC-Build-Header: relion 1.4+dfsg-3 / 2018-05-02 12:36:38 +0000 DC-Task: type:rebuild-binarch-only source:relion version:1.4+dfsg-3 chroot:unstable esttime:454 logfile:/tmp/relion_1.4+dfsg-3_unstable_clang60.log modes:clang60:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang60 relion_1.4+dfsg-3' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-1-196.eu-central-1.compute.internal +==============================================================================+ | relion 1.4+dfsg-3 (amd64) Wed, 02 May 2018 12:36:38 +0000 | +==============================================================================+ Package: relion Version: 1.4+dfsg-3 Source Version: 1.4+dfsg-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-5c05f50f-85f2-4a48-aea0-1f157ddb5326' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang60 ------------ + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=6.0 + echo 'Install of clang-6.0' Install of clang-6.0 + apt-get update Get:1 http://127.0.0.1:9999/debian unstable InRelease [242 kB] Get:2 http://127.0.0.1:9999/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:4 http://127.0.0.1:9999/debian unstable/main Sources 2018-05-02-0830.09.pdiff [16.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 Packages 2018-05-02-0830.09.pdiff [1781 B] Get:6 http://127.0.0.1:9999/debian unstable/main Translation-en [6016 kB] Fetched 6332 kB in 2s (2536 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-6.0 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 Suggested packages: gnustep gnustep-devel clang-6.0-doc Recommended packages: llvm-6.0-dev python libomp-dev libgpm2 The following NEW packages will be installed: clang-6.0 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-6.0-dev libclang1-6.0 libedit2 libjsoncpp1 libllvm6.0 libncurses5 libobjc-7-dev libobjc4 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 187 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 libbsd0 amd64 0.8.7-1 [92.1 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 libncurses5 amd64 6.1+20180210-2 [95.7 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libedit2 amd64 3.1-20170329-1 [85.2 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 libllvm6.0 amd64 1:6.0-3 [14.5 MB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libobjc4 amd64 8-20180425-1 [52.4 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libobjc-7-dev amd64 7.3.0-17 [204 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 libc6-i386 amd64 2.27-3 [2855 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 lib32gcc1 amd64 1:8-20180425-1 [47.8 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 lib32stdc++6 amd64 8-20180425-1 [406 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libclang-common-6.0-dev amd64 1:6.0-3 [3102 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libclang1-6.0 amd64 1:6.0-3 [6995 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 clang-6.0 amd64 1:6.0-3 [9175 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 0s (96.9 MB/s) Selecting previously unselected package libjsoncpp1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10022 files and directories currently installed.) Preparing to unpack .../00-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package libncurses5:amd64. Preparing to unpack .../02-libncurses5_6.1+20180210-2_amd64.deb ... Unpacking libncurses5:amd64 (6.1+20180210-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../03-libedit2_3.1-20170329-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20170329-1) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../04-libllvm6.0_1%3a6.0-3_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0-3) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../05-libobjc4_8-20180425-1_amd64.deb ... Unpacking libobjc4:amd64 (8-20180425-1) ... Selecting previously unselected package libobjc-7-dev:amd64. Preparing to unpack .../06-libobjc-7-dev_7.3.0-17_amd64.deb ... Unpacking libobjc-7-dev:amd64 (7.3.0-17) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../07-libc6-i386_2.27-3_amd64.deb ... Unpacking libc6-i386 (2.27-3) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../08-lib32gcc1_1%3a8-20180425-1_amd64.deb ... Unpacking lib32gcc1 (1:8-20180425-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../09-lib32stdc++6_8-20180425-1_amd64.deb ... Unpacking lib32stdc++6 (8-20180425-1) ... Selecting previously unselected package libclang-common-6.0-dev. Preparing to unpack .../10-libclang-common-6.0-dev_1%3a6.0-3_amd64.deb ... Unpacking libclang-common-6.0-dev (1:6.0-3) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../11-libclang1-6.0_1%3a6.0-3_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0-3) ... Selecting previously unselected package clang-6.0. Preparing to unpack .../12-clang-6.0_1%3a6.0-3_amd64.deb ... Unpacking clang-6.0 (1:6.0-3) ... Setting up libncurses5:amd64 (6.1+20180210-2) ... Setting up libobjc4:amd64 (8-20180425-1) ... Setting up libc6-i386 (2.27-3) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libobjc-7-dev:amd64 (7.3.0-17) ... Processing triggers for libc-bin (2.27-3) ... Setting up lib32gcc1 (1:8-20180425-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libedit2:amd64 (3.1-20170329-1) ... Setting up libllvm6.0:amd64 (1:6.0-3) ... Setting up libclang1-6.0:amd64 (1:6.0-3) ... Setting up lib32stdc++6 (8-20180425-1) ... Setting up libclang-common-6.0-dev (1:6.0-3) ... Setting up clang-6.0 (1:6.0-3) ... Processing triggers for libc-bin (2.27-3) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-6.0 g++-4.6 + ln -s clang-6.0 gcc-4.6 + ln -s clang-6.0 cpp-4.6 + ln -s clang-6.0 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-6.0 g++-4.7 + ln -s clang-6.0 gcc-4.7 + ln -s clang-6.0 cpp-4.7 + ln -s clang-6.0 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-6.0 g++-4.8 + ln -s clang-6.0 gcc-4.8 + ln -s clang-6.0 cpp-4.8 + ln -s clang-6.0 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-6.0 g++-4.9 + ln -s clang-6.0 gcc-4.9 + ln -s clang-6.0 cpp-4.9 + ln -s clang-6.0 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-6.0 g++-5 + ln -s clang-6.0 gcc-5 + ln -s clang-6.0 cpp-5 + ln -s clang-6.0 gcc + echo 'gcc-5 hold' + dpkg --set-selections + echo 'g++-5 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-6.0 g++-6 + ln -s clang-6.0 gcc-6 + ln -s clang-6.0 cpp-6 + ln -s clang-6.0 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-6.0 g++-7 + ln -s clang-6.0 gcc-7 + ln -s clang-6.0 cpp-7 + ln -s clang-6.0 gcc + echo 'gcc-7 hold' + dpkg --set-selections + echo 'g++-7 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-6.0 g++-8 + ln -s clang-6.0 gcc-8 + ln -s clang-6.0 cpp-8 + ln -s clang-6.0 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/relion-AkQa3v + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang60'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'relion' packaging is maintained in the 'Git' version control system at: git://anonscm.debian.org/debian-med/relion.git Please use: git clone git://anonscm.debian.org/debian-med/relion.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 559 kB of source archives. Get:1 http://127.0.0.1:9999/debian unstable/main relion 1.4+dfsg-3 (dsc) [2628 B] Get:2 http://127.0.0.1:9999/debian unstable/main relion 1.4+dfsg-3 (tar) [548 kB] Get:3 http://127.0.0.1:9999/debian unstable/main relion 1.4+dfsg-3 (diff) [8276 B] Fetched 559 kB in 0s (3934 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/relion-AkQa3v/relion-1.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/relion-AkQa3v' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-6TYuQn/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-6TYuQn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6TYuQn/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-6TYuQn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6TYuQn/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-6TYuQn/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-6TYuQn/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 10771 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec (>= 0.3), libfltk1.3-dev, libfftw3-dev, libopenmpi-dev Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, dh-exec (>= 0.3), libfltk1.3-dev, libfftw3-dev, libopenmpi-dev dpkg-deb: building package 'sbuild-build-depends-relion-dummy' in '/<>/resolver-6TYuQn/apt_archive/sbuild-build-depends-relion-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-relion-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-6TYuQn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6TYuQn/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-6TYuQn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6TYuQn/apt_archive ./ Sources [530 B] Get:5 copy:/<>/resolver-6TYuQn/apt_archive ./ Packages [609 B] Fetched 2102 B in 0s (0 B/s) Reading package lists... Reading package lists... Install relion build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libcairo2 libcroco3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3 libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1 libfreetype6 libgfortran4 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm5.0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpthread-stubs0-dev librdmacm1 libsensors4 libsigsegv2 libssl1.0.2 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf ucf x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libfftw3-doc fltk1.3-doc libcairo2-dev libjpeg-dev libpng-dev libxext-dev libxft-dev libxinerama-dev zlib1g-dev | libz-dev krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils lm-sensors gfortran | fortran95-compiler gcj-jdk libxcb-doc m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl fluid libgl1-mesa-dev | libgl-dev libglu1-mesa-dev | libglu-dev libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libx11-doc xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libcairo2 libcroco3 libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-quad3 libfftw3-single3 libfile-stripnondeterminism-perl libfltk-cairo1.3 libfltk-forms1.3 libfltk-gl1.3 libfltk-images1.3 libfltk1.3 libfltk1.3-dev libfontconfig1 libfreetype6 libgfortran4 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu57 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm5.0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpthread-stubs0-dev librdmacm1 libsensors4 libsigsegv2 libssl1.0.2 libtimedate-perl libtool libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxinerama1 libxml2 libxrender1 libxshmfence1 libxxf86vm1 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-relion-dummy ucf x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 63.6 MB of archives. After this operation, 344 MB of additional disk space will be used. Get:1 copy:/<>/resolver-6TYuQn/apt_archive ./ sbuild-build-depends-relion-dummy 0.invalid.0 [904 B] Get:2 http://127.0.0.1:9999/debian unstable/main amd64 bsdmainutils amd64 11.1.2 [190 kB] Get:3 http://127.0.0.1:9999/debian unstable/main amd64 groff-base amd64 1.22.3-10 [1176 kB] Get:4 http://127.0.0.1:9999/debian unstable/main amd64 libpipeline1 amd64 1.5.0-1 [29.0 kB] Get:5 http://127.0.0.1:9999/debian unstable/main amd64 man-db amd64 