DC-Build-Header: dune-pdelab 2.6~20180302-1 / 2019-01-09 19:40:21 +0000 DC-Task: type:rebuild-binarch-only source:dune-pdelab version:2.6~20180302-1 chroot:unstable esttime:1757 logfile:/tmp/dune-pdelab_2.6~20180302-1_unstable_clang7.log modes:clang7:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang7 dune-pdelab_2.6~20180302-1' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-10-121.eu-central-1.compute.internal +==============================================================================+ | dune-pdelab 2.6~20180302-1 (amd64) Wed, 09 Jan 2019 19:40:21 +0000 | +==============================================================================+ Package: dune-pdelab Version: 2.6~20180302-1 Source Version: 2.6~20180302-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-e25d9436-a909-4ea1-a908-5d0fda1c5436' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang7 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=7 + echo 'Install of clang-7' Install of clang-7 + apt-get update Get:1 http://127.0.0.1:9999/debian sid InRelease [238 kB] Get:2 http://127.0.0.1:9999/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:4 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:6 http://127.0.0.1:9999/debian sid/main Translation-en [6275 kB] Fetched 6633 kB in 2s (2681 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-7 libomp-7-dev libobjc-8-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-7-dev libclang1-7 libedit2 libgc1c2 libllvm7 libobjc4 libomp5-7 Suggested packages: clang-7-doc libomp-7-doc Recommended packages: llvm-7-dev python The following NEW packages will be installed: clang-7 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-7-dev libclang1-7 libedit2 libgc1c2 libllvm7 libobjc-8-dev libobjc4 libomp-7-dev libomp5-7 0 upgraded, 14 newly installed, 0 to remove and 5 not upgraded. Need to get 34.5 MB of archives. After this operation, 185 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libllvm7 amd64 1:7.0.1-4 [13.0 MB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libobjc4 amd64 8.2.0-14 [50.4 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 libobjc-8-dev amd64 8.2.0-14 [225 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libc6-i386 amd64 2.28-4 [2873 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 lib32gcc1 amd64 1:8.2.0-14 [47.9 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 lib32stdc++6 amd64 8.2.0-14 [406 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 libclang-common-7-dev amd64 1:7.0.1-4 [3155 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 libclang1-7 amd64 1:7.0.1-4 [5991 kB] Get:12 http://127.0.0.1:9999/debian sid/main amd64 clang-7 amd64 1:7.0.1-4 [7887 kB] Get:13 http://127.0.0.1:9999/debian sid/main amd64 libomp5-7 amd64 1:7.0.1-4 [318 kB] Get:14 http://127.0.0.1:9999/debian sid/main amd64 libomp-7-dev amd64 1:7.0.1-4 [57.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.5 MB in 0s (117 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11802 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../02-libllvm7_1%3a7.0.1-4_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-4) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../03-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../04-libobjc4_8.2.0-14_amd64.deb ... Unpacking libobjc4:amd64 (8.2.0-14) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../05-libobjc-8-dev_8.2.0-14_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.2.0-14) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../06-libc6-i386_2.28-4_amd64.deb ... Unpacking libc6-i386 (2.28-4) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../07-lib32gcc1_1%3a8.2.0-14_amd64.deb ... Unpacking lib32gcc1 (1:8.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../08-lib32stdc++6_8.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (8.2.0-14) ... Selecting previously unselected package libclang-common-7-dev. Preparing to unpack .../09-libclang-common-7-dev_1%3a7.0.1-4_amd64.deb ... Unpacking libclang-common-7-dev (1:7.0.1-4) ... Selecting previously unselected package libclang1-7:amd64. Preparing to unpack .../10-libclang1-7_1%3a7.0.1-4_amd64.deb ... Unpacking libclang1-7:amd64 (1:7.0.1-4) ... Selecting previously unselected package clang-7. Preparing to unpack .../11-clang-7_1%3a7.0.1-4_amd64.deb ... Unpacking clang-7 (1:7.0.1-4) ... Selecting previously unselected package libomp5-7:amd64. Preparing to unpack .../12-libomp5-7_1%3a7.0.1-4_amd64.deb ... Unpacking libomp5-7:amd64 (1:7.0.1-4) ... Selecting previously unselected package libomp-7-dev. Preparing to unpack .../13-libomp-7-dev_1%3a7.0.1-4_amd64.deb ... Unpacking libomp-7-dev (1:7.0.1-4) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libc6-i386 (2.28-4) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libomp5-7:amd64 (1:7.0.1-4) ... Processing triggers for libc-bin (2.28-4) ... Setting up libomp-7-dev (1:7.0.1-4) ... Setting up lib32gcc1 (1:8.2.0-14) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libobjc4:amd64 (8.2.0-14) ... Setting up libobjc-8-dev:amd64 (8.2.0-14) ... Setting up libllvm7:amd64 (1:7.0.1-4) ... Setting up libclang1-7:amd64 (1:7.0.1-4) ... Setting up lib32stdc++6 (8.2.0-14) ... Setting up libclang-common-7-dev (1:7.0.1-4) ... Setting up clang-7 (1:7.0.1-4) ... Processing triggers for libc-bin (2.28-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-7 g++-4.6 + ln -s clang-7 gcc-4.6 + ln -s clang-7 cpp-4.6 + ln -s clang-7 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-7 g++-4.7 + ln -s clang-7 gcc-4.7 + ln -s clang-7 cpp-4.7 + ln -s clang-7 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-7 g++-4.8 + ln -s clang-7 gcc-4.8 + ln -s clang-7 cpp-4.8 + ln -s clang-7 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-7 g++-4.9 + ln -s clang-7 gcc-4.9 + ln -s clang-7 cpp-4.9 + ln -s clang-7 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-7 g++-5 + ln -s clang-7 gcc-5 + ln -s clang-7 cpp-5 + ln -s clang-7 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-7 g++-6 + ln -s clang-7 gcc-6 + ln -s clang-7 cpp-6 + ln -s clang-7 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-7 g++-7 + ln -s clang-7 gcc-7 + ln -s clang-7 cpp-7 + ln -s clang-7 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-7 g++-8 + ln -s clang-7 gcc-8 + ln -s clang-7 cpp-8 + ln -s clang-7 gcc + echo 'gcc-8 hold' + dpkg --set-selections + echo 'g++-8 hold' + dpkg --set-selections + cd - /build/dune-pdelab-ECEVXb + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang7'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libmpfr6 libpam-modules libpam-modules-bin libpam-runtime libpam0g 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1519 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libpam0g amd64 1.1.8-4 [124 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules-bin amd64 1.1.8-4 [106 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules amd64 1.1.8-4 [305 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libpam-runtime all 1.1.8-4 [211 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [773 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1519 kB in 0s (27.8 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.1.8-4_all.deb ... Unpacking libpam-runtime (1.1.8-4) over (1.1.8-3.8) ... Setting up libpam-runtime (1.1.8-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../libmpfr6_4.0.2~rc1-1_amd64.deb ... Unpacking libmpfr6:amd64 (4.0.2~rc1-1) over (4.0.1-2) ... Setting up libmpfr6:amd64 (4.0.2~rc1-1) ... Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'dune-pdelab' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/dune-pdelab.git Please use: git clone https://salsa.debian.org/science-team/dune-pdelab.