DC-Build-Header: libncl 2.1.21+git20180827.c71b264-1 / 2019-01-09 21:24:21 +0000 DC-Task: type:rebuild-binarch-only source:libncl version:2.1.21+git20180827.c71b264-1 chroot:unstable esttime:344 logfile:/tmp/libncl_2.1.21+git20180827.c71b264-1_unstable_clang7.log modes:clang7:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang7 libncl_2.1.21+git20180827.c71b264-1' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-5-158.eu-central-1.compute.internal +==============================================================================+ | libncl 2.1.21+git20180827.c71b264-1 (amd64) Wed, 09 Jan 2019 21:24:21 +0000 | +==============================================================================+ Package: libncl Version: 2.1.21+git20180827.c71b264-1 Source Version: 2.1.21+git20180827.c71b264-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-3281e6d1-e6f7-4f19-9e80-8a5189cfd500' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang7 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=7 + echo 'Install of clang-7' Install of clang-7 + apt-get update Get:1 http://127.0.0.1:9999/debian sid InRelease [238 kB] Get:2 http://127.0.0.1:9999/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:4 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:6 http://127.0.0.1:9999/debian sid/main Translation-en [6275 kB] Fetched 6633 kB in 2s (3157 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-7 libomp-7-dev libobjc-8-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-7-dev libclang1-7 libedit2 libgc1c2 libllvm7 libobjc4 libomp5-7 Suggested packages: clang-7-doc libomp-7-doc Recommended packages: llvm-7-dev python The following NEW packages will be installed: clang-7 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-7-dev libclang1-7 libedit2 libgc1c2 libllvm7 libobjc-8-dev libobjc4 libomp-7-dev libomp5-7 0 upgraded, 14 newly installed, 0 to remove and 5 not upgraded. Need to get 34.5 MB of archives. After this operation, 185 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libllvm7 amd64 1:7.0.1-4 [13.0 MB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libobjc4 amd64 8.2.0-14 [50.4 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 libobjc-8-dev amd64 8.2.0-14 [225 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libc6-i386 amd64 2.28-4 [2873 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 lib32gcc1 amd64 1:8.2.0-14 [47.9 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 lib32stdc++6 amd64 8.2.0-14 [406 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 libclang-common-7-dev amd64 1:7.0.1-4 [3155 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 libclang1-7 amd64 1:7.0.1-4 [5991 kB] Get:12 http://127.0.0.1:9999/debian sid/main amd64 clang-7 amd64 1:7.0.1-4 [7887 kB] Get:13 http://127.0.0.1:9999/debian sid/main amd64 libomp5-7 amd64 1:7.0.1-4 [318 kB] Get:14 http://127.0.0.1:9999/debian sid/main amd64 libomp-7-dev amd64 1:7.0.1-4 [57.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.5 MB in 0s (118 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11802 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../02-libllvm7_1%3a7.0.1-4_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-4) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../03-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../04-libobjc4_8.2.0-14_amd64.deb ... Unpacking libobjc4:amd64 (8.2.0-14) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../05-libobjc-8-dev_8.2.0-14_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.2.0-14) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../06-libc6-i386_2.28-4_amd64.deb ... Unpacking libc6-i386 (2.28-4) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../07-lib32gcc1_1%3a8.2.0-14_amd64.deb ... Unpacking lib32gcc1 (1:8.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../08-lib32stdc++6_8.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (8.2.0-14) ... Selecting previously unselected package libclang-common-7-dev. Preparing to unpack .../09-libclang-common-7-dev_1%3a7.0.1-4_amd64.deb ... Unpacking libclang-common-7-dev (1:7.0.1-4) ... Selecting previously unselected package libclang1-7:amd64. Preparing to unpack .../10-libclang1-7_1%3a7.0.1-4_amd64.deb ... Unpacking libclang1-7:amd64 (1:7.0.1-4) ... Selecting previously unselected package clang-7. Preparing to unpack .../11-clang-7_1%3a7.0.1-4_amd64.deb ... Unpacking clang-7 (1:7.0.1-4) ... Selecting previously unselected package libomp5-7:amd64. Preparing to unpack .../12-libomp5-7_1%3a7.0.1-4_amd64.deb ... Unpacking libomp5-7:amd64 (1:7.0.1-4) ... Selecting previously unselected package libomp-7-dev. Preparing to unpack .../13-libomp-7-dev_1%3a7.0.1-4_amd64.deb ... Unpacking libomp-7-dev (1:7.0.1-4) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libc6-i386 (2.28-4) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libomp5-7:amd64 (1:7.0.1-4) ... Processing triggers for libc-bin (2.28-4) ... Setting up libomp-7-dev (1:7.0.1-4) ... Setting up lib32gcc1 (1:8.2.0-14) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libobjc4:amd64 (8.2.0-14) ... Setting up libobjc-8-dev:amd64 (8.2.0-14) ... Setting up libllvm7:amd64 (1:7.0.1-4) ... Setting up libclang1-7:amd64 (1:7.0.1-4) ... Setting up lib32stdc++6 (8.2.0-14) ... Setting up libclang-common-7-dev (1:7.0.1-4) ... Setting up clang-7 (1:7.0.1-4) ... Processing triggers for libc-bin (2.28-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-7 g++-4.6 + ln -s clang-7 gcc-4.6 + ln -s clang-7 cpp-4.6 + ln -s clang-7 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-7 g++-4.7 + ln -s clang-7 gcc-4.7 + ln -s clang-7 cpp-4.7 + ln -s clang-7 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-7 g++-4.8 + ln -s clang-7 gcc-4.8 + ln -s clang-7 cpp-4.8 + ln -s clang-7 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-7 g++-4.9 + ln -s clang-7 gcc-4.9 + ln -s clang-7 cpp-4.9 + ln -s clang-7 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-7 g++-5 + ln -s clang-7 gcc-5 + ln -s clang-7 cpp-5 + ln -s clang-7 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-7 g++-6 + ln -s clang-7 gcc-6 + ln -s clang-7 cpp-6 + ln -s clang-7 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-7 g++-7 + ln -s clang-7 gcc-7 + ln -s clang-7 cpp-7 + ln -s clang-7 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-7 g++-8 + ln -s clang-7 gcc-8 + ln -s clang-7 cpp-8 + ln -s clang-7 gcc + echo 'gcc-8 hold' + dpkg --set-selections + echo 'g++-8 hold' + dpkg --set-selections + cd - /build/libncl-N4hsGM + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang7'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libmpfr6 libpam-modules libpam-modules-bin libpam-runtime libpam0g 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1519 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libpam0g amd64 1.1.8-4 [124 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules-bin amd64 1.1.8-4 [106 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules amd64 1.1.8-4 [305 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libpam-runtime all 1.1.8-4 [211 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [773 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1519 kB in 0s (77.8 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libncl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libncl.git Please use: git clone https://salsa.debian.org/med-team/libncl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 564 kB of source archives. Get:1 http://127.0.0.1:9999/debian sid/main libncl 2.1.21+git20180827.c71b264-1 (dsc) [2180 B] Get:2 http://127.0.0.1:9999/debian sid/main libncl 2.1.21+git20180827.c71b264-1 (tar) [544 kB] Get:3 http://127.0.0.1:9999/debian sid/main libncl 2.1.21+git20180827.c71b264-1 (diff) [18.0 kB] Fetched 564 kB in 1s (553 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libncl-N4hsGM/libncl-2.1.21+git20180827.c71b264' with '<>' I: NOTICE: Log filtering will replace 'build/libncl-N4hsGM' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-oWagMI/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-oWagMI/apt_archive ./ InRelease Get:2 copy:/<>/resolver-oWagMI/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-oWagMI/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-oWagMI/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-oWagMI/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-oWagMI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), d-shlibs, python Filtered Build-Depends: debhelper (>= 11~), d-shlibs, python dpkg-deb: building package 'sbuild-build-depends-libncl-dummy' in '/<>/resolver-oWagMI/apt_archive/sbuild-build-depends-libncl-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libncl-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-oWagMI/apt_archive ./ InRelease Get:2 copy:/<>/resolver-oWagMI/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-oWagMI/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-oWagMI/apt_archive ./ Sources [501 B] Get:5 copy:/<>/resolver-oWagMI/apt_archive ./ Packages [584 B] Fetched 2048 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libncl build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libncurses6 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python2-doc python2.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libncurses6 libpipeline1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common sbuild-build-depends-libncl-dummy sensible-utils 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 25.6 MB of archives. After this operation, 92.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-oWagMI/apt_archive ./ sbuild-build-depends-libncl-dummy 0.invalid.0 [872 B] Get:2 http://127.0.0.1:9999/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libpipeline1 amd64 1.5.0-2 [29.5 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7-minimal amd64 2.7.15-5 [394 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 python2.7-minimal amd64 2.7.15-5 [1365 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 python2-minimal amd64 2.7.15-3 [41.3 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 python-minimal amd64 2.7.15-3 [20.9 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 mime-support all 3.61 [37.1 kB] Get:12 http://127.0.0.1:9999/debian sid/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:13 http://127.0.0.1:9999/debian sid/main amd64 readline-common all 7.0-5 [70.6 kB] Get:14 http://127.0.0.1:9999/debian sid/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:15 http://127.0.0.1:9999/debian sid/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1 [634 kB] Get:16 http://127.0.0.1:9999/debian sid/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:17 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7-stdlib amd64 2.7.15-5 [1909 kB] Get:18 http://127.0.0.1:9999/debian sid/main amd64 python2.7 amd64 2.7.15-5 [299 kB] Get:19 http://127.0.0.1:9999/debian sid/main amd64 libpython2-stdlib amd64 2.7.15-3 [20.7 kB] Get:20 http://127.0.0.1:9999/debian sid/main amd64 libpython-stdlib amd64 2.7.15-3 [20.7 kB] Get:21 http://127.0.0.1:9999/debian sid/main amd64 python2 amd64 2.7.15-3 [41.5 kB] Get:22 http://127.0.0.1:9999/debian sid/main amd64 python amd64 2.7.15-3 [22.7 kB] Get:23 http://127.0.0.1:9999/debian sid/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:24 http://127.0.0.1:9999/debian sid/main amd64 libmagic-mgc amd64 1:5.34-2 [239 kB] Get:25 http://127.0.0.1:9999/debian sid/main amd64 libmagic1 amd64 1:5.34-2 [116 kB] Get:26 http://127.0.0.1:9999/debian sid/main amd64 file amd64 1:5.34-2 [65.8 kB] Get:27 http://127.0.0.1:9999/debian sid/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:28 http://127.0.0.1:9999/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:29 http://127.0.0.1:9999/debian sid/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:30 http://127.0.0.1:9999/debian sid/main amd64 autoconf all 2.69-11 [341 kB] Get:31 http://127.0.0.1:9999/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:32 http://127.0.0.1:9999/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:33 http://127.0.0.1:9999/debian sid/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:34 http://127.0.0.1:9999/debian sid/main amd64 d-shlibs all 0.83 [17.1 kB] Get:35 http://127.0.0.1:9999/debian sid/main amd64 libtool all 2.4.6-6 [547 kB] Get:36 http://127.0.0.1:9999/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:37 http://127.0.0.1:9999/debian sid/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:38 http://127.0.0.1:9999/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB] Get:39 http://127.0.0.1:9999/debian sid/main amd64 dh-strip-nondeterminism all 1.0.0-1 [12.5 kB] Get:40 http://127.0.0.1:9999/debian sid/main amd64 libelf1 amd64 0.175-2 [160 kB] Get:41 http://127.0.0.1:9999/debian sid/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:42 http://127.0.0.1:9999/debian sid/main amd64 libglib2.0-0 amd64 2.58.2-3 [1257 kB] Get:43 http://127.0.0.1:9999/debian sid/main amd64 libicu63 amd64 63.1-5 [8293 kB] Get:44 http://127.0.0.1:9999/debian sid/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:45 http://127.0.0.1:9999/debian sid/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:46 http://127.0.0.1:9999/debian sid/main amd64 libncurses6 amd64 6.1+20181013-1 [102 kB] Get:47 http://127.0.0.1:9999/debian sid/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:48 http://127.0.0.1:9999/debian sid/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:49 http://127.0.0.1:9999/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:50 http://127.0.0.1:9999/debian sid/main amd64 debhelper all 12 [1002 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.6 MB in 0s (98.2 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.0-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.5-1_amd64.