2.8.3-2 [1180 kB] Get:6 http://127.0.0.1:9999/debian unstable/main amd64 libmagic-mgc amd64 1:5.33-2 [234 kB] Get:7 http://127.0.0.1:9999/debian unstable/main amd64 libmagic1 amd64 1:5.33-2 [113 kB] Get:8 http://127.0.0.1:9999/debian unstable/main amd64 file amd64 1:5.33-2 [65.6 kB] Get:9 http://127.0.0.1:9999/debian unstable/main amd64 gettext-base amd64 0.19.8.1-6 [122 kB] Get:10 http://127.0.0.1:9999/debian unstable/main amd64 libkeyutils1 amd64 1.5.9-9.2 [12.9 kB] Get:11 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5support0 amd64 1.16-2 [62.8 kB] Get:12 http://127.0.0.1:9999/debian unstable/main amd64 libk5crypto3 amd64 1.16-2 [121 kB] Get:13 http://127.0.0.1:9999/debian unstable/main amd64 libkrb5-3 amd64 1.16-2 [316 kB] Get:14 http://127.0.0.1:9999/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.16-2 [158 kB] Get:15 http://127.0.0.1:9999/debian unstable/main amd64 libssl1.0.2 amd64 1.0.2o-1 [1296 kB] Get:16 http://127.0.0.1:9999/debian unstable/main amd64 openssh-client amd64 1:7.7p1-2 [802 kB] Get:17 http://127.0.0.1:9999/debian unstable/main amd64 ucf all 3.0038 [67.8 kB] Get:18 http://127.0.0.1:9999/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:19 http://127.0.0.1:9999/debian unstable/main amd64 m4 amd64 1.4.18-1 [202 kB] Get:20 http://127.0.0.1:9999/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:21 http://127.0.0.1:9999/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:22 http://127.0.0.1:9999/debian unstable/main amd64 automake all 1:1.15.1-3.1 [736 kB] Get:23 http://127.0.0.1:9999/debian unstable/main amd64 autopoint all 0.19.8.1-6 [434 kB] Get:24 http://127.0.0.1:9999/debian unstable/main amd64 libtool all 2.4.6-2.1 [547 kB] Get:25 http://127.0.0.1:9999/debian unstable/main amd64 dh-autoreconf all 17 [16.5 kB] Get:26 http://127.0.0.1:9999/debian unstable/main amd64 libarchive-zip-perl all 1.60-1 [95.6 kB] Get:27 http://127.0.0.1:9999/debian unstable/main amd64 libfile-stripnondeterminism-perl all 0.041-1 [19.9 kB] Get:28 http://127.0.0.1:9999/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:29 http://127.0.0.1:9999/debian unstable/main amd64 dh-strip-nondeterminism all 0.041-1 [12.0 kB] Get:30 http://127.0.0.1:9999/debian unstable/main amd64 libglib2.0-0 amd64 2.56.1-2 [2928 kB] Get:31 http://127.0.0.1:9999/debian unstable/main amd64 libicu57 amd64 57.1-9 [7698 kB] Get:32 http://127.0.0.1:9999/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1 [725 kB] Get:33 http://127.0.0.1:9999/debian unstable/main amd64 libcroco3 amd64 0.6.12-2 [144 kB] Get:34 http://127.0.0.1:9999/debian unstable/main amd64 gettext amd64 0.19.8.1-6 [1302 kB] Get:35 http://127.0.0.1:9999/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:36 http://127.0.0.1:9999/debian unstable/main amd64 po-debconf all 1.0.20 [247 kB] Get:37 http://127.0.0.1:9999/debian unstable/main amd64 debhelper all 11.2.1 [1013 kB] Get:38 http://127.0.0.1:9999/debian unstable/main amd64 dh-exec amd64 0.23+b1 [26.7 kB] Get:39 http://127.0.0.1:9999/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:40 http://127.0.0.1:9999/debian unstable/main amd64 fontconfig-config all 2.13.0-4 [280 kB] Get:41 http://127.0.0.1:9999/debian unstable/main amd64 libnl-3-200 amd64 3.2.27-2 [61.5 kB] Get:42 http://127.0.0.1:9999/debian unstable/main amd64 libnl-route-3-200 amd64 3.2.27-2 [136 kB] Get:43 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs1 amd64 17.1-2 [45.2 kB] Get:44 http://127.0.0.1:9999/debian unstable/main amd64 ibverbs-providers amd64 17.1-2 [170 kB] Get:45 http://127.0.0.1:9999/debian unstable/main amd64 libexpat1 amd64 2.2.5-3 [96.8 kB] Get:46 http://127.0.0.1:9999/debian unstable/main amd64 libpng16-16 amd64 1.6.34-1 [287 kB] Get:47 http://127.0.0.1:9999/debian unstable/main amd64 libfreetype6 amd64 2.8.1-2 [461 kB] Get:48 http://127.0.0.1:9999/debian unstable/main amd64 libfontconfig1 amd64 2.13.0-4 [343 kB] Get:49 http://127.0.0.1:9999/debian unstable/main amd64 libpixman-1-0 amd64 0.34.0-2 [529 kB] Get:50 http://127.0.0.1:9999/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:51 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:52 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1 amd64 1.13-1 [136 kB] Get:53 http://127.0.0.1:9999/debian unstable/main amd64 libx11-data all 2:1.6.5-1 [292 kB] Get:54 http://127.0.0.1:9999/debian unstable/main amd64 libx11-6 amd64 2:1.6.5-1 [749 kB] Get:55 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-render0 amd64 1.13-1 [108 kB] Get:56 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-shm0 amd64 1.13-1 [98.3 kB] Get:57 http://127.0.0.1:9999/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:58 http://127.0.0.1:9999/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:59 http://127.0.0.1:9999/debian unstable/main amd64 libcairo2 amd64 1.15.10-3 [664 kB] Get:60 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-common all 2.4.91-2 [13.5 kB] Get:61 http://127.0.0.1:9999/debian unstable/main amd64 libdrm2 amd64 2.4.91-2 [39.9 kB] Get:62 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.91-2 [28.4 kB] Get:63 http://127.0.0.1:9999/debian unstable/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:64 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-intel1 amd64 2.4.91-2 [69.3 kB] Get:65 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.91-2 [26.0 kB] Get:66 http://127.0.0.1:9999/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.91-2 [31.1 kB] Get:67 http://127.0.0.1:9999/debian unstable/main amd64 libelf1 amd64 0.170-0.4 [162 kB] Get:68 http://127.0.0.1:9999/debian