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 536 kB of source archives. Get:1 http://127.0.0.1:9999/debian sid/main dune-pdelab 2.6~20180302-1 (dsc) [2596 B] Get:2 http://127.0.0.1:9999/debian sid/main dune-pdelab 2.6~20180302-1 (tar) [529 kB] Get:3 http://127.0.0.1:9999/debian sid/main dune-pdelab 2.6~20180302-1 (diff) [5276 B] Fetched 536 kB in 0s (2560 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/dune-pdelab-ECEVXb/dune-pdelab-2.6~20180302' with '<>' I: NOTICE: Log filtering will replace 'build/dune-pdelab-ECEVXb' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HzQKQB/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-HzQKQB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HzQKQB/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-HzQKQB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HzQKQB/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-HzQKQB/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HzQKQB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), cmake, gfortran, mpi-default-bin, mpi-default-dev, pkg-config, python3, libdune-common-dev (>= 2.6.0), libdune-functions-dev (>= 2.6~), libdune-grid-dev (>= 2.6.0), libdune-istl-dev (>= 2.6.0), libdune-localfunctions-dev (>= 2.6.0), libdune-typetree-dev (>= 2.6~), libeigen3-dev, libalberta2-dev (>= 2.0.1-5), libgmp-dev, libsuperlu-dev | libsuperlu3-dev Filtered Build-Depends: debhelper (>= 9), cmake, gfortran, mpi-default-bin, mpi-default-dev, pkg-config, python3, libdune-common-dev (>= 2.6.0), libdune-functions-dev (>= 2.6~), libdune-grid-dev (>= 2.6.0), libdune-istl-dev (>= 2.6.0), libdune-localfunctions-dev (>= 2.6.0), libdune-typetree-dev (>= 2.6~), libeigen3-dev, libalberta2-dev (>= 2.0.1-5), libgmp-dev, libsuperlu-dev dpkg-deb: building package 'sbuild-build-depends-dune-pdelab-dummy' in '/<>/resolver-HzQKQB/apt_archive/sbuild-build-depends-dune-pdelab-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dune-pdelab-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-HzQKQB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HzQKQB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-HzQKQB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HzQKQB/apt_archive ./ Sources [629 B] Get:5 copy:/<>/resolver-HzQKQB/apt_archive ./ Packages [707 B] Fetched 2299 B in 0s (0 B/s) Reading package lists... Reading package lists... Install dune-pdelab build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-8 groff-base ibverbs-providers intltool-debian libalberta-dev libalberta2-dev libalberta4 libamd2 libarchive-zip-perl libarchive13 libblas-dev libblas3 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcurl4 libcxsparse3 libdune-common-dev libdune-functions-dev libdune-geometry-dev libdune-grid-dev libdune-istl-dev libdune-localfunctions-dev libdune-typetree-dev libdune-uggrid-dev libeigen3-dev libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfile-stripnondeterminism-perl libgfortran-8-dev libgfortran5 libglib2.0-0 libgmp-dev libgmpxx4ldbl libgraphblas2 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libklu1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libldl2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps7 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librbio2 librdmacm1 libreadline7 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspqr2 libsqlite3-0 libssh2-1 libssl1.1 libsuitesparse-dev libsuitesparseconfig5 libsuperlu-dev libsuperlu5 libtool libuchardet0 libumfpack5 libuv1 libxml2 lsb-base m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf procps python python-minimal python-pyparsing python2 python2-minimal python2.7 python2.7-minimal python3 python3-minimal python3.7 python3.7-minimal readline-common sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff libalberta-dbg lrzip liblapack-doc libdune-common-doc libdune-functions-doc libdune-grid-doc libdune-istl-doc libdune-localfunctions-doc libdune-typetree-doc libeigen3-doc libmpfrc++-dev gmp-doc libgmp10-doc libmpfr-dev krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils libsuperlu-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk python-pyparsing-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.7-venv python3.7-doc readline-doc Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev publicsuffix libsasl2-modules xauth libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-8 groff-base ibverbs-providers intltool-debian libalberta-dev libalberta2-dev libalberta4 libamd2 libarchive-zip-perl libarchive13 libblas-dev libblas3 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcurl4 libcxsparse3 libdune-common-dev libdune-functions-dev libdune-geometry-dev libdune-grid-dev libdune-istl-dev libdune-localfunctions-dev libdune-typetree-dev libdune-uggrid-dev libeigen3-dev libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libexpat1 libfabric1 libfile-stripnondeterminism-perl libgfortran-8-dev libgfortran5 libglib2.0-0 libgmp-dev libgmpxx4ldbl libgraphblas2 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libklu1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libldl2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libmetis5 libmongoose2 libmpdec2 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps7 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib librbio2 librdmacm1 libreadline7 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspqr2 libsqlite3-0 libssh2-1 libssl1.1 libsuitesparse-dev libsuitesparseconfig5 libsuperlu-dev libsuperlu5 libtool libuchardet0 libumfpack5 libuv1 libxml2 lsb-base m4 man-db mime-support mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config po-debconf procps python python-minimal python-pyparsing python2 python2-minimal python2.7 python2.7-minimal python3 python3-minimal python3.7 python3.7-minimal readline-common sbuild-build-depends-dune-pdelab-dummy sensible-utils 0 upgraded, 154 newly installed, 0 to remove and 0 not upgraded. Need to get 70.1 MB of archives. After this operation, 331 MB of additional disk space will be used. Get:1 copy:/<>/resolver-HzQKQB/apt_archive ./ sbuild-build-depends-dune-pdelab-dummy 0.invalid.0 [1000 B] Get:2 http://127.0.0.1:9999/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libpipeline1 amd64 1.5.0-2 [29.5 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7-minimal amd64 2.7.15-5 [394 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 python2.7-minimal amd64 2.7.15-5 [1365 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 python2-minimal amd64 2.7.15-3 [41.3 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 python-minimal amd64 2.7.15-3 [20.9 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 mime-support all 3.61 [37.1 kB] Get:12 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amd64 openssh-client amd64 1:7.9p1-4 [797 kB] Get:46 http://127.0.0.1:9999/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:47 http://127.0.0.1:9999/debian sid/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:48 http://127.0.0.1:9999/debian sid/main amd64 autoconf all 2.69-11 [341 kB] Get:49 http://127.0.0.1:9999/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:50 http://127.0.0.1:9999/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:51 http://127.0.0.1:9999/debian sid/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:52 http://127.0.0.1:9999/debian sid/main amd64 cmake-data all 3.13.2-1 [1476 kB] Get:53 http://127.0.0.1:9999/debian sid/main amd64 libicu63 amd64 63.1-5 [8293 kB] Get:54 http://127.0.0.1:9999/debian sid/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:55 http://127.0.0.1:9999/debian sid/main amd64 libarchive13 amd64 3.3.3-3 [313 kB] Get:56 http://127.0.0.1:9999/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27~rc8-1 [68.4 kB] Get:57 http://127.0.0.1:9999/debian sid/main amd64 libsasl2-2 amd64 2.1.27~rc8-1 [105 kB] Get:58 http://127.0.0.1:9999/debian sid/main amd64 libldap-common all 2.4.47+dfsg-1 [88.8 kB] Get:59 http://127.0.0.1:9999/debian sid/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-1 [224 kB] Get:60 http://127.0.0.1:9999/debian sid/main amd64 libnghttp2-14 amd64 1.35.1-1+b1 [82.4 kB] Get:61 http://127.0.0.1:9999/debian sid/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:62 http://127.0.0.1:9999/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:63 http://127.0.0.1:9999/debian sid/main