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../05-libpython2.7-minimal_2.7.15-5_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.15-5) ... 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Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up m4 (1.4.18-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up sensible-utils (0.0.12) ... Processing triggers for libc-bin (2.28-4) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libssl1.1:amd64 (1.1.1a-1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-5) ... Setting up autopoint (0.19.8.1-9) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up python2.7 (2.7.15-5) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up python2 (2.7.15-3) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up python (2.7.15-3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12) ... Setting up sbuild-build-depends-libncl-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-14 gcc-8_8.2.0-14 libc6-dev_2.28-4 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 linux-libc-dev_4.19.13-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 clang-7_1:7.0.1-4 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-14 d-shlibs_0.83 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2 g++-8_8.2.0-14 gcc_4:8.2.0-2 gcc-8_8.2.0-14 gcc-8-base_8.2.0-14 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8.2.0-14 lib32stdc++6_8.2.0-14 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libasan5_8.2.0-14 libatomic1_8.2.0-14 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-11 libblkid1_2.33-0.2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-4 libc-dev-bin_2.28-4 libc6_2.28-4 libc6-dev_2.28-4 libc6-i386_2.28-4 libcap-ng0_0.7.9-1+b1 libcc1-0_8.2.0-14 libclang-common-7-dev_1:7.0.1-4 libclang1-7_1:7.0.1-4 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.246 libdpkg-perl_1.19.2 libedit2_3.1-20181209-1 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.2.0-14 libgcc1_1:8.2.0-14 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2 libgomp1_8.2.0-14 libgpg-error0_1.33-3 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn2-0_2.0.5-1 libisl19_0.20-2 libitm1_8.2.0-14 libllvm7_1:7.0.1-4 liblsan0_8.2.0-14 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpfr6_4.0.2~rc1-1 libmpx2_8.2.0-14 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libobjc-8-dev_8.2.0-14 libobjc4_8.2.0-14 libomp-7-dev_1:7.0.1-4 libomp5-7_1:7.0.1-4 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpython-stdlib_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libquadmath0_8.2.0-14 libreadline7_7.0-5 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 libsystemd0_240-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libtsan0_8.2.0-14 libubsan1_8.2.0-14 libuchardet0_0.0.6-3 libudev1_240-2 libunistring2_0.9.10-1 libuuid1_2.33-0.2 libxml2_2.9.4+dfsg1-7+b3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.13-1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mime-support_3.61 mount_2.33-0.2 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 po-debconf_1.0.21 python_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-minimal_2.7.15-5 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libncl-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-3 tar_1.30+dfsg-4 tzdata_2018i-1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 4 18:17:52 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libncl_2.1.21+git20180827.c71b264-1.dsc dpkg-source: info: extracting libncl in /<>/libncl-2.1.21+git20180827.c71b264 dpkg-source: info: unpacking libncl_2.1.21+git20180827.c71b264.orig.tar.xz dpkg-source: info: unpacking libncl_2.1.21+git20180827.c71b264-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_rpath_issue.patch dpkg-source: info: applying set_soname_version.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-3281e6d1-e6f7-4f19-9e80-8a5189cfd500 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libncl dpkg-buildpackage: info: source version 2.1.21+git20180827.c71b264-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' dh_clean find . -name ".roundTripNCL*" -delete make[1]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:28: installing 'config/compile' configure.ac:21: installing 'config/missing' example/basiccmdline/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' dh_auto_configure -- --with-constfuncs=yes ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1001' is supported by ustar format... yes checking whether GID '1001' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler works... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for working strtod... yes checking for memmove... yes checking for strchr... yes checking for strtol... yes checking for python... /usr/bin/python checking python module: subprocess... yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating example/Makefile config.status: creating example/basiccmdline/Makefile config.status: creating example/check-taxo-nodes/Makefile config.status: creating example/compressor/Makefile config.status: creating example/find-unsupported-edges/Makefile config.status: creating example/gapcode/Makefile config.status: creating example/ot-subtree/Makefile config.status: creating example/ot-tree-inspect/Makefile config.status: creating example/nclsimplest/Makefile config.status: creating example/ncltest/Makefile config.status: creating example/normalizer/Makefile config.status: creating example/patristic/Makefile config.status: creating example/phylobaseinterface/Makefile config.status: creating example/polytomy-count/Makefile config.status: creating example/outdeg1count/Makefile config.status: creating example/splitsinfile/Makefile config.status: creating example/subsetter/Makefile config.status: creating example/translate/Makefile config.status: creating ncl/Makefile config.status: creating test/Makefile config.status: creating nclv2.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' make all-recursive make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' Making all in ncl make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsassumptionsblock.lo nxsassumptionsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsblock.lo nxsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxscharactersblock.lo nxscharactersblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxscxxdiscretematrix.lo nxscxxdiscretematrix.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsblock.cpp -fPIC -DPIC -o .libs/nxsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscharactersblock.cpp -fPIC -DPIC -o .libs/nxscharactersblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsassumptionsblock.cpp -fPIC -DPIC -o .libs/nxsassumptionsblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscxxdiscretematrix.cpp -fPIC -DPIC -o .libs/nxscxxdiscretematrix.o In file included from nxscxxdiscretematrix.cpp:20: In file included from ../ncl/nxscxxdiscretematrix.h:28: In file included from ../ncl/nxscharactersblock.h:29: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from nxsassumptionsblock.cpp:22: In file included from ../ncl/nxsassumptionsblock.h:27: In file included from ../ncl/nxstreesblock.h:25: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from nxscharactersblock.cpp:26: In file included from ../ncl/nxscharactersblock.h:29: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsblock.cpp -o nxsblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsdatablock.lo nxsdatablock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdatablock.cpp -fPIC -DPIC -o .libs/nxsdatablock.o In file included from nxsdatablock.cpp:20: In file included from ../ncl/nxsdatablock.h:23: In file included from ../ncl/nxscharactersblock.h:29: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdatablock.cpp -o nxsdatablock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsdistancesblock.lo nxsdistancesblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsexception.lo nxsexception.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdistancesblock.cpp -fPIC -DPIC -o .libs/nxsdistancesblock.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsexception.cpp -fPIC -DPIC -o .libs/nxsexception.o In file included from nxsdistancesblock.cpp:23: In file included from ../ncl/nxsdistancesblock.h:24: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsexception.cpp -o nxsexception.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsmultiformat.lo nxsmultiformat.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsmultiformat.cpp -fPIC -DPIC -o .libs/nxsmultiformat.o In file included from nxsmultiformat.cpp:50: In file included from ../ncl/nxsmultiformat.h:25: In file included from ../ncl/nxspublicblocks.h:25: In file included from ../ncl/nxsassumptionsblock.h:27: In file included from ../ncl/nxstreesblock.h:25: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsdistancesblock.cpp -o nxsdistancesblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxspublicblocks.lo nxspublicblocks.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxspublicblocks.cpp -fPIC -DPIC -o .libs/nxspublicblocks.o In file included from nxspublicblocks.cpp:24: In file included from ../ncl/nxspublicblocks.h:25: In file included from ../ncl/nxsassumptionsblock.h:27: In file included from ../ncl/nxstreesblock.h:25: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsmultiformat.cpp -o nxsmultiformat.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxscharactersblock.cpp -o nxscharactersblock.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxspublicblocks.cpp -o nxspublicblocks.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsreader.lo nxsreader.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsreader.cpp -fPIC -DPIC -o .libs/nxsreader.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxssetreader.lo nxssetreader.cpp In file included from nxsreader.cpp:28: In file included from ../ncl/nxscharactersblock.h:29: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxssetreader.cpp -fPIC -DPIC -o .libs/nxssetreader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxssetreader.cpp -o nxssetreader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsstring.lo nxsstring.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsstring.cpp -fPIC -DPIC -o .libs/nxsstring.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstaxablock.lo nxstaxablock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxablock.cpp -fPIC -DPIC -o .libs/nxstaxablock.o In file included from nxstaxablock.cpp:20: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsstring.cpp -o nxsstring.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsreader.cpp -o nxsreader.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstaxaassociationblock.lo nxstaxaassociationblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxaassociationblock.cpp -fPIC -DPIC -o .libs/nxstaxaassociationblock.o In file included from nxstaxaassociationblock.cpp:25: In file included from ../ncl/nxstaxaassociationblock.h:23: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxablock.cpp -o nxstaxablock.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstoken.lo nxstoken.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstoken.cpp -fPIC -DPIC -o .libs/nxstoken.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxstreesblock.lo nxstreesblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstreesblock.cpp -fPIC -DPIC -o .libs/nxstreesblock.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsunalignedblock.lo nxsunalignedblock.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsunalignedblock.cpp -fPIC -DPIC -o .libs/nxsunalignedblock.o In file included from nxstreesblock.cpp:23: In file included from ../ncl/nxstreesblock.h:25: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from nxsunalignedblock.cpp:21: In file included from ../ncl/nxsunalignedblock.h:24: ../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstoken.cpp -o nxstoken.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxsunalignedblock.cpp -o nxsunalignedblock.o >/dev/null 2>&1 1 warning generated. libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c nxstreesblock.cpp -o nxstreesblock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -version-info 2:0:0 -Wl,-z,relro -Wl,-z,now -o libncl.la -rpath /usr/lib/x86_64-linux-gnu nxsassumptionsblock.lo nxsblock.lo nxscharactersblock.lo nxscxxdiscretematrix.lo nxsdatablock.lo nxsdistancesblock.lo nxsexception.lo nxsmultiformat.lo nxspublicblocks.lo nxsreader.lo nxssetreader.lo nxsstring.lo nxstaxablock.lo nxstaxaassociationblock.lo nxstoken.lo nxstreesblock.lo nxsunalignedblock.