unstable/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:69 http://127.0.0.1:9999/debian unstable/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:70 http://127.0.0.1:9999/debian unstable/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:71 http://127.0.0.1:9999/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-5 [172 kB] Get:72 http://127.0.0.1:9999/debian unstable/main amd64 librdmacm1 amd64 17.1-2 [65.8 kB] Get:73 http://127.0.0.1:9999/debian unstable/main amd64 libfabric1 amd64 1.5.3-1 [303 kB] Get:74 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-double3 amd64 3.3.7-1+b1 [740 kB] Get:75 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-long3 amd64 3.3.7-1+b1 [315 kB] Get:76 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.7-1+b1 [559 kB] Get:77 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-single3 amd64 3.3.7-1+b1 [770 kB] Get:78 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-bin amd64 3.3.7-1+b1 [51.0 kB] Get:79 http://127.0.0.1:9999/debian unstable/main amd64 libfftw3-dev amd64 3.3.7-1+b1 [2128 kB] Get:80 http://127.0.0.1:9999/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:81 http://127.0.0.1:9999/debian unstable/main amd64 libxcursor1 amd64 1:1.1.15-1 [36.4 kB] Get:82 http://127.0.0.1:9999/debian unstable/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:83 http://127.0.0.1:9999/debian unstable/main amd64 libxinerama1 amd64 2:1.1.3-1+b3 [16.7 kB] Get:84 http://127.0.0.1:9999/debian unstable/main amd64 libfltk1.3 amd64 1.3.4-7 [548 kB] Get:85 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-cairo1.3 amd64 1.3.4-7 [40.6 kB] Get:86 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-forms1.3 amd64 1.3.4-7 [46.9 kB] Get:87 http://127.0.0.1:9999/debian unstable/main amd64 libglvnd0 amd64 1.0.0+git20180308-2 [47.7 kB] Get:88 http://127.0.0.1:9999/debian unstable/main amd64 libglapi-mesa amd64 17.3.9-1 [61.4 kB] Get:89 http://127.0.0.1:9999/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.5-1 [185 kB] Get:90 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri2-0 amd64 1.13-1 [99.6 kB] Get:91 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-dri3-0 amd64 1.13-1 [99.3 kB] Get:92 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-glx0 amd64 1.13-1 [115 kB] Get:93 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-present0 amd64 1.13-1 [98.2 kB] Get:94 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-sync1 amd64 1.13-1 [102 kB] Get:95 http://127.0.0.1:9999/debian unstable/main amd64 libxcb-xfixes0 amd64 1.13-1 [102 kB] Get:96 http://127.0.0.1:9999/debian unstable/main amd64 libxdamage1 amd64 1:1.1.4-3 [14.4 kB] Get:97 http://127.0.0.1:9999/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:98 http://127.0.0.1:9999/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:99 http://127.0.0.1:9999/debian unstable/main amd64 libllvm5.0 amd64 1:5.0.1-4 [13.7 MB] Get:100 http://127.0.0.1:9999/debian unstable/main amd64 libsensors4 amd64 1:3.4.0-4 [53.3 kB] Get:101 http://127.0.0.1:9999/debian unstable/main amd64 libgl1-mesa-dri amd64 17.3.9-1 [5907 kB] Get:102 http://127.0.0.1:9999/debian unstable/main amd64 libglx-mesa0 amd64 17.3.9-1 [171 kB] Get:103 http://127.0.0.1:9999/debian unstable/main amd64 libglx0 amd64 1.0.0+git20180308-2 [29.9 kB] Get:104 http://127.0.0.1:9999/debian unstable/main amd64 libgl1 amd64 1.0.0+git20180308-2 [86.3 kB] Get:105 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-gl1.3 amd64 1.3.4-7 [71.9 kB] Get:106 http://127.0.0.1:9999/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:107 http://127.0.0.1:9999/debian unstable/main amd64 libfltk-images1.3 amd64 1.3.4-7 [59.5 kB] Get:108 http://127.0.0.1:9999/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:109 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:110 http://127.0.0.1:9999/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:111 http://127.0.0.1:9999/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get:112 http://127.0.0.1:9999/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:113 http://127.0.0.1:9999/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:114 http://127.0.0.1:9999/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:115 http://127.0.0.1:9999/debian unstable/main amd64 libxcb1-dev amd64 1.13-1 [173 kB] Get:116 http://127.0.0.1:9999/debian unstable/main amd64 libx11-dev amd64 2:1.6.5-1 [817 kB] Get:117 http://127.0.0.1:9999/debian unstable/main amd64 libfltk1.3-dev amd64 1.3.4-7 [831 kB] Get:118 http://127.0.0.1:9999/debian unstable/main amd64 libgfortran4 amd64 7.3.0-17 [487 kB] Get:119 http://127.0.0.1:9999/debian unstable/main amd64 libltdl7 amd64 2.4.6-2.1 [389 kB] Get:120 http://127.0.0.1:9999/debian unstable/main amd64 libnuma1 amd64 2.0.11-2.2 [33.8 kB] Get:121 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc5 amd64 1.11.10-1 [110 kB] Get:122 http://127.0.0.1:9999/debian unstable/main amd64 libnuma-dev amd64 2.0.11-2.2 [46.7 kB] Get:123 http://127.0.0.1:9999/debian unstable/main amd64 libltdl-dev amd64 2.4.6-2.1 [161 kB] Get:124 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-dev amd64 1.11.10-1 [172 kB] Get:125 http://127.0.0.1:9999/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.2.12-1 [37.1 kB] Get:126 http://127.0.0.1:9999/debian unstable/main amd64 libhwloc-plugins amd64 1.11.10-1 [16.7 kB] Get:127 http://127.0.0.1:9999/debian unstable/main amd64 libibverbs-dev amd64 17.1-2 [104 kB] Get:128 http://127.0.0.1:9999/debian unstable/main amd64 libpmix2 amd64 2.1.1~rc1-4 [340 kB] Get:129 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi3 amd64 3.0.1.real-1 [2099 kB] Get:130 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-common all 3.0.1.real-1 [158 kB] Get:131 http://127.0.0.1:9999/debian unstable/main amd64 openmpi-bin amd64 3.0.1.real-1 [203 kB] Get:132 http://127.0.0.1:9999/debian unstable/main amd64 libopenmpi-dev amd64 3.0.1.real-1 [936 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.6 MB in 1s (75.7 MB/s) Selecting previously unselected package bsdmainutils. 