amd64 libssh2-1 amd64 1.8.0-2 [138 kB] Get:64 http://127.0.0.1:9999/debian sid/main amd64 libcurl4 amd64 7.62.0-1 [324 kB] Get:65 http://127.0.0.1:9999/debian sid/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:66 http://127.0.0.1:9999/debian sid/main amd64 librhash0 amd64 1.3.7-1 [104 kB] Get:67 http://127.0.0.1:9999/debian sid/main amd64 libuv1 amd64 1.24.0-1 [109 kB] Get:68 http://127.0.0.1:9999/debian sid/main amd64 cmake amd64 3.13.2-1 [3485 kB] Get:69 http://127.0.0.1:9999/debian sid/main amd64 libtool all 2.4.6-6 [547 kB] Get:70 http://127.0.0.1:9999/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:71 http://127.0.0.1:9999/debian sid/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:72 http://127.0.0.1:9999/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB] Get:73 http://127.0.0.1:9999/debian sid/main amd64 dh-strip-nondeterminism all 1.0.0-1 [12.5 kB] Get:74 http://127.0.0.1:9999/debian sid/main amd64 libelf1 amd64 0.175-2 [160 kB] Get:75 http://127.0.0.1:9999/debian sid/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:76 http://127.0.0.1:9999/debian sid/main amd64 libglib2.0-0 amd64 2.58.2-3 [1257 kB] Get:77 http://127.0.0.1:9999/debian sid/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:78 http://127.0.0.1:9999/debian sid/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:79 http://127.0.0.1:9999/debian sid/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:80 http://127.0.0.1:9999/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:81 http://127.0.0.1:9999/debian sid/main amd64 debhelper all 12 [1002 kB] Get:82 http://127.0.0.1:9999/debian sid/main amd64 libgfortran5 amd64 8.2.0-14 [581 kB] Get:83 http://127.0.0.1:9999/debian sid/main amd64 libgfortran-8-dev amd64 8.2.0-14 [616 kB] Get:84 http://127.0.0.1:9999/debian sid/main amd64 gfortran-8 amd64 8.2.0-14 [7607 kB] Get:85 http://127.0.0.1:9999/debian sid/main amd64 gfortran amd64 4:8.2.0-2 [1432 B] Get:86 http://127.0.0.1:9999/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1 [63.0 kB] Get:87 http://127.0.0.1:9999/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1 [162 kB] Get:88 http://127.0.0.1:9999/debian sid/main amd64 libibverbs1 amd64 21.0-1 [50.8 kB] Get:89 http://127.0.0.1:9999/debian sid/main amd64 ibverbs-providers amd64 21.0-1 [186 kB] Get:90 http://127.0.0.1:9999/debian sid/main amd64 libalberta4 amd64 3.0.1-1+b2 [805 kB] Get:91 http://127.0.0.1:9999/debian sid/main amd64 libalberta-dev amd64 3.0.1-1+b2 [165 kB] Get:92 http://127.0.0.1:9999/debian sid/main amd64 libalberta2-dev amd64 3.0.1-1+b2 [92.1 kB] Get:93 http://127.0.0.1:9999/debian sid/main amd64 libsuitesparseconfig5 amd64 1:5.4.0+dfsg-1 [20.9 kB] Get:94 http://127.0.0.1:9999/debian sid/main amd64 libamd2 amd64 1:5.4.0+dfsg-1 [33.4 kB] Get:95 http://127.0.0.1:9999/debian sid/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:96 http://127.0.0.1:9999/debian sid/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get:97 http://127.0.0.1:9999/debian sid/main amd64 libbtf1 amd64 1:5.4.0+dfsg-1 [22.7 kB] Get:98 http://127.0.0.1:9999/debian sid/main amd64 libcamd2 amd64 1:5.4.0+dfsg-1 [35.0 kB] Get:99 http://127.0.0.1:9999/debian sid/main amd64 libccolamd2 amd64 1:5.4.0+dfsg-1 [36.4 kB] Get:100 http://127.0.0.1:9999/debian sid/main amd64 libcolamd2 amd64 1:5.4.0+dfsg-1 [30.3 kB] Get:101 http://127.0.0.1:9999/debian sid/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:102 http://127.0.0.1:9999/debian sid/main amd64 libmetis5 amd64 5.1.0.dfsg-5+b2 [175 kB] Get:103 http://127.0.0.1:9999/debian sid/main amd64 libcholmod3 amd64 1:5.4.0+dfsg-1 [324 kB] Get:104 http://127.0.0.1:9999/debian sid/main amd64 libcxsparse3 amd64 1:5.4.0+dfsg-1 [75.7 kB] Get:105 http://127.0.0.1:9999/debian sid/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:106 http://127.0.0.1:9999/debian sid/main amd64 python-pyparsing all 2.2.0+dfsg1-2 [89.5 kB] Get:107 http://127.0.0.1:9999/debian sid/main amd64 libdune-common-dev amd64 2.6.0-3 [304 kB] Get:108 http://127.0.0.1:9999/debian sid/main amd64 libdune-geometry-dev amd64 2.6.0-1 [283 kB] Get:109 http://127.0.0.1:9999/debian sid/main amd64 libdune-localfunctions-dev all 2.6.0-1 [108 kB] Get:110 http://127.0.0.1:9999/debian sid/main amd64 libevent-2.1-6 amd64 2.1.8-stable-4 [177 kB] Get:111 http://127.0.0.1:9999/debian sid/main amd64 libevent-core-2.1-6 amd64 2.1.8-stable-4 [129 kB] Get:112 http://127.0.0.1:9999/debian sid/main amd64 libevent-pthreads-2.1-6 amd64 2.1.8-stable-4 [47.9 kB] Get:113 http://127.0.0.1:9999/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6 [168 kB] Get:114 http://127.0.0.1:9999/debian sid/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get:115 http://127.0.0.1:9999/debian sid/main amd64 libpsm2-2 amd64 11.2.68-4 [177 kB] Get:116 http://127.0.0.1:9999/debian sid/main amd64 librdmacm1 amd64 21.0-1 [65.0 kB] Get:117 http://127.0.0.1:9999/debian sid/main amd64 libfabric1 amd64 1.6.1-5 [392 kB] Get:118 http://127.0.0.1:9999/debian sid/main amd64 libltdl7 amd64 2.4.6-6 [390 kB] Get:119 http://127.0.0.1:9999/debian sid/main amd64 libhwloc5 amd64 1.11.12-1 [111 kB] Get:120 http://127.0.0.1:9999/debian sid/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:121 http://127.0.0.1:9999/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get:122 http://127.0.0.1:9999/debian sid/main amd64 libhwloc-plugins amd64 1.11.12-1 [17.3 kB] Get:123 http://127.0.0.1:9999/debian sid/main amd64 libpmix2 amd64 3.1.0~rc2-3 [421 kB] Get:124 http://127.0.0.1:9999/debian sid/main amd64 libopenmpi3 amd64 3.1.3-9 [2174 kB] Get:125 http://127.0.0.1:9999/debian sid/main amd64 libdune-uggrid-dev amd64 2.6.0-1+b1 [525 kB] Get:126 http://127.0.0.1:9999/debian sid/main amd64 libdune-grid-dev amd64 2.6.0-3 [1149 kB] Get:127 http://127.0.0.1:9999/debian sid/main amd64 libdune-typetree-dev all 2.6~20180215-1 [37.4 kB] Get:128 http://127.0.0.1:9999/debian sid/main amd64 libdune-functions-dev all 2.6~20180228-1 [58.0 kB] Get:129 http://127.0.0.1:9999/debian sid/main amd64 libgraphblas2 amd64 1:5.4.0+dfsg-1 [1664 kB] Get:130 http://127.0.0.1:9999/debian sid/main amd64 libklu1 amd64 1:5.4.0+dfsg-1 [85.3 kB] Get:131 http://127.0.0.1:9999/debian sid/main amd64 libldl2 amd64 1:5.4.0+dfsg-1 [22.1 kB] Get:132 http://127.0.0.1:9999/debian sid/main amd64 libmongoose2 amd64 1:5.4.0+dfsg-1 [44.7 kB] Get:133 http://127.0.0.1:9999/debian sid/main amd64 libumfpack5 amd64 1:5.4.0+dfsg-1 [243 kB] Get:134 http://127.0.0.1:9999/debian sid/main amd64 librbio2 amd64 1:5.4.0+dfsg-1 [37.8 kB] Get:135 http://127.0.0.1:9999/debian sid/main amd64 libspqr2 amd64 1:5.4.0+dfsg-1 [78.6 kB] Get:136 http://127.0.0.1:9999/debian sid/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get:137 http://127.0.0.1:9999/debian sid/main amd64 libsuitesparse-dev amd64 1:5.4.0+dfsg-1 [2448 kB] Get:138 http://127.0.0.1:9999/debian sid/main amd64 libsuperlu5 amd64 5.2.1+dfsg1-3 [164 kB] Get:139 http://127.0.0.1:9999/debian sid/main amd64 libsuperlu-dev amd64 5.2.1+dfsg1-3 [18.2 kB] Get:140 http://127.0.0.1:9999/debian sid/main amd64 libdune-istl-dev all 2.6.0-2 [185 kB] Get:141 http://127.0.0.1:9999/debian sid/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get:142 http://127.0.0.1:9999/debian sid/main amd64 libgmpxx4ldbl amd64 2:6.1.2+dfsg-4 [22.9 kB] Get:143 http://127.0.0.1:9999/debian sid/main amd64 libgmp-dev amd64 2:6.1.2+dfsg-4 [628 kB] Get:144 http://127.0.0.1:9999/debian sid/main amd64 libnuma-dev amd64 2.0.12-1 [39.2 kB] Get:145 http://127.0.0.1:9999/debian sid/main amd64 libltdl-dev amd64 2.4.6-6 [162 kB] Get:146 http://127.0.0.1:9999/debian sid/main amd64 libhwloc-dev amd64 1.11.12-1 [175 kB] Get:147 http://127.0.0.1:9999/debian sid/main amd64 libnl-3-dev amd64 3.4.0-1 [102 kB] Get:148 http://127.0.0.1:9999/debian sid/main amd64 libnl-route-3-dev amd64 3.4.0-1 [177 kB] Get:149 http://127.0.0.1:9999/debian sid/main amd64 libibverbs-dev amd64 21.0-1 [355 kB] Get:150 http://127.0.0.1:9999/debian sid/main amd64 openmpi-common all 3.1.3-9 [165 kB] Get:151 http://127.0.0.1:9999/debian sid/main amd64 openmpi-bin amd64 3.1.3-9 [200 kB] Get:152 http://127.0.0.1:9999/debian sid/main amd64 libopenmpi-dev amd64 3.1.3-9 [974 kB] Get:153 http://127.0.0.1:9999/debian sid/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get:154 http://127.0.0.1:9999/debian sid/main amd64 mpi-default-dev amd64 1.13 [5476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.1 MB in 2s (31.4 MB/s) Selecting previously unselected package bsdmainutils. 