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/bin/../lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/nxsassumptionsblock.o .libs/nxsblock.o .libs/nxscharactersblock.o .libs/nxscxxdiscretematrix.o .libs/nxsdatablock.o .libs/nxsdistancesblock.o .libs/nxsexception.o .libs/nxsmultiformat.o .libs/nxspublicblocks.o .libs/nxsreader.o .libs/nxssetreader.o .libs/nxsstring.o .libs/nxstaxablock.o .libs/nxstaxaassociationblock.o .libs/nxstoken.o .libs/nxstreesblock.o .libs/nxsunalignedblock.o -L/usr/bin/../lib/gcc/x86_64-linux-gnu/8 -L/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/llvm-7/bin/../lib -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/bin/../lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -O3 -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libncl.so.2 -o .libs/libncl.so.2.0.0 libtool: link: (cd ".libs" && rm -f "libncl.so.2" && ln -s "libncl.so.2.0.0" "libncl.so.2") libtool: link: (cd ".libs" && rm -f "libncl.so" && ln -s "libncl.so.2.0.0" "libncl.so") libtool: link: ar cru .libs/libncl.a nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancesblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstaxaassociationblock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libncl.a libtool: link: ( cd ".libs" && rm -f "libncl.la" && ln -s "../libncl.la" "libncl.la" ) make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' Making all in example make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' Making all in basiccmdline make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o basiccmdline.o basiccmdline.cpp In file included from basiccmdline.cpp:20: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o basiccmdline basiccmdline.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/basiccmdline basiccmdline.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' Making all in check-taxo-nodes make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o checktaxonnodes-checktaxonnodes.o `test -f 'checktaxonnodes.cpp' || echo './'`checktaxonnodes.cpp In file included from checktaxonnodes.cpp:20: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' Making all in compressor make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSCharacterCompressor-compressor.o `test -f 'compressor.cpp' || echo './'`compressor.cpp In file included from compressor.cpp:4: In file included from ../../ncl/nxscxxdiscretematrix.h:28: In file included from ../../ncl/nxscharactersblock.h:29: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' Making all in find-unsupported-edges make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o findunsupportededges-findunsupportededges.o `test -f 'findunsupportededges.cpp' || echo './'`findunsupportededges.cpp In file included from findunsupportededges.cpp:20: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' Making all in gapcode make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSgapcode-gapcode.o `test -f 'gapcode.cpp' || echo './'`gapcode.cpp In file included from gapcode.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' Making all in nclsimplest make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' g++ -DHAVE_CONFIG_H -I. -I../.. -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nclsimplest.o nclsimplest.cpp In file included from nclsimplest.cpp:1: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o nclsimplest nclsimplest.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/nclsimplest nclsimplest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' Making all in ncltest make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o ncltest.o ncltest.cpp In file included from ncltest.cpp:20: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o ncltest ncltest.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncltest ncltest.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' Making all in normalizer make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o normalizer.o normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_VALIDATE_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSvalidator-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLconverter-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLconverter-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp In file included from In file included from us2ml.cpp:22: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ normalizer.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from normalizer.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from normalizer.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLconverter-converter.o `test -f 'converter.cpp' || echo './'`converter.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_REPORT_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSinspector-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEX_us2ml-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp In file included from In file included from normalizer.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ converter.cpp:48: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from normalizer.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEX_us2ml-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp 1 warning generated. g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DMULTIFILE_NEXUS_READER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSunion-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp In file included from us2ml.cpp:22: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from normalizer.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSnormalizer normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSnormalizer normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/.libs/libncl.so /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/.libs/libncl.so 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSunion NEXUSunion-normalizer.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSunion NEXUSunion-normalizer.o ../../ncl/.libs/libncl.so 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/.libs/libncl.so 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' Making all in ot-subtree make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o otsubtree-otsubtree.o `test -f 'otsubtree.cpp' || echo './'`otsubtree.cpp In file included from otsubtree.cpp:20: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o otsubtree otsubtree-otsubtree.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otsubtree otsubtree-otsubtree.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' Making all in ot-tree-inspect make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o otTreeInspect-ot_tree_inspect.o `test -f 'ot_tree_inspect.cpp' || echo './'`ot_tree_inspect.cpp In file included from ot_tree_inspect.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' Making all in outdeg1count make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o outdeg1count-outdeg1count.o `test -f 'outdeg1count.cpp' || echo './'`outdeg1count.cpp In file included from outdeg1count.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o outdeg1count outdeg1count-outdeg1count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' Making all in patristic make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o patristic.o patristic.cpp In file included from patristic.cpp:33: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' Making all in phylobaseinterface make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp In file included from NCLInterface.cpp:24: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' Making all in polytomy-count make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp In file included from polytomy_count.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' Making all in splitsinfile make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp In file included from splitsstructs.cpp:1: In file included from ./splitsstructs.h:9: In file included from ../../ncl/nxstreesblock.h:25: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from splitsstructs.cpp:1: In file included from ./splitsstructs.h:9: In file included from ../../ncl/nxstreesblock.h:25: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ In file included from In file included from splitsinfile.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ splitsinfile.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 11 warning generated. warning generated. 1 warning generated. 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' Making all in subsetter make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp In file included from subsetter.cpp:4: In file included from ../../ncl/nxsmultiformat.h:25: In file included from ../../ncl/nxspublicblocks.h:25: In file included from ../../ncl/nxsassumptionsblock.h:27: In file included from ../../ncl/nxstreesblock.h:25: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' Making all in translate make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp In file included from translateNuc.cpp:46: In file included from ../../ncl/ncl.h:85: ../../ncl/nxstaxablock.h:217:12: warning: assigning field to itself [-Wself-assign-field] taxSets = taxSets; ^ 1 warning generated. /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>/libncl-2.1.21+git20180827.c71b264=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' Making all in test make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' make[1]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' Making check in ncl make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' Making check in example make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' Making check in basiccmdline make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' Making check in check-taxo-nodes make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' Making check in compressor make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' Making check in find-unsupported-edges make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' Making check in gapcode make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' Making check in nclsimplest make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' Making check in ncltest make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' /usr/bin/python ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut "/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest/ncltest" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/OldValidIn/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/ncltest/ncltest succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/OldValidIn/m.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest/ncltest" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/OldValidOut/m.nex" [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/ncltest/ncltest succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/OldValidOut/m.nex make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' Making check in normalizer make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/data/characters.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/data/characters.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/data/characters.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/data/characters.nex /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/data/sample.tre" [Reading /<>/libncl-2.1.21+git20180827.c71b264/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/data/sample.tre "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/data/sample.tre" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/data/sample.tre /usr/bin/python ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/notaxablock-quotes.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/notaxablock-quotes.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 7 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/notaxablock-quotes.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/notaxablock-quotes.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/notaxablock-quotes.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/notaxablock-quotes.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-rake.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 929) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 968) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-rake.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-rake.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-rake.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/dzmissing_bug.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/dzmissing_bug.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/dzmissing_bug.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/dzmissing_bug.