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Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../123-ocl-icd-libopencl1_2.2.12-1_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.12-1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../124-libhwloc-plugins_1.11.10-1_amd64.deb ... Unpacking libhwloc-plugins (1.11.10-1) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../125-libibverbs-dev_17.1-2_amd64.deb ... Unpacking libibverbs-dev:amd64 (17.1-2) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../126-libpmix2_2.1.1~rc1-4_amd64.deb ... Unpacking libpmix2:amd64 (2.1.1~rc1-4) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../127-libopenmpi3_3.0.1.real-1_amd64.deb ... Unpacking libopenmpi3:amd64 (3.0.1.real-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../128-openmpi-common_3.0.1.real-1_all.deb ... 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Setting up libpng16-16:amd64 (1.6.34-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpthread-stubs0-dev:amd64 (0.3-4) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libnuma1:amd64 (2.0.11-2.2) ... Setting up libelf1:amd64 (0.170-0.4) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2) ... No schema files found: doing nothing. Setting up libxshmfence1:amd64 (1.3-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libllvm5.0:amd64 (1:5.0.1-4) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up libglapi-mesa:amd64 (17.3.9-1) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:amd64 (3.3.7-1+b1) ... Setting up libicu57:amd64 (57.1-9) ... Setting up ucf (3.0038) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfreetype6:amd64 (2.8.1-2) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:amd64 (1:5.33-2) ... Setting up libdrm-common (2.4.91-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfftw3-quad3:amd64 (3.3.7-1+b1) ... Setting up libssl1.0.2:amd64 (1.0.2o-1) ... Setting up libx11-xcb1:amd64 (2:1.6.5-1) ... Setting up libpixman-1-0:amd64 (0.34.0-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up openmpi-common (3.0.1.real-1) ... Processing triggers for libc-bin (2.27-3) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:amd64 (2.4.6-2.1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libfftw3-single3:amd64 (3.3.7-1+b1) ... Setting up libsensors4:amd64 (1:3.4.0-4) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libnuma-dev:amd64 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-1) ... Setting up libkeyutils1:amd64 (1.5.9-9.2) ... Setting up bsdmainutils (11.1.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-2) ... Setting up libfftw3-long3:amd64 (3.3.7-1+b1) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-6) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libfftw3-bin (3.3.7-1+b1) ... Setting up fontconfig-config (2.13.0-4) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libltdl-dev:amd64 (2.4.6-2.1) ... Setting up gettext (0.19.8.1-6) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up libnl-route-3-200:amd64 (3.2.27-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:amd64 (1.11.10-1) ... Setting up libkrb5support0:amd64 (1.16-2) ... Setting up libdrm2:amd64 (2.4.91-2) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:amd64 (2.4.91-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libfftw3-dev:amd64 (3.3.7-1+b1) ... Setting up automake (1:1.15.1-3.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libdrm-radeon1:amd64 (2.4.91-2) ... Setting up libdrm-nouveau2:amd64 (2.4.91-2) ... Setting up libxcb1:amd64 (1.13-1) ... Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:amd64 (17.1-2) ... Setting up libxcb-present0:amd64 (1.13-1) ... Setting up libfontconfig1:amd64 (2.13.0-4) ... Setting up libxcb-dri2-0:amd64 (1.13-1) ... Setting up libxcb-dri3-0:amd64 (1.13-1) ... Setting up libk5crypto3:amd64 (1.16-2) ... Setting up libxcb-glx0:amd64 (1.13-1) ... Setting up libxcb-xfixes0:amd64 (1.13-1) ... Setting up libxcb-render0:amd64 (1.13-1) ... Setting up po-debconf (1.0.20) ... Setting up libdrm-amdgpu1:amd64 (2.4.91-2) ... Setting up libhwloc-dev:amd64 (1.11.10-1) ... Setting up libx11-6:amd64 (2:1.6.5-1) ... Setting up libgl1-mesa-dri:amd64 (17.3.9-1) ... Setting up libpmix2:amd64 (2.1.1~rc1-4) ... Setting up librdmacm1:amd64 (17.1-2) ... Setting up libxcb-sync1:amd64 (1.13-1) ... Setting up ibverbs-providers:amd64 (17.1-2) ... Setting up libxcb-shm0:amd64 (1.13-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxcb1-dev:amd64 (1.13-1) ... Setting up libkrb5-3:amd64 (1.16-2) ... Setting up libx11-dev:amd64 (2:1.6.5-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libibverbs-dev:amd64 (17.