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Setting up libgraphblas2:amd64 (1:5.4.0+dfsg-1) ... Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up lsb-base (10.2018112800) ... Setting up librhash0:amd64 (1.3.7-1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up pkg-config (0.29-4+b1) ... Setting up sensible-utils (0.0.12) ... Setting up libssh2-1:amd64 (1.8.0-2) ... Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4) ... Setting up openmpi-common (3.1.3-9) ... Processing triggers for libc-bin (2.28-4) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libsuitesparseconfig5:amd64 (1:5.4.0+dfsg-1) ... Setting up libmetis5:amd64 (5.1.0.dfsg-5+b2) ... Setting up libltdl7:amd64 (2.4.6-6) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcolamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libccolamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libnuma-dev:amd64 (2.0.12-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-2) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgmpxx4ldbl:amd64 (2:6.1.2+dfsg-4) ... Setting up libnl-3-200:amd64 (3.4.0-1) ... Setting up libmongoose2:amd64 (1:5.4.0+dfsg-1) ... Setting up libgfortran5:amd64 (8.2.0-14) ... Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up libalberta4:amd64 (3.0.1-1+b2) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-5) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libbtf1:amd64 (1:5.4.0+dfsg-1) ... Setting up libldl2:amd64 (1:5.4.0+dfsg-1) ... Setting up libgmp-dev:amd64 (2:6.1.2+dfsg-4) ... Setting up libcxsparse3:amd64 (1:5.4.0+dfsg-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.2-1) ... Setting up libpsm2-2 (11.2.68-4) ... Setting up gettext (0.19.8.1-9) ... Setting up libarchive13:amd64 (3.3.3-3) ... Setting up libeigen3-dev (3.3.7-1) ... Setting up groff-base (1.22.4-2) ... Setting up librbio2:amd64 (1:5.4.0+dfsg-1) ... Setting up libcamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libnl-3-dev:amd64 (3.4.0-1) ... Setting up python2.7 (2.7.15-5) ... Setting up libnl-route-3-200:amd64 (3.4.0-1) ... Setting up python3.7 (3.7.2-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libhwloc5:amd64 (1.11.12-1) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libhwloc-plugins:amd64 (1.11.12-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libamd2:amd64 (1:5.4.0+dfsg-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libgfortran-8-dev:amd64 (8.2.0-14) ... Setting up libalberta-dev:amd64 (3.0.1-1+b2) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:amd64 (3.7.1-3) ... Setting up libibverbs1:amd64 (21.0-1) ... Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up libltdl-dev:amd64 (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-3) ... Setting up libhwloc-dev:amd64 (1.11.12-1) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up gfortran-8 (8.2.0-14) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libklu1:amd64 (1:5.4.0+dfsg-1) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1) ... Setting up libpmix2:amd64 (3.1.0~rc2-3) ... Setting up librdmacm1:amd64 (21.0-1) ... Setting up libalberta2-dev:amd64 (3.0.1-1+b2) ... Setting up libsuperlu5:amd64 (5.2.1+dfsg1-3) ... Setting up python2 (2.7.15-3) ... Setting up libcholmod3:amd64 (1:5.4.0+dfsg-1) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up libsuperlu-dev:amd64 (5.2.1+dfsg1-3) ... Setting up ibverbs-providers:amd64 (21.0-1) ... Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libibverbs-dev:amd64 (21.0-1) ... Setting up python (2.7.15-3) ... Setting up libspqr2:amd64 (1:5.4.0+dfsg-1) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up gfortran (4:8.2.0-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libfabric1 (1.6.1-5) ... Setting up libumfpack5:amd64 (1:5.4.0+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up libsuitesparse-dev:amd64 (1:5.4.0+dfsg-1) ... Setting up openssh-client (1:7.9p1-4) ... Setting up libopenmpi3:amd64 (3.1.3-9) ... Setting up libsasl2-modules-db:amd64 (2.1.27~rc8-1) ... Setting up libsasl2-2:amd64 (2.1.27~rc8-1) ... Setting up openmpi-bin (3.1.3-9) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-1) ... Setting up mpi-default-bin (1.13) ... Setting up libopenmpi-dev:amd64 (3.1.3-9) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libcurl4:amd64 (7.62.0-1) ... Setting up mpi-default-dev (1.13) ... Setting up cmake (3.13.2-1) ... Setting up libdune-common-dev:amd64 (2.6.0-3) ... Setting up libdune-uggrid-dev:amd64 (2.6.0-1+b1) ... Setting up libdune-istl-dev (2.6.0-2) ... Setting up libdune-geometry-dev:amd64 (2.6.0-1) ... Setting up libdune-localfunctions-dev (2.6.0-1) ... Setting up libdune-typetree-dev (2.6~20180215-1) ... Setting up libdune-grid-dev:amd64 (2.6.0-3) ... Setting up libdune-functions-dev (2.6~20180228-1) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-dune-pdelab-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-14 gcc-8_8.2.0-14 libc6-dev_2.28-4 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 linux-libc-dev_4.19.13-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 clang-7_1:7.0.1-4 cmake_3.13.2-1 cmake-data_3.13.2-1 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-14 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6 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libpython3.7-stdlib_3.7.2-1 libquadmath0_8.2.0-14 librbio2_1:5.4.0+dfsg-1 librdmacm1_21.0-1 libreadline7_7.0-5 librhash0_1.3.7-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libspqr2_1:5.4.0+dfsg-1 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 libsuitesparse-dev_1:5.4.0+dfsg-1 libsuitesparseconfig5_1:5.4.0+dfsg-1 libsuperlu-dev_5.2.1+dfsg1-3 libsuperlu5_5.2.1+dfsg1-3 libsystemd0_240-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libtsan0_8.2.0-14 libubsan1_8.2.0-14 libuchardet0_0.0.6-3 libudev1_240-2 libumfpack5_1:5.4.0+dfsg-1 libunistring2_0.9.10-1 libuuid1_2.33-0.2 libuv1_1.24.0-1 libxml2_2.9.4+dfsg1-7+b3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.13-1 login_1:4.5-1.1 lsb-base_10.2018112800 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Apr 13 07:03:21 2018 UTC gpgv: using RSA key E9762343DA3C836A78CD254A6A63028F5A74E893 gpgv: issuer "ansgar@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dune-pdelab_2.6~20180302-1.dsc dpkg-source: info: extracting dune-pdelab in /<> dpkg-source: info: unpacking dune-pdelab_2.6~20180302.orig.tar.xz dpkg-source: info: unpacking dune-pdelab_2.6~20180302-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying increase-timeout.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-e25d9436-a909-4ea1-a908-5d0fda1c5436 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dune-pdelab dpkg-buildpackage: info: source version 2.6~20180302-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ansgar Burchardt dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --parallel --builddirectory=build dh_auto_clean -O--parallel -O--builddirectory=build dh_clean -O--parallel -O--builddirectory=build debian/rules binary-arch dh binary-arch --parallel --builddirectory=build dh_update_autotools_config -a -O--parallel -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DBUILD_SHARED_LIBS=1 cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=1 .. -- The C compiler identification is Clang 7.0.1 -- The CXX compiler identification is Clang 7.