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/dzmissing_bug.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS storing read block: MACCLADE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/dzmissing_bug.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/adh.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/adh.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/adh.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/adh.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/adh.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/adh.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/charsets.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/charsets.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/charsets.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/charsets.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/charsets.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/charsets.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/mdata.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/mdata.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/mdata.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/mdata.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/mdata.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/mdata.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-mac.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-mac.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-mac.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-mac.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/m.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/m.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/m.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/m.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-mixed-line-endings.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-mixed-line-endings.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-mixed-line-endings.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-mixed-line-endings.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/distances.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/distances.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/distances.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/distances.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/protein.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/protein.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/protein.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/protein.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/primates.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/primates.nex ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/primates.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/primates.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/primates.nex ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/primates.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/paup_characters.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/paup_characters.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/paup_characters.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 188) storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/paup_characters.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/treeswithouttaxa.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/treeswithouttaxa.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 10 (file position 26) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/treeswithouttaxa.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/treeswithouttaxa.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/treeswithouttaxa.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/treeswithouttaxa.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/bglobin.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/bglobin.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/bglobin.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/bglobin.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/bglobin.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-unix.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-unix.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-unix.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-unix.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/avian_ovomucoids.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/avian_ovomucoids.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/avian_ovomucoids.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/avian_ovomucoids.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/avian_ovomucoids.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/avian_ovomucoids.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/anolis.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/anolis.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/anolis.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/anolis.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/anolis.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/anolis.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/characters.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/characters.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/characters.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/characters.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-dos.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/basic-bush-dos.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-dos.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/basic-bush-dos.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/partitions.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/partitions.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/partitions.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/partitions.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/partitions.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/partitions.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/linktest.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/linktest.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 189) storing read block: TAXA Warning: Skipping command: blockid at line 27, column (approximately) 11 (file position 388) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS Warning: Skipping unknown LINK subcommand: characters at line 61, column (approximately) 38 (file position 1551) storing read block: TREES Warning: Skipping unknown LINK subcommand: characters at line 71, column (approximately) 38 (file position 1745) storing read block: TREES storing implied block: ASSUMPTIONS storing implied block: ASSUMPTIONS storing read block: ASSUMPTIONS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 90, column (approximately) 42 (file position 2360) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/linktest.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/linktest.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/linktest.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 168) storing read block: TAXA Warning: Skipping command: blockid at line 12, column (approximately) 13 (file position 341) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: TREES storing read block: TREES storing read block: SETS storing read block: SETS storing read block: SETS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 84, column (approximately) 20 (file position 2384) storing read block: SETS storing read block: SETS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/linktest.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/notaxablock.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/notaxablock.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 13 (file position 32) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/notaxablock.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/notaxablock.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/notaxablock.nex ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/notaxablock.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/kim.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/kim.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/kim.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/kim.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/kim.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/kim.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/associates.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/associates.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/associates.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/associates.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/cynmix.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/cynmix.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/cynmix.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/cynmix.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/cynmix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/cynmix.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/t.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/t.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/t.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/t.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/nhxtree.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 1014) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 1053) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/nhxtree.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/nhxtree.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/nhxtree.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/replicase.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/replicase.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/replicase.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/replicase.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/replicase.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/replicase.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/unaligned.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/unaligned.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/unaligned.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/unaligned.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/parens_intree.tre" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidIn/parens_intree.tre "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/parens_intree.tre" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/NTSValidOut/parens_intree.tre /usr/bin/python ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/libncl-2.1.21+git20180827.c71b264/test/funkyValidIn/choke.tre" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/funkyValidIn/choke.tre ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 5, column (approximately) 6 (file position 74) storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/funkyValidIn/choke.tre "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/libncl-2.1.21+git20180827.c71b264/test/funkyValidOut/choke.tre" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/funkyValidOut/choke.tre ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/funkyValidOut/choke.tre /usr/bin/python ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/relaxedphyliptree_q.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/relaxedphyliptree_q.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/relaxedphyliptree_q.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/relaxedphyliptree_q.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/relaxedphyliptree_q.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/relaxedphyliptree_q.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/dnarelaxedphylip_brana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/dnarelaxedphylip_brana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/dnarelaxedphylip_brana.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/dnarelaxedphylip_brana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/dnarelaxedphylip_brana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/dnarelaxedphylip_brana.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaphylip_emboss.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaphylip_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaphylip_emboss.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaphylip_emboss.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaphylip_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaphylip_emboss.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/phyliptree_simple.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/phyliptree_simple.phy ] Executing storing implied block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/phyliptree_simple.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/phyliptree_simple.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/phyliptree_simple.phy ] Executing storing read block: TAXA storing read block: TREES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/phyliptree_simple.