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libfabric1 (1.5.3-1) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up libxcursor1:amd64 (1:1.1.15-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libcairo2:amd64 (1.15.10-3) ... Setting up libxinerama1:amd64 (2:1.1.3-1+b3) ... Setting up libopenmpi3:amd64 (3.0.1.real-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3) ... Setting up openmpi-bin (3.0.1.real-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libfltk1.3:amd64 (1.3.4-7) ... Setting up libfltk-images1.3:amd64 (1.3.4-7) ... Setting up libglx-mesa0:amd64 (17.3.9-1) ... Setting up libfltk-forms1.3:amd64 (1.3.4-7) ... Setting up libopenmpi-dev:amd64 (3.0.1.real-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libfltk-cairo1.3:amd64 (1.3.4-7) ... Setting up libglx0:amd64 (1.0.0+git20180308-2) ... Setting up libgl1:amd64 (1.0.0+git20180308-2) ... Setting up libfltk-gl1.3:amd64 (1.3.4-7) ... Setting up libfltk1.3-dev (1.3.4-7) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1) ... Setting up dh-autoreconf (17) ... Setting up dh-exec (0.23+b1) ... Setting up sbuild-build-depends-relion-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-5-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.30-16 dpkg-dev_1.19.0.5 g++-7_7.3.0-17 gcc-7_7.3.0-17 libc6-dev_2.27-3 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 linux-libc-dev_4.15.17-1 Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-2 binutils_2.30-16 binutils-common_2.30-16 binutils-x86-64-linux-gnu_2.30-16 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.5 build-essential_12.5 bzip2_1.0.6-8.1 clang-6.0_1:6.0-3 coreutils_8.28-1 cpp_4:7.3.0-3 cpp-7_7.3.0-17 dash_0.5.8-2.10 debconf_1.5.66 debfoster_2.7-2.1+b1 debhelper_11.2.1 debian-archive-keyring_2017.7 debianutils_4.8.4 dh-autoreconf_17 dh-exec_0.23+b1 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 eatmydata_105-6 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-2 findutils_4.6.0+git+20171230-2 fontconfig-config_2.13.0-4 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3 g++-7_7.3.0-17 gcc_4:7.3.0-3 gcc-6-base_6.4.0-17 gcc-7_7.3.0-17 gcc-7-base_7.3.0-17 gcc-8-base_8-20180425-1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5+b1 hostname_3.20 ibverbs-providers_17.1-2 init-system-helpers_1.51 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8-20180425-1 lib32stdc++6_8-20180425-1 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libasan4_7.3.0-17 libatomic1_8-20180425-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-16 libblkid1_2.31.1-0.5 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3 libc-dev-bin_2.27-3 libc6_2.27-3 libc6-dev_2.27-3 libc6-i386_2.27-3 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcc1-0_8-20180425-1 libcilkrts5_7.3.0-17 libclang-common-6.0-dev_1:6.0-3 libclang1-6.0_1:6.0-3 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libdb5.3_5.3.28-13.1+b1 libdebconfclient0_0.243 libdpkg-perl_1.19.0.5 libdrm-amdgpu1_2.4.91-2 libdrm-common_2.4.91-2 libdrm-intel1_2.4.91-2 libdrm-nouveau2_2.4.91-2 libdrm-radeon1_2.4.91-2 libdrm2_2.4.91-2 libeatmydata1_105-6 libedit2_3.1-20170329-1 libelf1_0.170-0.4 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.5-3 libext2fs2_1.44.1-2 libfabric1_1.5.3-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.5 libffi6_3.2.1-8 libfftw3-bin_3.3.7-1+b1 libfftw3-dev_3.3.7-1+b1 libfftw3-double3_3.3.7-1+b1 libfftw3-long3_3.3.7-1+b1 libfftw3-quad3_3.3.7-1+b1 libfftw3-single3_3.3.7-1+b1 libfile-stripnondeterminism-perl_0.041-1 libfltk-cairo1.3_1.3.4-7 libfltk-forms1.3_1.3.4-7 libfltk-gl1.3_1.3.4-7 libfltk-images1.3_1.3.4-7 libfltk1.3_1.3.4-7 libfltk1.3-dev_1.3.4-7 libfontconfig1_2.13.0-4 libfreetype6_2.8.1-2 libgc1c2_1:7.4.2-8.2 libgcc-7-dev_7.3.0-17 libgcc1_1:8-20180425-1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-17 libgl1_1.0.0+git20180308-2 libgl1-mesa-dri_17.3.9-1 libglapi-mesa_17.3.9-1 libglib2.0-0_2.56.1-2 libglvnd0_1.0.0+git20180308-2 libglx-mesa0_17.3.9-1 libglx0_1.0.0+git20180308-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180425-1 libgpg-error0_1.29-4 libgssapi-krb5-2_1.16-2 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs-dev_17.1-2 libibverbs1_17.1-2 libicu57_57.1-9 libidn2-0_2.0.4-1.1 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180425-1 libjpeg62-turbo_1:1.5.2-2+b1 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libllvm5.0_1:5.0.1-4 libllvm6.0_1:6.0-3 liblsan0_8-20180425-1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.1.2-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.5 libmpc3_1.1.0-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libmpx2_8-20180425-1 libncurses5_6.1+20180210-2 libncursesw5_6.1+20180210-2 libnettle6_3.4-1 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libobjc-7-dev_7.3.0-17 libobjc4_8-20180425-1 libopenmpi-dev_3.0.1.real-1 libopenmpi3_3.0.1.real-1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpmix2_2.1.1~rc1-4 libpng16-16_1.6.34-1 libpsm-infinipath1_3.3+20.604758e7-5 libpthread-stubs0-dev_0.3-4 libquadmath0_8-20180425-1 librdmacm1_17.1-2 libseccomp2_2.3.3-1 libselinux1_2.7-2+b2 libsemanage-common_2.7-2 libsemanage1_2.7-2+b2 libsensors4_1:3.4.0-4 libsepol1_2.7-1 libsigsegv2_2.12-2 libsmartcols1_2.31.1-0.5 libss2_1.44.1-2 libssl1.0.2_1.0.2o-1 libstdc++-7-dev_7.3.0-17 libstdc++6_8-20180425-1 libsystemd0_238-4 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2 libtinfo6_6.1+20180210-2 libtool_2.4.6-2.1 libtsan0_8-20180425-1 libubsan0_7.3.0-17 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.5 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libx11-xcb1_2:1.6.5-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13-1 libxcb-dri3-0_1.13-1 libxcb-glx0_1.13-1 libxcb-present0_1.13-1 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb-sync1_1.13-1 libxcb-xfixes0_1.13-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxcursor1_1:1.1.15-1 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxfixes3_1:5.0.3-1 libxft2_2.3.2-2 libxinerama1_2:1.1.3-1+b3 libxml2_2.9.4+dfsg1-6.1 libxrender1_1:0.9.10-1 libxshmfence1_1.3-1 