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Dependencies for dune-pdelab: dune-grid (>= 2.5);dune-localfunctions (>= 2.5);dune-istl (>= 2.5);dune-typetree (>= 2.5);dune-functions (>= 2.5) -- Suggestions for dune-pdelab: dune-alugrid -- Dependencies for dune-grid: dune-geometry (>= 2.6) -- Suggestions for dune-grid: dune-uggrid (>=2.6) -- Dependencies for dune-localfunctions: dune-geometry (>= 2.6) -- Dependencies for dune-istl: dune-common (>= 2.6) -- Dependencies for dune-typetree: dune-common (>= 2.6) -- Dependencies for dune-functions: dune-localfunctions (>= 2.5);dune-grid (>= 2.5);dune-typetree -- Suggestions for dune-functions: dune-istl -- Could NOT find dune-alugrid (missing: dune-alugrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Checking for module 'dune-alugrid ' -- No package 'dune-alugrid' found -- Dependencies for dune-localfunctions: dune-geometry (>= 2.6) -- Dependencies for dune-grid: dune-geometry (>= 2.6) -- Suggestions for dune-grid: dune-uggrid (>=2.6) -- Dependencies for dune-typetree: dune-common (>= 2.6) -- Dependencies for dune-geometry: dune-common (>= 2.6) -- Dependencies for dune-istl: dune-common (>= 2.6) -- Dependencies for dune-uggrid: dune-common -- Dependencies for dune-geometry: dune-common (>= 2.6) -- Dependencies for dune-uggrid: dune-common -- The Fortran compiler identification is GNU 8.2.0 -- Check for working Fortran compiler: /usr/bin/f95 -- Check for working Fortran compiler: /usr/bin/f95 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/f95 supports Fortran 90 -- Checking whether /usr/bin/f95 supports Fortran 90 -- yes -- Performing Test cxx_std_flag_17 -- Performing Test cxx_std_flag_17 - Success -- Performing Test compiler_supports_cxx17 -- Performing Test compiler_supports_cxx17 - Success -- Performing Test HAS_ATTRIBUTE_UNUSED -- Performing Test HAS_ATTRIBUTE_UNUSED - Success -- Performing Test HAS_ATTRIBUTE_DEPRECATED -- Performing Test HAS_ATTRIBUTE_DEPRECATED - Success -- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG -- Performing Test HAS_ATTRIBUTE_DEPRECATED_MSG - Success -- Performing Test HAVE_IS_INDEXABLE_SUPPORT -- Performing Test HAVE_IS_INDEXABLE_SUPPORT - Success -- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION -- Performing Test DUNE_HAVE_CXX_CLASS_TEMPLATE_ARGUMENT_DEDUCTION - Success -- Performing Test DUNE_HAVE_CXX_OPTIONAL -- Performing Test DUNE_HAVE_CXX_OPTIONAL - Success -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Check if compiler accepts -pthread -- Check if compiler accepts -pthread - yes -- Found Threads: TRUE -- Performing Test STDTHREAD_WORKS -- Performing Test STDTHREAD_WORKS - Success -- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR -- Performing Test DUNE_SUPPORTS_CXX_THROW_IN_CONSTEXPR - Success -- Looking for C++ include experimental/type_traits -- Looking for C++ include experimental/type_traits - found -- Looking for std::make_unique -- Looking for std::make_unique - found -- Looking for std::move> -- Looking for std::move> - found -- Looking for std::apply,std::tuple> -- Looking for std::apply,std::tuple> - found -- Looking for std::experimental::make_array -- Looking for std::experimental::make_array - found -- Looking for std::move> -- Looking for std::move> - found -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- Could NOT find LATEX (missing: LATEX_COMPILER) CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:84 (message): Need latex to create documentation! Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneMacros.cmake:729 (include) CMakeLists.txt:23 (dune_project) CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:88 (message): Need bibtex to create documentation! Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneMacros.cmake:729 (include) CMakeLists.txt:23 (dune_project) CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:92 (message): Need makeindex to create documentation! Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneMacros.cmake:729 (include) CMakeLists.txt:23 (dune_project) CMake Warning at /usr/share/dune/cmake/modules/DuneDoc.cmake:96 (message): Need imagemagick to create latex documentation! Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneMacros.cmake:729 (include) CMakeLists.txt:23 (dune_project) -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Searching for macro file 'DuneCommonMacros' for module 'dune-common'. -- Performing tests specific to dune-common from file /usr/share/dune/cmake/modules/DuneCommonMacros.cmake. CMake Warning (dev) at /usr/share/dune/cmake/modules/DuneStreams.cmake:18 (elseif): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "info" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneCommonMacros.cmake:10 (dune_set_minimal_debug_level) /usr/share/dune/cmake/modules/DuneMacros.cmake:583 (include) /usr/share/dune/cmake/modules/DuneMacros.cmake:735 (dune_process_dependency_macros) CMakeLists.txt:23 (dune_project) This warning is for project developers. Use -Wno-dev to suppress it. -- Set Minimal Debug Level to 4 -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Looking for C++ include gmpxx.h -- Looking for C++ include gmpxx.h - found -- Looking for __gmpz_abs in /usr/lib/x86_64-linux-gnu/libgmp.so -- Looking for __gmpz_abs in /usr/lib/x86_64-linux-gnu/libgmp.so - found -- Found GMP: /usr/include -- Looking for sys/mman.h -- Looking for sys/mman.h - found -- Performing Test HAVE_MPROTECT -- Performing Test HAVE_MPROTECT - Success -- Library dir: TBB_LIBRARY_DIR-NOTFOUND -- Performing Test TBB_COMPILE_TEST -- Performing Test TBB_COMPILE_TEST - Failed -- Could NOT find TBB (missing: TBB_INCLUDE_DIRS TBB_LIBRARIES TBB_COMPILE_TEST) -- Could NOT find Vc (missing: Vc_DIR) -- Found PythonInterp: /usr/bin/python (found version "2.7.15") -- Could NOT find PythonLibs (missing: PYTHON_LIBRARIES PYTHON_INCLUDE_DIRS) -- Failed to find the python package pip with interpreter /usr/bin/python. (missing: DUNE_PYTHON_pip_FOUND) -- Setting dune-common_INCLUDE_DIRS=/usr/include -- Setting dune-common_LIBRARIES=dunecommon -- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'. -- Performing tests specific to dune-uggrid from file /usr/share/dune/cmake/modules/DuneUggridMacros.cmake. -- Looking for rpc/rpc.h -- Looking for rpc/rpc.h - found -- Setting dune-uggrid_INCLUDE_DIRS=/usr/include -- Setting dune-uggrid_LIBRARIES=ugL;ugS2;ugS3 -- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'. -- No module specific tests perfomed for module 'dune-geometry' because macro file 'DuneGeometryMacros.cmake' not found in /<>/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules. -- Setting dune-geometry_INCLUDE_DIRS=/usr/include -- Setting dune-geometry_LIBRARIES=dunegeometry -- Searching for macro file 'DuneIstlMacros' for module 'dune-istl'. -- Performing tests specific to dune-istl from file /usr/share/dune/cmake/modules/DuneIstlMacros.cmake. -- Looking for metis.h -- Looking for metis.h - not found -- Could NOT find METIS (missing: METIS_INCLUDE_DIR METIS_LIBRARY HAVE_METIS_PARTGRAPHKWAY) -- Looking for parmetis.h -- Looking for parmetis.h - not found CMake Warning at /usr/share/dune/cmake/modules/FindParMETIS.cmake:82 (message): metis.h is missing, you have to copy it manually next to parmetis.h Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneIstlMacros.cmake:7 (find_package) /usr/share/dune/cmake/modules/DuneMacros.cmake:583 (include) /usr/share/dune/cmake/modules/DuneMacros.cmake:735 (dune_process_dependency_macros) CMakeLists.txt:23 (dune_project) -- Could NOT find ParMETIS (missing: PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY HAVE_PARMETIS) -- Performing Test SUPERLU_MIN_VERSION_4 -- Performing Test SUPERLU_MIN_VERSION_4 - Success -- Performing Test SUPERLU_MIN_VERSION_4_3 -- Performing Test SUPERLU_MIN_VERSION_4_3 - Success -- Performing Test SUPERLU_MIN_VERSION_5 -- Performing Test SUPERLU_MIN_VERSION_5 - Success CMake Warning (dev) at /usr/share/cmake-3.13/Modules/CheckIncludeFiles.cmake:110 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/libsuperlu.so;/usr/lib/x86_64-linux-gnu/libblas.