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/dnarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/dnarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/dnarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/dnarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aarelaxedphylip_rana.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaphylipinterleaved_emboss.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaphylipinterleaved_emboss.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaphylipinterleaved_emboss.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaphylipinterleaved_emboss.phy "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aafasta_twoprot.fas" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aafasta_twoprot.fas ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aafasta_twoprot.fas "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aafasta_twoprot.fas" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aafasta_twoprot.fas ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aafasta_twoprot.fas "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaaln_twoprot_undec.aln" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaaln_twoprot_undec.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaaln_twoprot_undec.aln "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaaln_twoprot_undec.aln" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaaln_twoprot_undec.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaaln_twoprot_undec.aln "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaaln_twoprot.aln" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaaln_twoprot.aln ] Executing storing implied block: TAXA storing read block: DATA ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidIn/aaaln_twoprot.aln "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaaln_twoprot.aln" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaaln_twoprot.aln ] Executing storing read block: TAXA storing read block: CHARACTERS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalValidOut/aaaln_twoprot.aln /usr/bin/python ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ] Executing Error: Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945 at line 12, column (approximately) 28 (and file position 20065) "/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/libncl-2.1.21+git20180827.c71b264/test/ExternalInvalidIn/aarelaxedphylip_rana.phy" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ] Executing Error: Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short. at line 3, column (approximately) 2 (and file position 2011) /usr/bin/python ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer /sbuild-nonexistent/.ncl_round_triprc does not exist. Test stepped skipped. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' Making check in ot-subtree make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' Making check in ot-tree-inspect make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' Making check in outdeg1count make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' Making check in patristic make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' Making check in phylobaseinterface make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' Making check in polytomy-count make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' Making check in splitsinfile make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' Making check in subsetter make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' Making check in translate make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make check-local make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' /usr/bin/python ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut "/<>/libncl-2.1.21+git20180827.c71b264/example/translate/NEXUStranslate" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/TranslateIn/bglobin.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/TranslateIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/translate/NEXUStranslate succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/TranslateIn/bglobin.nex "/<>/libncl-2.1.21+git20180827.c71b264/example/translate/NEXUStranslate" "-s2" "/<>/libncl-2.1.21+git20180827.c71b264/test/TranslateIn/bglobinoof.nex" [Reading /<>/libncl-2.1.21+git20180827.c71b264/test/TranslateIn/bglobinoof.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: CODONS ../../test/roundTripNCLTest.py : Call to /<>/libncl-2.1.21+git20180827.c71b264/example/translate/NEXUStranslate succeeded for /<>/libncl-2.1.21+git20180827.c71b264/test/TranslateIn/bglobinoof.nex make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' Making check in test make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' make[1]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libncl-2.1.21\+git20180827.c71b264/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' Making install in ncl make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libncl.la '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 libtool: install: (cd /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; }) libtool: install: (cd /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; }) libtool: install: /usr/bin/install -c .libs/libncl.lai /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la libtool: install: /usr/bin/install -c .libs/libncl.a /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: install: chmod 644 /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: install: ranlib /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/include/ncl' /usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/include/ncl' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/ncl' Making install in example make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' Making install in basiccmdline make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/basiccmdline' Making install in check-taxo-nodes make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/checktaxonnodes /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/checktaxonnodes make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/check-taxo-nodes' Making install in compressor make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/compressor' Making install in find-unsupported-edges make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/findunsupportededges /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/findunsupportededges make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/find-unsupported-edges' Making install in gapcode make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/gapcode' Making install in nclsimplest make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/nclsimplest' Making install in ncltest make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ncltest' Making install in normalizer make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/NEXUSnormalizer libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/NEXUSvalidator libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NCLconverter /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/NCLconverter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/normalizer' Making install in ot-subtree make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otsubtree '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/otsubtree /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/otsubtree make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-subtree' Making install in ot-tree-inspect make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/otTreeInspect /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/otTreeInspect make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/ot-tree-inspect' Making install in outdeg1count make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c outdeg1count '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/outdeg1count /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/bin/outdeg1count make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/outdeg1count' Making install in patristic make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/patristic' Making install in phylobaseinterface make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/phylobaseinterface' Making install in polytomy-count make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/polytomy-count' Making install in splitsinfile make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/splitsinfile' Making install in subsetter make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/subsetter' Making install in translate make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example/translate' make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[4]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/example' Making install in test make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264/test' make[2]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' make[3]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 nclv2.1.pc '/<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' make[2]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' make[1]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' debian/rules override_dh_install make[1]: Entering directory '/<>/libncl-2.1.21+git20180827.c71b264' dh_install # bash debian/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \ debian/tmp/usr/lib/*/libncl.so Library package automatic movement utility set -e install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncl2/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a debian/libncl-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la debian/libncl-dev/usr/lib/x86_64-linux-gnu || true mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so debian/libncl-dev/usr/lib/x86_64-linux-gnu mv /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2 debian/libncl2/usr/lib/x86_64-linux-gnu mv /<>/libncl-2.1.21+git20180827.c71b264/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 debian/libncl2/usr/lib/x86_64-linux-gnu PKGDEV=libncl-dev PKGSHL=libncl2 install -d -m 755 debian/libncl-dev/usr/include/ncl mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl make[1]: Leaving directory '/<>/libncl-2.1.21+git20180827.c71b264' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libncl2/DEBIAN/symbols doesn't match completely debian/libncl2.symbols.amd64 --- debian/libncl2.symbols.amd64 (libncl2_2.1.21+git20180827.c71b264-1_amd64) +++ dpkg-gensymbolsTf9Fjl 2019-01-09 21:26:39.056125750 +0000 @@ -1,6 +1,6 @@ libncl.so.2 libncl2 #MINVER# _Z10fileExistsRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - _Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18 _Z15parseNHXCommentNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3mapIS4_S4_St4lessIS4_ESaISt4pairIKS4_S4_EEE@Base 2.1.18 _Z16disambiguateNameRKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessIS5_ESaISt4pairIKS5_jEEERKSt3setIjS6_IjESaIjEER9NxsStringPKcb@Base 2.1.21+git20171002.4becff7 _Z18NxsWriteSetCommandPKcRKSt3mapI9NxsStringSt3setIjSt4lessIjESaIjEES4_IS2_ESaISt4pairIKS2_S7_EEERSoS0_@Base 2.1.18 @@ -29,8 +29,8 @@ _ZN12NxsDataBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN12NxsDataBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN12NxsDataBlockD0Ev@Base 2.1.18 - _ZN12NxsDataBlockD1Ev@Base 2.1.18 - _ZN12NxsDataBlockD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN12NxsDataBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN12NxsDataBlockD2Ev@Base 2.1.18 _ZN12NxsException15addPositionInfoERK15NxsTokenPosInfo@Base 2.1.18 _ZN12NxsException15addPositionInfoERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsException15addPositionInfoERK8NxsToken@Base 2.1.18 @@ -39,14 +39,14 @@ _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18 - _ZN12NxsExceptionC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN12NxsExceptionC1ERKS_@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK15NxsTokenPosInfo@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18 - _ZN12NxsExceptionC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN12NxsExceptionC2ERKS_@Base 2.1.18 _ZN12NxsExceptionD0Ev@Base 2.1.18 - _ZN12NxsExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN12NxsExceptionD1Ev@Base 2.1.18 _ZN12NxsExceptionD2Ev@Base 2.1.18 _ZN12NxsSetReader13AddRangeToSetEjjjPSt3setIjSt4lessIjESaIjEEPKS4_R8NxsToken@Base 2.1.18 _ZN12NxsSetReader13GetTokenValueEv@Base 2.1.18 @@ -86,9 +86,10 @@ _ZN13NxsSimpleTree12AllocNewNodeEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree12RerootAtNodeEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree20FlipRootsChildToRootEP13NxsSimpleNode@Base 2.1.18 + _ZN13NxsSimpleTree5ClearEv@Base 2.1.21+git20180827.c71b264-1 _ZN13NxsSimpleTree8RerootAtEj@Base 2.1.18 - _ZN13NxsSimpleTreeD1Ev@Base 2.1.18 - _ZN13NxsSimpleTreeD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN13NxsSimpleTreeD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN13NxsSimpleTreeD2Ev@Base 