libxxf86vm1_1:1.1.4-1+b2 libzstd1_1.3.4+dfsg-1 linux-libc-dev_4.15.17-1 login_1:4.5-1 m4_1.4.18-1 make_4.2.1-1 man-db_2.8.3-2 mawk_1.3.3-17+b3 mount_2.31.1-0.5 multiarch-support_2.27-3 ncurses-base_6.1+20180210-2 ncurses-bin_6.1+20180210-2 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_3.0.1.real-1 openmpi-common_3.0.1.real-1 openssh-client_1:7.7p1-2 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 po-debconf_1.0.20 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-relion-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-1 ucf_3.0038 util-linux_2.31.1-0.5 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 7 13:32:04 2017 UTC gpgv: using RSA key 346AFED983AF9C47DFE91AFBF81E368B9B26AB98 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./relion_1.4+dfsg-3.dsc dpkg-source: info: extracting relion in /<>/relion-1.4+dfsg dpkg-source: info: unpacking relion_1.4+dfsg.orig.tar.xz dpkg-source: info: unpacking relion_1.4+dfsg-3.debian.tar.xz dpkg-source: info: applying 0001-Fix-fltk-config-path-in-configure.patch dpkg-source: info: applying 0002-Add-ml_optimiser_mpi.cpp-length_fn_ctf-patch.patch dpkg-source: info: applying 0003-Add-enable-gui-flag-to-configure.patch dpkg-source: info: applying 0004-Fix-fltk-header-includes.patch dpkg-source: info: applying 0005-gcc-6.patch dpkg-source: info: applying 0006-correct-copy-overflow.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=unstable-amd64-sbuild-5c05f50f-85f2-4a48-aea0-1f157ddb5326 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package relion dpkg-buildpackage: info: source version 1.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Gert Wollny dpkg-source --before-build relion-1.4+dfsg dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from relion-1.4+dfsg/debian/source/options: --compression=xz fakeroot debian/rules clean Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh clean --parallel --with autoreconf dh_clean -O--parallel debian/rules build-arch Relion API Version = 1.4 Relion most recent (current) lib interface = 1 dh build-arch --parallel --with autoreconf dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:16: installing './compile' configure.ac:4: installing './missing' /usr/share/automake-1.15/am/ltlibrary.am: warning: 'librelion-@RELION_API_VERSION@.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.15/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' Makefile.am:44: while processing Libtool library 'librelion-@RELION_API_VERSION@.la' Makefile.am: installing './depcomp' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/relion-1.4+dfsg' Relion API Version = 1.4 Relion most recent (current) lib interface = 1 # We need to build 4 different versions for the 4 different binary # packages. This is necessary because unfortunately the binaries work # only with the exact same librelion they were built with. # First no MPI, no GUI (for relion-bin) ... dh_auto_configure -- --libdir=\${prefix}/lib/x86_64-linux-gnu --disable-gui ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=\${prefix}/lib/x86_64-linux-gnu --disable-gui configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for fftw3.h... yes checking for main in -lfftw3... yes checking for fftw_plan_with_nthreads in -lfftw3_threads... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating relion-1.4.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make -j8; make install prefix=/<>/relion-1.4+dfsg/debian/tmp/simple/usr make[2]: Entering directory '/<>/relion-1.4+dfsg' make all-am make[3]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/args.lo src/args.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/assembly.lo src/assembly.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/backprojector.lo src/backprojector.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/complex.lo src/complex.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctf.lo src/ctf.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ctffind_runner.lo src/ctffind_runner.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error.lo src/error.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -fPIC -DPIC -o src/.libs/assembly.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -fPIC -DPIC -o src/.libs/complex.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -fPIC -DPIC -o src/.libs/ctf.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctffind_runner.cpp -fPIC -DPIC -o src/.libs/ctffind_runner.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/backprojector.cpp -fPIC -DPIC -o src/.libs/backprojector.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -fPIC -DPIC -o src/.libs/args.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -fPIC -DPIC -o src/.libs/error.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/error.cpp -o src/error.