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/dune/cmake/modules/FindSuperLU.cmake:131 (check_include_files) /usr/share/dune/cmake/modules/DuneIstlMacros.cmake:9 (find_package) /usr/share/dune/cmake/modules/DuneMacros.cmake:583 (include) /usr/share/dune/cmake/modules/DuneMacros.cmake:735 (dune_process_dependency_macros) CMakeLists.txt:23 (dune_project) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for include file slu_sdefs.h -- Looking for include file slu_sdefs.h - found -- Looking for include file slu_cdefs.h -- Looking for include file slu_cdefs.h - found -- Looking for include file slu_zdefs.h -- Looking for include file slu_zdefs.h - found -- Found SuperLU: TRUE CMake Deprecation Warning at /usr/share/cmake-3.13/Modules/FeatureSummary.cmake:671 (message): SET_PACKAGE_INFO is deprecated. Use SET_PACKAGE_PROPERTIES instead. Call Stack (most recent call first): /usr/share/dune/cmake/modules/FindSuperLU.cmake:171 (set_package_info) /usr/share/dune/cmake/modules/DuneIstlMacros.cmake:9 (find_package) /usr/share/dune/cmake/modules/DuneMacros.cmake:583 (include) /usr/share/dune/cmake/modules/DuneMacros.cmake:735 (dune_process_dependency_macros) CMakeLists.txt:23 (dune_project) -- Could NOT find ARPACK (missing: ARPACK_LIBRARY) -- Could NOT find ARPACKPP (missing: ARPACK_FOUND ARPACKPP_INCLUDE_DIR) -- Performing Test SUITESPARSE_MIN_VERSION_4_3 -- Performing Test SUITESPARSE_MIN_VERSION_4_3 - Success -- Found SuiteSparse: TRUE found components: LDL SPQR UMFPACK -- Setting dune-istl_INCLUDE_DIRS=/usr/include -- Searching for macro file 'DuneTypetreeMacros' for module 'dune-typetree'. -- Performing tests specific to dune-typetree from file /usr/share/dune/cmake/modules/DuneTypetreeMacros.cmake. -- Setting dune-typetree_INCLUDE_DIRS=/usr/include -- Searching for macro file 'DuneGridMacros' for module 'dune-grid'. -- Performing tests specific to dune-grid from file /usr/share/dune/cmake/modules/DuneGridMacros.cmake. -- Looking for mkstemp -- Looking for mkstemp - found -- Could NOT find METIS (missing: METIS_INCLUDE_DIR METIS_LIBRARY HAVE_METIS_PARTGRAPHKWAY) CMake Warning at /usr/share/dune/cmake/modules/FindParMETIS.cmake:82 (message): metis.h is missing, you have to copy it manually next to parmetis.h Call Stack (most recent call first): /usr/share/dune/cmake/modules/DuneGridMacros.cmake:15 (find_package) /usr/share/dune/cmake/modules/DuneMacros.cmake:583 (include) /usr/share/dune/cmake/modules/DuneMacros.cmake:735 (dune_process_dependency_macros) CMakeLists.txt:23 (dune_project) -- Could NOT find ParMETIS (missing: PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY HAVE_PARMETIS) -- Looking for include file alberta/alberta.h -- Looking for include file alberta/alberta.h - found -- Performing Test ALBERTA_IS_VERSION_3 -- Performing Test ALBERTA_IS_VERSION_3 - Success -- Looking for alberta_calloc in /usr/lib/x86_64-linux-gnu/libalberta_utilities.so -- Looking for alberta_calloc in /usr/lib/x86_64-linux-gnu/libalberta_utilities.so - found -- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_1d.so -- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_1d.so - found -- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_2d.so -- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_2d.so - found -- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_3d.so -- Looking for mesh_traverse in /usr/lib/x86_64-linux-gnu/libalberta_3d.so - found -- Found alberta libraries for dimensions 1;2;3 -- Checking for one of the modules 'psurface' -- Checking for module 'psurface' -- No package 'psurface' found -- Could NOT find psurface (missing: PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) -- Could NOT find AmiraMesh (missing: AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) -- Setting dune-grid_INCLUDE_DIRS=/usr/include -- Setting dune-grid_LIBRARIES=dunegrid;dunealbertagrid_1d;dunealbertagrid_2d;dunealbertagrid_3d -- Searching for macro file 'DuneLocalfunctionsMacros' for module 'dune-localfunctions'. -- No module specific tests perfomed for module 'dune-localfunctions' because macro file 'DuneLocalfunctionsMacros.cmake' not found in /<>/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules. -- Setting dune-localfunctions_INCLUDE_DIRS=/usr/include -- Searching for macro file 'DuneAlugridMacros' for module 'dune-alugrid'. -- No module specific tests perfomed for module 'dune-alugrid' because macro file 'DuneAlugridMacros.cmake' not found in /<>/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules;/usr/share/dune/cmake/modules. -- Searching for macro file 'DuneFunctionsMacros' for module 'dune-functions'. -- Performing tests specific to dune-functions from file /usr/share/dune/cmake/modules/DuneFunctionsMacros.cmake. -- Setting dune-functions_INCLUDE_DIRS=/usr/include -- Searching for macro file 'DunePdelabMacros' for module 'dune-pdelab'. -- Performing tests specific to dune-pdelab from file /<>/cmake/modules/DunePdelabMacros.cmake. -- PETSc could not be found. Be sure to set PETSC_DIR and PETSC_ARCH. (missing: PETSC_INCLUDES PETSC_LIBRARIES PETSC_EXECUTABLE_RUNS) -- Using scripts from /usr/share/dune/cmake/scripts for creating doxygen stuff. CMake Warning at /usr/share/dune/cmake/modules/AddAlbertaFlags.cmake:48 (message): Alberta dimension not set. Please set it, e.g. use add_dune_alberta_flags(GRIDDIM 2 ). Falling back to dimension 2. Call Stack (most recent call first): dune/pdelab/test/CMakeLists.txt:56 (add_dune_alberta_flags) CMake Warning at /usr/share/dune/cmake/modules/AddAlbertaFlags.cmake:48 (message): Alberta dimension not set. Please set it, e.g. use add_dune_alberta_flags(GRIDDIM 2 ). Falling back to dimension 2. Call Stack (most recent call first): dune/pdelab/test/CMakeLists.txt:60 (add_dune_alberta_flags) CMake Warning at /usr/share/dune/cmake/modules/AddAlbertaFlags.cmake:48 (message): Alberta dimension not set. Please set it, e.g. use add_dune_alberta_flags(GRIDDIM 2 ). Falling back to dimension 2. Call Stack (most recent call first): dune/pdelab/test/CMakeLists.txt:65 (add_dune_alberta_flags) CMake Warning at /usr/share/dune/cmake/modules/AddAlbertaFlags.cmake:48 (message): Alberta dimension not set. Please set it, e.g. use add_dune_alberta_flags(GRIDDIM 2 ). Falling back to dimension 2. Call Stack (most recent call first): dune/pdelab/test/CMakeLists.txt:71 (add_dune_alberta_flags) CMake Warning at /usr/share/dune/cmake/modules/AddAlbertaFlags.cmake:48 (message): Alberta dimension not set. Please set it, e.g. use add_dune_alberta_flags(GRIDDIM 2 ). Falling back to dimension 2. Call Stack (most recent call first): dune/pdelab/test/CMakeLists.txt:75 (add_dune_alberta_flags) -- Adding custom target for config.h generation -- The following OPTIONAL packages have been found: * dune-uggrid * MPI, Message Passing Interface library Parallel programming on multiple processors * PkgConfig, Unified interface for querying installed libraries To find Dune module dependencies * LAPACK, fast linear algebra routines * GMP, GNU multi-precision library including the C++ bindings GMPxx Mulity-precision quadrature rules, basis function evaluation etc. * PythonInterp * SuperLU, Direct linear solver library * Threads, Multi-threading library * SuiteSparse * Alberta * Eigen3 -- The following REQUIRED packages have been found: * dune-common * dune-grid * dune-localfunctions * dune-istl * dune-typetree * dune-functions * dune-geometry -- The following OPTIONAL packages have not been found: * dune-alugrid * LATEX, Type setting system To generate the documentation * Sphinx, Documentation generator, To generate the documentation from CMake and Python sources * Doxygen, Class documentation generator, To generate the class documentation from C++ sources * Inkscape, converts SVG images, To generate the documentation with LaTeX * TBB, Threading Building Blocks library Parallel programming on multi-core processors * Vc, C++ Vectorization library, For use of SIMD instructions * PythonLibs * ARPACK * ARPACKPP * METIS * ParMETIS * Psurface * AmiraMesh * PETSc -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' dh_auto_build -a -O--parallel -O--builddirectory=build cd build && make -j4 make[1]: Entering directory '/<>/build' /usr/bin/cmake -S"/<>" -B"/<>/build" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/<>/build/CMakeFiles" "/<>/build/CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build' make -f CMakeFiles/dunepdelab.dir/build.make CMakeFiles/dunepdelab.dir/depend make[3]: Entering directory '/<>/build' cd "/<>/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>" "/<>/build" "/<>/build" "/<>/build/CMakeFiles/dunepdelab.dir/DependInfo.cmake" --color= Scanning dependencies of target dunepdelab make[3]: Leaving directory '/<>/build' make -f CMakeFiles/dunepdelab.dir/build.make CMakeFiles/dunepdelab.dir/build make[3]: Entering directory '/<>/build' [ 0%] Building CXX object CMakeFiles/dunepdelab.dir/dune/pdelab/common/logtag.cc.o /usr/bin/c++ -DENABLE_EIGEN=1 -DENABLE_GMP=1 -DENABLE_MPI=1 -DENABLE_SUITESPARSE=1 -DENABLE_SUPERLU=1 -DENABLE_TBB=1 -DENABLE_UG=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX -DMPIPP_H -DMPI_NO_CPPBIND -DModelP -DUG_USE_NEW_DIMENSION_DEFINES -D_TBB_CPP0X -Ddunepdelab_EXPORTS -I"/<>/build" -I"/<>" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/eigen3 -I/usr/include/suitesparse -I/usr/include/superlu -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/dunepdelab.dir/dune/pdelab/common/logtag.cc.o -c "/<>/dune/pdelab/common/logtag.cc" [ 50%] Building CXX object CMakeFiles/dunepdelab.dir/dune/pdelab/common/clock.cc.o [ 50%] Building CXX object CMakeFiles/dunepdelab.dir/dune/pdelab/common/hostname.cc.o /usr/bin/c++ -DENABLE_EIGEN=1 -DENABLE_GMP=1 -DENABLE_MPI=1 -DENABLE_SUITESPARSE=1 -DENABLE_SUPERLU=1 -DENABLE_TBB=1 -DENABLE_UG=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX -DMPIPP_H -DMPI_NO_CPPBIND -DModelP -DUG_USE_NEW_DIMENSION_DEFINES -D_TBB_CPP0X -Ddunepdelab_EXPORTS -I"/<>/build" -I"/<>" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/eigen3 -I/usr/include/suitesparse -I/usr/include/superlu -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/dunepdelab.dir/dune/pdelab/common/hostname.cc.o -c "/<>/dune/pdelab/common/hostname.cc" /usr/bin/c++ -DENABLE_EIGEN=1 -DENABLE_GMP=1 -DENABLE_MPI=1 -DENABLE_SUITESPARSE=1 -DENABLE_SUPERLU=1 -DENABLE_TBB=1 -DENABLE_UG=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX -DMPIPP_H -DMPI_NO_CPPBIND -DModelP -DUG_USE_NEW_DIMENSION_DEFINES -D_TBB_CPP0X -Ddunepdelab_EXPORTS -I"/<>/build" -I"/<>" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/eigen3 -I/usr/include/suitesparse -I/usr/include/superlu -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/dunepdelab.dir/dune/pdelab/common/clock.cc.o -c "/<>/dune/pdelab/common/clock.cc" [100%] Linking 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/usr/lib/x86_64-linux-gnu/libdunecommon.so.2.6-git -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so -lalberta_3d -lalberta_2d -lalberta_1d -lalberta_utilities -lm -lltdl -lgmp -lgmpxx -llapack /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/bin/cmake -E cmake_symlink_library lib/libdunepdelab.so.2.5-dev lib/libdunepdelab.so.2.5-dev lib/libdunepdelab.so make[3]: Leaving directory '/<>/build' [100%] Built target dunepdelab make[2]: Leaving directory '/<>/build' /usr/bin/cmake -E cmake_progress_start "/<>/build/CMakeFiles" 0 make[1]: Leaving directory '/<>/build' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_build -- build_tests cd build && make -j4 build_tests make[2]: Entering directory '/<>/build' /usr/bin/cmake -S"/<>" -B"/<>/build" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 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-I/usr/include/superlu -I/usr/include/alberta -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/testranktransmission.dir/testranktransmission.cc.o -c "/<>/dune/pdelab/test/testranktransmission.cc" [ 4%] Building CXX object dune/pdelab/test/CMakeFiles/testnonoverlapping.dir/testnonoverlapping.cc.o [ 4%] Building CXX object dune/pdelab/test/CMakeFiles/testl2.dir/testl2.cc.o cd "/<>/build/dune/pdelab/test" && /usr/bin/c++ -DENABLE_EIGEN=1 -DENABLE_GMP=1 -DENABLE_MPI=1 -DENABLE_SUITESPARSE=1 -DENABLE_SUPERLU=1 -DENABLE_TBB=1 -DENABLE_UG=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX -DMPIPP_H -DMPI_NO_CPPBIND -DModelP -DUG_USE_NEW_DIMENSION_DEFINES -D_TBB_CPP0X -I"/<>/build" -I"/<>" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/eigen3 -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/alberta -std=c++17 -g -O2 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"/<>/build/dune/pdelab/test/fem" && /usr/bin/cmake -E cmake_link_script CMakeFiles/testp22dfem.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -pthread -rdynamic CMakeFiles/testp22dfem.dir/testfemwithgfs.cc.o -o testp22dfem -Wl,-rpath,"/usr/lib/x86_64-linux-gnu/openmpi/lib:/<>/build/lib" -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so ../../../../lib/libdunepdelab.so.2.5-dev -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libdunealbertagrid_3d.so.2.6-git -lalberta_3d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_2d.so.2.6-git -lalberta_2d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_1d.so.2.6-git -lalberta_1d -lalberta_utilities -lm -lltdl /usr/lib/x86_64-linux-gnu/libdunegrid.so.2.6-git /usr/lib/x86_64-linux-gnu/libdunegeometry.so.2.6-git /usr/lib/x86_64-linux-gnu/libugS3.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugS2.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugL.so.2.6.0 /usr/lib/x86_64-linux-gnu/libdunecommon.so.2.6-git -lgmp -lgmpxx -llapack -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[5]: Leaving directory '/<>/build' [ 4%] Built target testp22dfem make -f dune/pdelab/test/CMakeFiles/testadaptivity.dir/build.make dune/pdelab/test/CMakeFiles/testadaptivity.dir/depend make[5]: Entering directory '/<>/build' cd "/<>/build" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<>" "/<>/dune/pdelab/test" "/<>/build" "/<>/build/dune/pdelab/test" "/<>/build/dune/pdelab/test/CMakeFiles/testadaptivity.dir/DependInfo.cmake" --color= Scanning dependencies of target testadaptivity make[5]: Leaving directory '/<>/build' make -f dune/pdelab/test/CMakeFiles/testadaptivity.dir/build.make dune/pdelab/test/CMakeFiles/testadaptivity.dir/build make[5]: Entering directory '/<>/build' [ 5%] Building CXX object dune/pdelab/test/CMakeFiles/testadaptivity.dir/testadaptivity.cc.o cd "/<>/build/dune/pdelab/test" && /usr/bin/c++ -DENABLE_EIGEN=1 -DENABLE_GMP=1 -DENABLE_MPI=1 -DENABLE_SUITESPARSE=1 -DENABLE_SUPERLU=1 -DENABLE_TBB=1 -DENABLE_UG=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX -DMPIPP_H -DMPI_NO_CPPBIND -DModelP -DUG_USE_NEW_DIMENSION_DEFINES -D_TBB_CPP0X -I"/<>/build" -I"/<>" -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/eigen3 -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/alberta -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -o CMakeFiles/testadaptivity.dir/testadaptivity.cc.o -c "/<>/dune/pdelab/test/testadaptivity.cc" In file included from /<>/dune/pdelab/test/testl2.cc:8: In file included from /usr/include/dune/grid/yaspgrid/../yaspgrid.hh:24: In file included from /usr/include/dune/common/bigunsignedint.hh:13: In file included from /usr/include/dune/common/hash.hh:6: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/functional:61: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/unordered_map:46: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/bits/hashtable.h:37: In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/bits/node_handle.h:39: /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/optional:567:9: error: call to implicitly-deleted copy constructor of 'std::_Optional_payload >, YaspGeometry>, true, false, false>' : _Optional_payload(__engaged ? ^ ~~~~~~~~~~~ /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/optional:733:4: note: in instantiation of member function 'std::_Optional_payload >, YaspGeometry>, true, false, false>::_Optional_payload' requested here : _M_payload(__other._M_payload._M_engaged, ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/optional:985:11: note: in instantiation of