2.1.18 _ZN13NxsTreesBlock11GetNumTreesEv@Base 2.1.18 _ZN13NxsTreesBlock11GetTreeNameEj@Base 2.1.18 _ZN13NxsTreesBlock12IsRootedTreeEj@Base 2.1.18 @@ -120,19 +121,23 @@ _ZN13NxsTreesBlockD2Ev@Base 2.1.18 _ZN15NxsBlockFactory10BlockErrorEP8NxsBlock@Base 2.1.18 _ZN15NxsBlockFactory12BlockSkippedEP8NxsBlock@Base 2.1.18 + _ZN15NxsBlockFactoryD2Ev@Base 2.1.21+git20180827.c71b264-1 _ZN15NxsCodonTripletC1EPKc@Base 2.1.18 _ZN15NxsCodonTripletC2EPKc@Base 2.1.18 + _ZN15NxsTaxaBlockAPID0Ev@Base 2.1.21+git20180827.c71b264-1 + _ZN15NxsTaxaBlockAPID2Ev@Base 2.1.21+git20180827.c71b264-1 _ZN16BogusToIndMapper14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN16BogusToIndMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN16BogusToIndMapper15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZN16BogusToIndMapperD0Ev@Base 2.1.18 - _ZN16BogusToIndMapperD1Ev@Base 2.1.18 - _ZN16BogusToIndMapperD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN16BogusToIndMapperD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN16BogusToIndMapperD2Ev@Base 2.1.18 _ZN16FileToCharBuffer12refillBufferEm@Base 2.1.21+git20171002.4becff7 _ZN16FileToCharBuffer25skip_to_beginning_of_lineERc@Base 2.1.18 _ZN16FileToCharBuffer7advanceEv@Base 2.1.18 _ZN16FileToCharBufferC1ERSi@Base 2.1.18 _ZN16FileToCharBufferC2ERSi@Base 2.1.18 + _ZN16NxsIntStepMatrixC2ERKS_@Base 2.1.21+git20180827.c71b264-1 _ZN17MultiFormatReader10ReadStreamERSiNS_14DataFormatTypeEPKc@Base 2.1.18 _ZN17MultiFormatReader10ReadStreamERSiPKc@Base 2.1.18 _ZN17MultiFormatReader11readAlnDataER16FileToCharBufferRK25NxsDiscreteDatatypeMapperRNSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEERNS6_ISt6vectorIiSaIiEESaISH_EEE@Base 2.1.18 @@ -174,6 +179,7 @@ _ZN17NxsDistancesBlockD0Ev@Base 2.1.18 _ZN17NxsDistancesBlockD1Ev@Base 2.1.18 _ZN17NxsDistancesBlockD2Ev@Base 2.1.18 + _ZN17NxsRealStepMatrixC2ERKS_@Base 2.1.21+git20180827.c71b264-1 _ZN17NxsUnalignedBlock11IsInSymbolsEc@Base 2.1.18 _ZN17NxsUnalignedBlock12GetNumStatesEjj@Base 2.1.18 _ZN17NxsUnalignedBlock12HandleFormatER8NxsToken@Base 2.1.18 @@ -201,12 +207,15 @@ _ZN17NxsUnalignedBlockD2Ev@Base 2.1.18 _ZN17ProcessedNxsToken14ParseSimpleCmdERKSt6vectorIS_SaIS_EEb@Base 2.1.18 _ZN17ProcessedNxsToken16IncrementNotLastERN9__gnu_cxx17__normal_iteratorIPKS_St6vectorIS_SaIS_EEEERKS7_PKc@Base 2.1.18 - _ZN17ProcessedNxsTokenD1Ev@Base 2.1.18 - _ZN17ProcessedNxsTokenD2Ev@Base 2.1.18 + _ZN17ProcessedNxsTokenC2ERK8NxsToken@Base 2.1.21+git20180827.c71b264-1 + _ZN17ProcessedNxsTokenC2ERKS_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN17ProcessedNxsTokenD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN17ProcessedNxsTokenD2Ev@Base 2.1.18 _ZN17PublicNexusReader10AddFactoryEP15NxsBlockFactory@Base 2.1.18 _ZN17PublicNexusReader12ClearContentEv@Base 2.1.18 _ZN17PublicNexusReader12RegisterTaxaERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EE@Base 2.1.18 _ZN17PublicNexusReader15PostExecuteHookEv@Base 2.1.18 + _ZN17PublicNexusReader16AddReadTaxaBlockEP12NxsTaxaBlock@Base 2.1.21+git20180827.c71b264-1 _ZN17PublicNexusReader16parseFileOrThrowB5cxx11EPKcN9NxsReader19WarningHandlingModeEbb@Base 2.1.18 _ZN17PublicNexusReader18ClearUsedBlockListEv@Base 2.1.18 _ZN17PublicNexusReader25DeleteBlocksFromFactoriesEv@Base 2.1.18 @@ -254,7 +263,7 @@ _ZN18NxsCharactersBlock26CodonPosPartitionToPosListERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEEPNS1_IiSaIiEEE@Base 2.1.18 _ZN18NxsCharactersBlock27CreateDatatypeMapperObjectsERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEERKSt6vectorINS_13DataTypesEnumESaISJ_EE@Base 2.1.18 _ZN18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 - _ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18 _ZN18NxsCharactersBlock4ReadER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock5ResetEv@Base 2.1.18 _ZN18NxsCharactersBlock7ConsumeERS_@Base 2.1.18 @@ -262,18 +271,18 @@ _ZN18NxsCharactersBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN18NxsCharactersBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN18NxsCharactersBlockD0Ev@Base 2.1.18 - _ZN18NxsCharactersBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN18NxsCharactersBlockD1Ev@Base 2.1.18 _ZN18NxsCharactersBlockD2Ev@Base 2.1.18 _ZN18NxsNCLAPIExceptionD0Ev@Base 2.1.18 - _ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18 - _ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18 _ZN18NxsX_UnexpectedEOFC1ER8NxsToken@Base 2.1.18 _ZN18NxsX_UnexpectedEOFC2ER8NxsToken@Base 2.1.18 _ZN18NxsX_UnexpectedEOFD0Ev@Base 2.1.18 - _ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18 - _ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18 - _ZN19CodonRecodingStructD1Ev@Base 2.1.18 - _ZN19CodonRecodingStructD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN19CodonRecodingStructD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN19CodonRecodingStructD2Ev@Base 2.1.18 _ZN19NxsAssumptionsBlock10AddCodeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN19NxsAssumptionsBlock10ApplyExsetE9NxsString@Base 2.1.18 _ZN19NxsAssumptionsBlock11HandleExSetER8NxsToken@Base 2.1.18 @@ -345,12 +354,12 @@ _ZN19NxsAssumptionsBlockD2Ev@Base 2.1.18 _ZN19NxsDataBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN19NxsDataBlockFactoryD0Ev@Base 2.1.18 - _ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18 - _ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18 _ZN19NxsTaxaBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN19NxsTaxaBlockFactoryD0Ev@Base 2.1.18 - _ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18 - _ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18 _ZN20NxsCXXDiscreteMatrix10InitializeEPK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC1ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC1ERK24NxsCDiscreteMatrixStruct@Base 2.1.18 @@ -359,12 +368,12 @@ _ZN20NxsCloneBlockFactory12AddPrototypeEPK8NxsBlockPKc@Base 2.1.18 _ZN20NxsCloneBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN20NxsCloneBlockFactoryD0Ev@Base 2.1.18 - _ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18 _ZN20NxsCloneBlockFactoryD2Ev@Base 2.1.18 _ZN20NxsTreesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN20NxsTreesBlockFactoryD0Ev@Base 2.1.18 - _ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18 - _ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate13ActivateTaxonEj@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 @@ -378,16 +387,21 @@ _ZN21NxsTaxaBlockSurrogate21HandleLinkTaxaCommandER8NxsToken@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate30CopyTaxaBlockSurrogateContentsERKS_@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate32SurrogateSwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 - _ZN22NxsFullTreeDescriptionD1Ev@Base 2.1.18 - _ZN22NxsFullTreeDescriptionD2Ev@Base 2.1.18 + _ZN21NxsTaxaBlockSurrogateD0Ev@Base 2.1.21+git20180827.c71b264-1 + _ZN21NxsTaxaBlockSurrogateD2Ev@Base 2.1.21+git20180827.c71b264-1 + _ZN22NxsFullTreeDescriptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_i@Base 2.1.21+git20180827.c71b264-1 + _ZN22NxsFullTreeDescriptionC2ERKS_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN22NxsFullTreeDescriptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN22NxsFullTreeDescriptionD2Ev@Base 2.1.18 _ZN22NxsGeneticCodesManagerC1Ev@Base 2.1.18 _ZN22NxsGeneticCodesManagerC2Ev@Base 2.1.18 _ZN23NxsLabelToIndicesMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper18GetIndicesFromSetsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper25allowNumberAsIndexPlusOneE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper27GetIndicesFromSetOrAsNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEEjPKc@Base 2.1.18 - _ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18 - _ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18 + _ZN23NxsLabelToIndicesMapperD2Ev@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlock14AddAssociationEjRKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN23NxsTaxaAssociationBlock17HandleTaxaCommandER8NxsToken@Base 2.1.18 _ZN23NxsTaxaAssociationBlock17SetFirstTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 @@ -398,12 +412,12 @@ _ZN23NxsTaxaAssociationBlockC1Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockC2Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockD0Ev@Base 2.1.18 - _ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockD2Ev@Base 2.1.18 _ZN24NxsDistancesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN24NxsDistancesBlockFactoryD0Ev@Base 2.1.18 - _ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18 - _ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18 _ZN24NxsTransformationManager10AddIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK16NxsIntStepMatrix@Base 2.1.18 _ZN24NxsTransformationManager10AddTypeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN24NxsTransformationManager11AddRealTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17NxsRealStepMatrix@Base 2.1.18 @@ -415,28 +429,29 @@ _ZN24NxsTransformationManager17GetWeightForIndexERKNSt7__cxx114listISt4pairIiSt3setIjSt4lessIjESaIjEEESaIS8_EEEj@Base 2.1.18 _ZN24NxsTransformationManager18SetDefaultTypeNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN24NxsTransformationManager5ResetEv@Base 2.1.18 - _ZN24NxsTransformationManagerD1Ev@Base 2.1.18 + _ZN24NxsTransformationManagerC2Ev@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24NxsTransformationManagerD1Ev@Base 2.1.18 _ZN24NxsTransformationManagerD2Ev@Base 2.1.18 _ZN24NxsUnalignedBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN24NxsUnalignedBlockFactoryD0Ev@Base 2.1.18 - _ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18 - _ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18 _ZN24WtSetVectorItemValidator7convertB5cxx11ER8NxsToken@Base 2.1.18 _ZN24WtSetVectorItemValidatorD0Ev@Base 2.1.18 - _ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18 - _ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18 _ZN25ExceptionRaisingNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 _ZN25ExceptionRaisingNxsReader12ClearContentEv@Base 2.1.18 _ZN25ExceptionRaisingNxsReader13SkippingBlockE9NxsString@Base 2.1.18 _ZN25ExceptionRaisingNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18 _ZN25ExceptionRaisingNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 _ZN25ExceptionRaisingNxsReaderD0Ev@Base 2.1.18 - _ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18 - _ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18 _ZN25NxsCharactersBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN25NxsCharactersBlockFactoryD0Ev@Base 2.1.18 - _ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18 - _ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18 _ZN25NxsConversionOutputRecord20writeNameTranslationESt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_ESaIS8_EEPK15NxsTaxaBlockAPI@Base 2.1.18 _ZN25NxsConversionOutputRecord31writeTaxonNameTranslationStreamERSoRKSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ESaIS9_EEPK15NxsTaxaBlockAPI@Base 2.1.18 _ZN25NxsConversionOutputRecord32getUniqueFilenameWithLowestIndexB5cxx11EPKc@Base 2.1.18 @@ -450,33 +465,34 @@ _ZN25NxsDiscreteDatatypeMapper38StateCodeForNexusPossibleMultiStateSetEcRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEER8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18 - _ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2ERKS_@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2Ev@Base 2.1.18 - _ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperD2Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperaSERKS_@Base 2.1.18 + _ZN25NxsSetVectorItemValidatorD2Ev@Base 2.1.21+git20180827.c71b264-1 _ZN25NxsStoreTokensBlockReader11ReadCommandER8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader16CanReadBlockTypeERK8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader4ReadER8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader5ResetEv@Base 2.1.18 - (optional)_ZN25NxsStoreTokensBlockReaderC1ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZN25NxsStoreTokensBlockReaderC1ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 2.1.18 (optional)_ZN25NxsStoreTokensBlockReaderC2ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 2.1.18 _ZN25NxsStoreTokensBlockReaderD0Ev@Base 2.1.18 - _ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18 _ZN25NxsStoreTokensBlockReaderD2Ev@Base 2.1.18 - _ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18 _ZN25NxsUnimplementedExceptionC2E9NxsString@Base 2.1.18 _ZN25NxsUnimplementedExceptionD0Ev@Base 2.1.18 - _ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18 - _ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18 _ZN26NxsAssumptionsBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN26NxsAssumptionsBlockFactoryD0Ev@Base 2.1.18 - _ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18 - _ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18 _ZN27DefaultErrorReportNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 _ZN27DefaultErrorReportNxsReader13EnteringBlockE9NxsString@Base 2.1.18 _ZN27DefaultErrorReportNxsReader13SkippingBlockE9NxsString@Base 2.1.18 @@ -484,24 +500,24 @@ _ZN27DefaultErrorReportNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 _ZN27DefaultErrorReportNxsReader9parseFileB5cxx11EPKcPSoS2_bb@Base 2.1.18 _ZN27DefaultErrorReportNxsReaderD0Ev@Base 2.1.18 - _ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18 - _ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18 _ZN27DuplicatedLabelNxsExceptionD0Ev@Base 2.1.18 - _ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18 - _ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactoryD0Ev@Base 2.1.18 - _ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactoryD2Ev@Base 2.1.18 _ZN30NxsTaxaAssociationBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN30NxsTaxaAssociationBlockFactoryD0Ev@Base 2.1.18 - _ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18 - _ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionD0Ev@Base 2.1.18 - _ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18 - _ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18 _ZN8NxsBlock11SkipCommandER8NxsToken@Base 2.1.18 _ZN8NxsBlock14HandleEndblockER8NxsToken@Base 2.1.18 _ZN8NxsBlock15SkippingCommandE9NxsString@Base 2.1.18 @@ -529,6 +545,7 @@ _ZN8NxsBlockD1Ev@Base 2.1.18 _ZN8NxsBlockD2Ev@Base 2.1.18 _ZN8NxsToken10GetCommentEv@Base 2.1.18 + _ZN8NxsToken11GetNextCharEv@Base 2.1.21+git20180827.c71b264-1 _ZN8NxsToken11NeedsQuotesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN8NxsToken12AbbreviationE9NxsString@Base 2.1.18 _ZN8NxsToken12GetNextTokenEv@Base 2.1.18 @@ -542,6 +559,7 @@ _ZN8NxsToken21UseNewickTokenizationEb@Base 2.1.18 _ZN8NxsToken22GetCurlyBracketedTokenEv@Base 2.1.18 _ZN8NxsToken26ParseAsSimpleKeyValuePairsB5cxx11ERKSt6vectorI17ProcessedNxsTokenSaIS1_EEPKc@Base 2.1.18 + _ZN8NxsToken28ProcessAsSimpleKeyValuePairsB5cxx11EPKc@Base 2.1.21+git20180827.c71b264-1 _ZN8NxsToken40GetQuotedWithInternalSingleQuotesDoubledEv@Base 2.1.21+git20171002.4becff7 _ZN8NxsToken6BeginsE9NxsStringb@Base 2.1.18 _ZN8NxsToken7ToUpperEv@Base 2.1.18 @@ -568,7 +586,7 @@ _ZN9NxsReader13SkippingBlockE9NxsString@Base 2.1.18 _ZN9NxsReader14BlockListEmptyEv@Base 2.1.18 _ZN9NxsReader14NCLHomePageURLEv@Base 2.1.18 - _ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18 _ZN9NxsReader14ReadFilestreamERSi@Base 2.1.18 _ZN9NxsReader15ExecuteStartingEv@Base 2.1.18 _ZN9NxsReader15ExecuteStoppingEv@Base 2.1.18 @@ -650,17 +668,20 @@ _ZN9NxsString8to_lowerERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString8to_upperERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString9ShortenToEj@Base 2.1.18 + _ZN9NxsString9get_upperERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.21+git20180827.c71b264-1 _ZN9NxsString9to_doubleEPKcPd@Base 2.1.18 - _ZN9NxsStringC1EPKc@Base 2.1.18 - _ZN9NxsStringC1ERKS_@Base 2.1.18 - _ZN9NxsStringC2EPKc@Base 2.1.18 - _ZN9NxsStringC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringC1EPKc@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringC2EPKc@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringC2ERKS_@Base 2.1.18 _ZN9NxsStringpLEPKc@Base 2.1.18 _ZN9NxsStringpLEc@Base 2.1.18 _ZN9NxsStringpLEd@Base 2.1.18 - _ZN9NxsStringpLEi@Base 2.1.18 - _ZN9NxsStringpLEj@Base 2.1.18 - _ZN9NxsStringpLEl@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringpLEi@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringpLEj@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZN9NxsStringpLEl@Base 2.1.18 + _ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeISt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE16NxsIntStepMatrixEEE7destroyISB_EEvPT_@Base 2.1.21+git20180827.c71b264-1 + _ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeISt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE17NxsRealStepMatrixEEE7destroyISB_EEvPT_@Base 2.1.21+git20180827.c71b264-1 _ZNK12NxsDataBlock5CloneEv@Base 2.1.18 _ZNK12NxsException4whatEv@Base 2.1.18 _ZNK12NxsException8nxs_whatEv@Base 2.1.18 @@ -738,6 +759,7 @@ _ZNK17NxsUnalignedBlock23WriteStatesForMatrixRowERSoj@Base 2.1.18 _ZNK17NxsUnalignedBlock5CloneEv@Base 2.1.18 _ZNK17NxsUnalignedBlock6ReportERSo@Base 2.1.18 + _ZNK17ProcessedNxsToken12WriteAsNexusERSo@Base 2.1.21+git20180827.c71b264-1 _ZNK17PublicNexusReader12GetTaxaBlockEj@Base 2.1.18 _ZNK17PublicNexusReader13GetTreesBlockEPK12NxsTaxaBlockj@Base 2.1.18 _ZNK17PublicNexusReader15GetUnknownBlockEj@Base 2.1.18 @@ -856,8 +878,9 @@ _ZNK25NxsDiscreteDatatypeMapper13IsPolymorphicEi@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper17PositionInSymbolsEc@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper17ValidateStateCodeEi@Base 2.1.18 - _ZNK25NxsDiscreteDatatypeMapper18GetStateSetForCodeEi@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNK25NxsDiscreteDatatypeMapper18GetStateSetForCodeEi@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper18ValidateStateIndexEi@Base 2.1.18 + _ZNK25NxsDiscreteDatatypeMapper21GetSymbolsWithGapCharB5cxx11Ev@Base 2.1.21+git20180827.c71b264-1 _ZNK25NxsDiscreteDatatypeMapper21StateCodeForNexusCharEcP8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper22BuildStateSubsetMatrixEv@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper22DebugWriteMapperFieldsERSo@Base 2.1.18 @@ -897,7 +920,7 @@ _ZNK8NxsBlock6ReportERSo@Base 2.1.18 _ZNK8NxsBlock7IsEmptyEv@Base 2.1.18 _ZNK8NxsBlock9IsEnabledEv@Base 2.1.18 - _ZNK8NxsToken15GetFilePositionEv@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNK8NxsToken15GetFilePositionEv@Base 2.1.18 _ZNK9NxsReader13statusMessageERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK9NxsReader16GetBlockPriorityEP8NxsBlock@Base 2.1.18 _ZNK9NxsReader20GetAllTitlesForBlockB5cxx11EPK8NxsBlock@Base 2.1.18 @@ -914,281 +937,430 @@ _ZNK9NxsString21EqualsCaseInsensitiveERKS_@Base 2.1.18 _ZNK9NxsString7IsALongEv@Base 2.1.18 _ZNK9NxsString9IsADoubleEv@Base 2.1.18 - _ZNKSt5ctypeIcE8do_widenEc@Base 2.1.18 - _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE4findERKS5_@Base 2.1.18 - (optional)_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE4findERS7_@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNKSt5ctypeIcE8do_widenEc@Base 2.1.18 + _ZNKSt6vectorIbSaIbEE4sizeEv@Base 2.1.21+git20180827.c71b264-1 + _ZNKSt8_Rb_treeI9NxsStringSt4pairIKS0_St3setIjSt4lessIjESaIjEEESt10_Select1stIS8_ES4_IS0_ESaIS8_EE4findERS2_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE4findERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE4findERS7_@Base 2.1.21+git20171002.4becff7 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IS5_St3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE4findERS7_@Base 2.1.18 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.1.18 (optional)_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt11_Deque_baseIjSaIjEED1Ev@Base 2.1.21+git20171002.4becff7 - (optional)_ZNSt11_Deque_baseIjSaIjEED2Ev@Base 2.1.21+git20171002.4becff7 + _ZNSt11_Deque_baseIP13NxsSimpleNodeSaIS1_EE17_M_initialize_mapEm@Base 2.1.21+git20180827.c71b264-1 + _ZNSt11_Deque_baseIPK13NxsSimpleNodeSaIS2_EE17_M_initialize_mapEm@Base 2.1.21+git20180827.c71b264-1 + _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNSt11_Deque_baseIjSaIjEED1Ev@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNSt11_Deque_baseIjSaIjEED2Ev@Base 2.1.21+git20171002.4becff7 _ZNSt11__copy_moveILb0ELb0ESt26random_access_iterator_tagE8__copy_mIPPKcSt20back_insert_iteratorISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISD_EEEEET0_T_SI_SH_@Base 2.1.18 - _ZNSt12_Destroy_auxILb0EE9__destroyIPSt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEEEEvT_SB_@Base 2.1.18 - _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt12_Destroy_auxILb0EE9__destroyIPSt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEEEEvT_SB_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.1.18 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPK10NxsCommentSt6vectorIS4_SaIS4_EEEEPS4_EET0_T_SD_SC_@Base 2.1.21+git20180827.c71b264-1 _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPK17ProcessedNxsTokenSt6vectorIS4_SaIS4_EEEEPS4_EET0_T_SD_SC_@Base 2.1.18 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPK22NxsFullTreeDescriptionSt6vectorIS4_SaIS4_EEEEPS4_EET0_T_SD_SC_@Base 2.1.21+git20180827.c71b264-1 _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPK23NxsDiscreteStateSetInfoSt6vectorIS4_SaIS4_EEEEPS4_EET0_T_SD_SC_@Base 2.1.18 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPK9NxsStringSt6vectorIS4_SaIS4_EEEEPS4_EET0_T_SD_SC_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIdSaIdEESt4lessISA_ESaISt4pairIKSA_SD_EEESB_ISK_SaISK_EEEEPSK_EET0_T_SS_SR_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt3setIiSt4lessIiESaIiEESt6vectorIS8_SaIS8_EEEEPS8_EET0_T_SH_SG_@Base 2.1.21+git20180827.c71b264-1 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_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE7_M_copyINSE_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEaSERKSE_@Base 2.1.21+git20171002.4becff7 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESR_IJEEEEEvPSt13_Rb_tree_nodeISG_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESR_IJEEEEESt17_Rb_tree_iteratorISG_ESt23_Rb_tree_const_iteratorISG_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISG_ERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE8_M_eraseEPSt13_Rb_tree_nodeISG_E@Base 2.1.18 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESL_IJEEEEEvPSt13_Rb_tree_nodeISA_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESL_IJEEEEESt17_Rb_tree_iteratorISA_ESt23_Rb_tree_const_iteratorISA_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISA_ERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE8_M_eraseEPSt13_Rb_tree_nodeISA_E@Base 2.1.18 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESO_IJEEEEEvPSt13_Rb_tree_nodeISD_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESO_IJEEEEESt17_Rb_tree_iteratorISD_ESt23_Rb_tree_const_iteratorISD_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISD_ERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE8_M_eraseEPSt13_Rb_tree_nodeISD_E@Base 2.1.18 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESN_IJEEEEEvPSt13_Rb_tree_nodeISC_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESN_IJEEEEESt17_Rb_tree_iteratorISC_ESt23_Rb_tree_const_iteratorISC_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISC_ERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE4findERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE8_M_eraseEPSt13_Rb_tree_nodeISC_E@Base 2.1.18 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESN_IJEEEEEvPSt13_Rb_tree_nodeISD_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESN_IJEEEEESt17_Rb_tree_iteratorISD_ESt23_Rb_tree_const_iteratorISD_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISD_ERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE8_M_eraseEPSt13_Rb_tree_nodeISD_E@Base 2.1.18 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEEvPSt13_Rb_tree_nodeISB_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE20_Reuse_or_alloc_nodeclIRKSB_EEPSt13_Rb_tree_nodeISB_EOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE7_M_copyINSH_11_Alloc_nodeEEEPSt13_Rb_tree_nodeISB_EPKSL_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 @@ -1196,100 +1368,139 @@ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EEaSERKSH_@Base 2.1.18 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS8_ESG_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE17_M_construct_nodeIJRKS8_EEEvPSt13_Rb_tree_nodeIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEEvPSt13_Rb_tree_nodeIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 2.1.21+git20180827.c71b264-1 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 2.1.18 - _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE7_M_copyINSE_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEaSERKSE_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeIP8NxsBlockS1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE16_M_insert_uniqueIRKS1_EESt4pairISt17_Rb_tree_iteratorIS1_EbEOT_@Base 2.1.21+git20171002.4becff7 - _ZNSt8_Rb_treeIP8NxsBlockS1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE24_M_get_insert_unique_posERKS1_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNSt8_Rb_treeIP8NxsBlockS1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE16_M_insert_uniqueIRKS1_EESt4pairISt17_Rb_tree_iteratorIS1_EbEOT_@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIP8NxsBlockS1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE24_M_get_insert_unique_posERKS1_@Base 2.1.18 _ZNSt8_Rb_treeIP8NxsBlockS1_St9_IdentityIS1_ESt4lessIS1_ESaIS1_EE8_M_eraseEPSt13_Rb_tree_nodeIS1_E@Base 2.1.18 - _ZNSt8_Rb_treeIP8NxsBlockSt4pairIKS1_iESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE24_M_get_insert_unique_posERS3_@Base 2.1.18 + _ZNSt8_Rb_treeIP8NxsBlockSt4pairIKS1_iESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS3_EESF_IJEEEEESt17_Rb_tree_iteratorIS4_ESt23_Rb_tree_const_iteratorIS4_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIP8NxsBlockSt4pairIKS1_iESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE24_M_get_insert_unique_posERS3_@Base 