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/complex.cpp -o src/complex.o >/dev/null 2>&1 src/args.cpp:104:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/backprojector.cpp:27: In file included from ./src/backprojector.h:31: In file included from ./src/projector.h:23: In file included from ./src/fftw.h:50: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/ctf.cpp:45: In file included from ./src/ctf.h:48: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/assembly.cpp:356:33: warning: format specifies type 'int' but the argument has type 'long' [-Wformat] atomnum, molecules[imol].residues[ires].atoms[iatom].name.c_str(), molecules[imol].residues[ires].name.c_str(), ^~~~~~~ In file included from src/ctffind_runner.cpp:20: In file included from ./src/ctffind_runner.h:30: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/euler.lo src/euler.cpp In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) In file included from src/backprojector.cpp ~~~~ ^ ~ :27: In file included from ./src/backprojector.h:31: In file included from ./src/projector.h:25: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) :1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -fPIC -DPIC -o src/.libs/euler.o In file included from src/ctffind_runner.cpp:20: In file included from ./src/ctffind_runner.h:30: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/exp_model.lo src/exp_model.cpp src/ctffind_runner.cpp:237:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system ( fn_cmnd.c_str() ); ^~~~~~ ~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/exp_model.cpp -fPIC -DPIC -o src/.libs/exp_model.o ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/autopicker.cpp:121:9: note: in instantiation of member function 'Image::read' requested here Iref.read(fn_img); ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 3 warnings and 1 error generated. In file included from src/ctffind_runner.cpp:20: In file included from ./src/ctffind_runner.h:30: ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/ctffind_runner.cpp:206:15: note: in instantiation of member function 'Image::read' requested here I.read(fn_mic); ^ ./src/image.h:1047:25make[3]: *** [Makefile:1243: src/backprojector.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... : note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 5 warnings and 1 error generated. make[3]: *** [Makefile:1243: src/ctffind_runner.lo] Error 1 4 warnings and 1 error generated. make[3]: *** [Makefile:1243: src/autopicker.lo] Error 1 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/ctf.cpp -o src/ctf.o >/dev/null 2>&1 In file included from src/euler.cpp:48: In file included from ./src/euler.h:48: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/exp_model.cpp:20: In file included from ./src/exp_model.h:24: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/exp_model.cpp:20: In file included from ./src/exp_model.h:24: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 2 warnings generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/euler.cpp -o src/euler.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/args.cpp -o src/args.o >/dev/null 2>&1 ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/exp_model.cpp:673:7: note: in instantiation of member function 'Image::read' requested here img.read(fn_exp, false); // false means skip data, only read header ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 4 warnings and 1 error generated. make[3]: *** [Makefile:1243: src/exp_model.lo] Error 1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/assembly.cpp -o src/assembly.o >/dev/null 2>&1 make[3]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: *** [Makefile:697: all] Error 2 make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[2]: Entering directory '/<>/relion-1.4+dfsg' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/autopicker.lo src/autopicker.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/relion-1.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c src/autopicker.cpp -fPIC -DPIC -o src/.libs/autopicker.o In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: In file included from ./src/image.h:60: ./src/multidim_array.h:3888:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast("(gnuplot PPP") + fn_tmp + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/multidim_array.h:3906:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] system((static_cast< std::string >("xmipp_edit -i " + nam + ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/autopicker.cpp:20: In file included from ./src/autopicker.h:10: ./src/image.h:757:23: error: ordered comparison between pointer and zero ('char *' and 'int') if ( page > 0 ) ~~~~ ^ ~ ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == ./src/image.h:1047:25: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (_exists = exists(fileName)) ~~~~~~~~^~~~~~~~~~~~~~~~~~ ./src/image.h:255:32: note: in instantiation of member function 'Image::openFile' requested here fImageHandler* hFile = openFile(name); ^ src/autopicker.cpp:121:9: note: in instantiation of member function 'Image::read' requested here Iref.read(fn_img); ^ ./src/image.h:1047:25: note: place parentheses around the assignment to silence this warning if (_exists = exists(fileName)) ^ ( ) ./src/image.h:1047:25: note: use '==' to turn this assignment into an equality comparison if (_exists = exists(fileName)) ^ == 4 warnings and 1 error generated. make[2]: *** [Makefile:1243: src/autopicker.lo] Error 1 make[2]: Leaving directory '/<>/relion-1.4+dfsg' make[1]: *** [debian/rules:47: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/relion-1.4+dfsg' make: *** [debian/rules:37: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2018-05-02T12:37:24Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 10676 Build-Time: 17 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 13 Job: relion_1.4+dfsg-3 Machine Architecture: amd64 Package: relion Package-Time: 46 Source-Version: 1.4+dfsg-3 Space: 10676 Status: attempted Version: 1.4+dfsg-3 -------------------------------------------------------------------------------- Finished at 2018-05-02T12:37:24Z Build needed 00:00:46, 10676k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 46.304193048s DC-Time-Estimation: 46.304193048 versus expected 454 (r/m: 8.804727609211827 ; m: 46.304193048)