member function 'std::_Optional_base >, YaspGeometry>, false, false>::_Optional_base' requested here class optional ^ /usr/include/dune/functions/gridfunctions/analyticgridviewfunction.hh:25:7: note: in implicit copy constructor for 'std::optional >, YaspGeometry> >' first required here class LocalAnalyticGridViewFunction; ^ /<>/dune/pdelab/function/localfunctionhelper.hh:45:7: note: in implicit copy constructor for 'Dune::Functions::Imp::LocalAnalyticGridViewFunction), Dune::GridView > > >, (lambda at /<>/dune/pdelab/test/testl2.cc:75:5), LocalDerivativeTraits::template Traits>' first required here F(f) ^ /<>/dune/pdelab/function/localfunction.hh:128:12: note: in instantiation of member function 'Dune::PDELab::Imp::LocalFunctionLeafNodeWrapper), Dune::GridView > > >, (lambda at /<>/dune/pdelab/test/testl2.cc:75:5), LocalDerivativeTraits::template Traits> >::LocalFunctionLeafNodeWrapper' requested here return Imp::LocalFunctionLeafNodeWrapper< decltype(localFunction(f)) >(localFunction(f)); ^ /<>/dune/pdelab/gridfunctionspace/interpolate.hh:215:17: note: in instantiation of function template specialization 'Dune::PDELab::makeLocalFunctionTree), Dune::GridView > > >, (lambda at /<>/dune/pdelab/test/testl2.cc:75:5), DefaultDerivativeTraits>, Dune::GridView > > >, 0>' requested here auto lf = makeLocalFunctionTree(f, gfs.gridView()); ^ /<>/dune/pdelab/test/testl2.cc:81:17: note: in instantiation of function template specialization 'Dune::PDELab::interpolate), Dune::GridView > > >, (lambda at /<>/dune/pdelab/test/testl2.cc:75:5), DefaultDerivativeTraits>, Dune::PDELab::GridFunctionSpace > > >, Dune::PDELab::QkLocalFiniteElementMap > > >, double, double, 1>, Dune::PDELab::NoConstraints, Dune::PDELab::ISTL::VectorBackend, Dune::PDELab::LeafOrderingTag >, Dune::PDELab::ISTL::BlockVector > > >, Dune::PDELab::QkLocalFiniteElementMap > > >, double, double, 1>, Dune::PDELab::NoConstraints, Dune::PDELab::ISTL::VectorBackend, Dune::PDELab::LeafOrderingTag >, Dune::BlockVector, std::allocator > > > >' requested here Dune::PDELab::interpolate(f,scalar_gfs,scalar_v); ^ /<>/dune/pdelab/test/testl2.cc:151:5: note: in instantiation of function template specialization 'test_l2 > > > >' requested here test_l2(grid.leafGridView()); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/optional:581:7: note: explicitly defaulted function was implicitly deleted here _Optional_payload(const _Optional_payload&) = default; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../../include/c++/8/optional:622:24: note: copy constructor of '_Optional_payload >, YaspGeometry>, true, false, false>' is implicitly deleted because variant field '_M_payload' has a non-trivial copy constructor _Stored_type _M_payload; ^ 1 error generated. make[5]: *** [dune/pdelab/test/CMakeFiles/testl2.dir/build.make:66: dune/pdelab/test/CMakeFiles/testl2.dir/testl2.cc.o] Error 1 make[5]: Leaving directory '/<>/build' make[4]: *** [CMakeFiles/Makefile2:1921: dune/pdelab/test/CMakeFiles/testl2.dir/all] Error 2 make[4]: *** Waiting for unfinished jobs.... [ 6%] Linking CXX executable testranktransmission cd "/<>/build/dune/pdelab/test" && /usr/bin/cmake -E cmake_link_script CMakeFiles/testranktransmission.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -pthread -rdynamic CMakeFiles/testranktransmission.dir/testranktransmission.cc.o -o testranktransmission -Wl,-rpath,"/usr/lib/x86_64-linux-gnu/openmpi/lib:/<>/build/lib" -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so ../../../lib/libdunepdelab.so.2.5-dev -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libdunealbertagrid_3d.so.2.6-git -lalberta_3d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_2d.so.2.6-git -lalberta_2d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_1d.so.2.6-git -lalberta_1d -lalberta_utilities -lm -lltdl /usr/lib/x86_64-linux-gnu/libdunegrid.so.2.6-git /usr/lib/x86_64-linux-gnu/libdunegeometry.so.2.6-git /usr/lib/x86_64-linux-gnu/libugS3.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugS2.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugL.so.2.6.0 /usr/lib/x86_64-linux-gnu/libdunecommon.so.2.6-git -lgmp -lgmpxx -llapack -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[5]: Leaving directory '/<>/build' [ 6%] Built target testranktransmission [ 7%] Linking CXX executable testnonoverlapping cd "/<>/build/dune/pdelab/test" && /usr/bin/cmake -E cmake_link_script CMakeFiles/testnonoverlapping.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -pthread -rdynamic CMakeFiles/testnonoverlapping.dir/testnonoverlapping.cc.o -o testnonoverlapping -Wl,-rpath,"/usr/lib/x86_64-linux-gnu/openmpi/lib:/<>/build/lib" -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so ../../../lib/libdunepdelab.so.2.5-dev -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libdunealbertagrid_3d.so.2.6-git -lalberta_3d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_2d.so.2.6-git -lalberta_2d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_1d.so.2.6-git -lalberta_1d -lalberta_utilities -lm -lltdl /usr/lib/x86_64-linux-gnu/libdunegrid.so.2.6-git /usr/lib/x86_64-linux-gnu/libdunegeometry.so.2.6-git /usr/lib/x86_64-linux-gnu/libugS3.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugS2.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugL.so.2.6.0 /usr/lib/x86_64-linux-gnu/libdunecommon.so.2.6-git -lgmp -lgmpxx -llapack -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[5]: Leaving directory '/<>/build' [ 7%] Built target testnonoverlapping [ 7%] Linking CXX executable testadaptivity cd "/<>/build/dune/pdelab/test" && /usr/bin/cmake -E cmake_link_script CMakeFiles/testadaptivity.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++17 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -pthread -rdynamic CMakeFiles/testadaptivity.dir/testadaptivity.cc.o -o testadaptivity -Wl,-rpath,"/usr/lib/x86_64-linux-gnu/openmpi/lib:/<>/build/lib" -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so ../../../lib/libdunepdelab.so.2.5-dev -lldl -lspqr -lumfpack -lcholmod -lamd -lcamd -lcolamd -lccolamd -lsuitesparseconfig -lsuperlu -lblas -lgmp -lgmpxx -llapack -lblas -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libdunealbertagrid_3d.so.2.6-git -lalberta_3d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_2d.so.2.6-git -lalberta_2d /usr/lib/x86_64-linux-gnu/libdunealbertagrid_1d.so.2.6-git -lalberta_1d -lalberta_utilities -lm -lltdl /usr/lib/x86_64-linux-gnu/libdunegrid.so.2.6-git /usr/lib/x86_64-linux-gnu/libdunegeometry.so.2.6-git /usr/lib/x86_64-linux-gnu/libugS3.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugS2.so.2.6.0 /usr/lib/x86_64-linux-gnu/libugL.so.2.6.0 /usr/lib/x86_64-linux-gnu/libdunecommon.so.2.6-git -lgmp -lgmpxx -llapack -pthread /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so make[5]: Leaving directory '/<>/build' [ 7%] Built target testadaptivity make[4]: Leaving directory '/<>/build' make[3]: *** [CMakeFiles/Makefile2:1131: CMakeFiles/build_tests.dir/rule] Error 2 make[3]: Leaving directory '/<>/build' make[2]: *** [Makefile:590: build_tests] Error 2 make[2]: Leaving directory '/<>/build' dh_auto_build: cd build && make -j4 build_tests returned exit code 2 make[1]: *** [/usr/share/dune/dune-debian.mk:20: override_dh_auto_test] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:6: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-01-09T19:41:43Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 81144 Build-Time: 44 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 23 Job: dune-pdelab_2.6~20180302-1 Machine Architecture: amd64 Package: dune-pdelab Package-Time: 82 Source-Version: 2.6~20180302-1 Space: 81144 Status: attempted Version: 2.6~20180302-1 -------------------------------------------------------------------------------- Finished at 2019-01-09T19:41:43Z Build needed 00:01:22, 81144k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 82.681956518s DC-Time-Estimation: 82.681956518 versus expected 1757 (r/m: 20.250101884290775 ; m: 82.681956518)