2.1.18 (optional)_ZNSt8_Rb_treeIP8NxsBlockSt4pairIKS1_iESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS4_ERS3_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIP8NxsBlockSt4pairIKS1_iESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE5eraseERS3_@Base 2.1.18 _ZNSt8_Rb_treeIP8NxsBlockSt4pairIKS1_iESt10_Select1stIS4_ESt4lessIS1_ESaIS4_EE8_M_eraseEPSt13_Rb_tree_nodeIS4_E@Base 2.1.18 - _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjdSt4lessIjESaIS3_IKjdEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 + _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjdSt4lessIjESaIS3_IKjdEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS4_EESM_IJEEEEESt17_Rb_tree_iteratorISC_ESt23_Rb_tree_const_iteratorISC_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjdSt4lessIjESaIS3_IKjdEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 (optional)_ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjdSt4lessIjESaIS3_IKjdEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISC_ERS4_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjdSt4lessIjESaIS3_IKjdEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE8_M_eraseEPSt13_Rb_tree_nodeISC_E@Base 2.1.18 - _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjiSt4lessIjESaIS3_IKjiEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 + _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjiSt4lessIjESaIS3_IKjiEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS4_EESM_IJEEEEESt17_Rb_tree_iteratorISC_ESt23_Rb_tree_const_iteratorISC_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjiSt4lessIjESaIS3_IKjiEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 (optional)_ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjiSt4lessIjESaIS3_IKjiEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISC_ERS4_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIPK13NxsSimpleNodeSt4pairIKS2_St3mapIjiSt4lessIjESaIS3_IKjiEEEESt10_Select1stISC_ES6_IS2_ESaISC_EE8_M_eraseEPSt13_Rb_tree_nodeISC_E@Base 2.1.18 - (optional)_ZNSt8_Rb_treeIPK15NxsTaxaBlockAPISt4pairIKS2_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stISB_ESt4lessIS2_ESaISB_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 + _ZNSt8_Rb_treeIPK15NxsTaxaBlockAPISt4pairIKS2_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stISB_ESt4lessIS2_ESaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS4_EESM_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNSt8_Rb_treeIPK15NxsTaxaBlockAPISt4pairIKS2_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stISB_ESt4lessIS2_ESaISB_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 _ZNSt8_Rb_treeIPK15NxsTaxaBlockAPISt4pairIKS2_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stISB_ESt4lessIS2_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS4_@Base 2.1.18 _ZNSt8_Rb_treeIPK15NxsTaxaBlockAPISt4pairIKS2_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stISB_ESt4lessIS2_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.1.18 - _ZNSt8_Rb_treeIPK25NxsDiscreteDatatypeMapperS2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE16_M_insert_uniqueIS2_EESt4pairISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIPK25NxsDiscreteDatatypeMapperS2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE16_M_insert_uniqueIS2_EESt4pairISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.1.18 _ZNSt8_Rb_treeIPK25NxsDiscreteDatatypeMapperS2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.1.18 - _ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 + _ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS4_EESP_IJEEEEESt17_Rb_tree_iteratorISE_ESt23_Rb_tree_const_iteratorISE_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE24_M_get_insert_unique_posERS4_@Base 2.1.18 (optional)_ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISE_ERS4_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE8_M_eraseEPSt13_Rb_tree_nodeISE_E@Base 2.1.18 - _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE16_M_insert_uniqueISt17_Rb_tree_iteratorIS3_EEEvT_SD_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE17_M_construct_nodeIJRKS3_EEEvPSt13_Rb_tree_nodeIS3_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE17_M_construct_nodeIJRS3_EEEvPSt13_Rb_tree_nodeIS3_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE20_Reuse_or_alloc_nodeclIRKS3_EEPSt13_Rb_tree_nodeIS3_EOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOcEESE_IJEEEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESE_IJEEEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERS1_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE7_M_copyINS9_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS3_EPKSD_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE7_M_copyINS9_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS3_EPKSD_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE8_M_eraseEPSt13_Rb_tree_nodeIS3_E@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EEaSERKS9_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE16_M_insert_uniqueIRKcEESt4pairISt17_Rb_tree_iteratorIcEbEOT_@Base 2.1.21+git20171002.4becff7 - _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE24_M_get_insert_unique_posERKc@Base 2.1.18 - _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIcERKc@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE16_M_insert_uniqueIRKcEESt4pairISt17_Rb_tree_iteratorIcEbEOT_@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE24_M_get_insert_unique_posERKc@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIcERKc@Base 2.1.18 _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE8_M_eraseEPSt13_Rb_tree_nodeIcE@Base 2.1.18 - (optional)_ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# (optional)_ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.1.18 _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 - _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 (optional)_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIRKiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE24_M_get_insert_unique_posERKi@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIRKiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE24_M_get_insert_unique_posERKi@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIiERKi@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE7_M_copyINS5_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIiEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE7_M_copyINS5_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIiEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE8_M_eraseEPSt13_Rb_tree_nodeIiE@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC1ERKS5_@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC2ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC1ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC2ERKS5_@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEaSERKS5_@Base 2.1.18 - _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE17_M_construct_nodeIJRKS8_EEEvPSt13_Rb_tree_nodeIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOjEESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE7_M_copyINSE_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EEaSERKSE_@Base 2.1.18 - _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjdSt4lessIjESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjdSt4lessIjESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESH_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjdSt4lessIjESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjdSt4lessIjESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjdSt4lessIjESaIS0_IS1_dEEEESt10_Select1stIS8_ES4_SaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 - _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjiSt4lessIjESaIS0_IS1_iEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjiSt4lessIjESaIS0_IS1_iEEEESt10_Select1stIS8_ES4_SaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESH_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjiSt4lessIjESaIS0_IS1_iEEEESt10_Select1stIS8_ES4_SaIS8_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjiSt4lessIjESaIS0_IS1_iEEEESt10_Select1stIS8_ES4_SaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIjSt4pairIKjSt3mapIjiSt4lessIjESaIS0_IS1_iEEEESt10_Select1stIS8_ES4_SaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EE17_M_construct_nodeIJRKS7_EEEvPSt13_Rb_tree_nodeIS7_EDpOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EE20_Reuse_or_alloc_nodeclIRKS7_EEPSt13_Rb_tree_nodeIS7_EOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESG_IJEEEEESt17_Rb_tree_iteratorIS7_ESt23_Rb_tree_const_iteratorIS7_EDpOT_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS7_ERS1_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EE7_M_copyINSB_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS7_EPKSF_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EE8_M_eraseEPSt13_Rb_tree_nodeIS7_E@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt3setIjSt4lessIjESaIjEEESt10_Select1stIS7_ES4_SaIS7_EEaSERKSB_@Base 2.1.18 - _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE20_Reuse_or_alloc_nodeclIRKS6_EEPSt13_Rb_tree_nodeIS6_EOT_@Base 2.1.21+git20180827.c71b264-1 + _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOjEESH_IJEEEEESt17_Rb_tree_iteratorIS6_ESt23_Rb_tree_const_iteratorIS6_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS6_ERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE7_M_copyINSC_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS6_EPKSG_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE8_M_eraseEPSt13_Rb_tree_nodeIS6_E@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EEaSERKSC_@Base 2.1.18 - _ZNSt8_Rb_treeIjSt4pairIKjdESt10_Select1stIS2_ESt4lessIjESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjdESt10_Select1stIS2_ESt4lessIjESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.1.21+git20180827.c71b264-1 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjSt4pairIKjdESt10_Select1stIS2_ESt4lessIjESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjdESt10_Select1stIS2_ESt4lessIjESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.1.21+git20180827.c71b264-1 _ZNSt8_Rb_treeIjSt4pairIKjdESt10_Select1stIS2_ESt4lessIjESaIS2_EE7_M_copyINS8_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 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_ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE7_M_copyINS8_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EEaSERKS8_@Base 2.1.21+git20171002.4becff7 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueISt23_Rb_tree_const_iteratorIjEEEvT_S9_@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE24_M_get_insert_unique_posERKj@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueISt23_Rb_tree_const_iteratorIjEEEvT_S9_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE24_M_get_insert_unique_posERKj@Base 2.1.18 (optional)_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIjERKj@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE7_M_copyINS5_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIjEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE7_M_copyINS5_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIjEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE8_M_eraseEPSt13_Rb_tree_nodeIjE@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC1ERKS5_@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC2ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC1ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC2ERKS5_@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEaSERKS5_@Base 2.1.18 (optional)_ZSt11__set_unionISt23_Rb_tree_const_iteratorIiES1_St15insert_iteratorISt3setIiSt4lessIiESaIiEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SD_T0_SE_SC_T2_@Base 2.1.18 + _ZSt11__set_unionISt23_Rb_tree_const_iteratorIjES1_St15insert_iteratorISt3setIjSt4lessIjESaIjEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SD_T0_SE_SC_T2_@Base 2.1.21+git20180827.c71b264-1 + _ZSt18__set_intersectionISt23_Rb_tree_const_iteratorIiES1_St15insert_iteratorISt3setIiSt4lessIiESaIiEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SD_T0_SE_SC_T2_@Base 2.1.21+git20180827.c71b264-1 + _ZSt18__set_intersectionISt23_Rb_tree_const_iteratorIiES1_St20back_insert_iteratorISt6vectorIiSaIiEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SB_T0_SC_SA_T2_@Base 2.1.21+git20180827.c71b264-1 + _ZSt18__set_intersectionISt23_Rb_tree_const_iteratorIjES1_St20back_insert_iteratorISt6vectorIjSaIjEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SB_T0_SC_SA_T2_@Base 2.1.21+git20180827.c71b264-1 + _ZSt4copyISt20_List_const_iteratorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt20back_insert_iteratorISt6vectorIS6_SaIS6_EEEET0_T_SE_SD_@Base 2.1.21+git20180827.c71b264-1 + _ZSt4copyISt23_Rb_tree_const_iteratorIiESt15insert_iteratorISt3setIiSt4lessIiESaIiEEEET0_T_SA_S9_@Base 2.1.21+git20180827.c71b264-1 + _ZSt4copyISt23_Rb_tree_const_iteratorIjESt15insert_iteratorISt3setIjSt4lessIjESaIjEEEET0_T_SA_S9_@Base 2.1.21+git20180827.c71b264-1 _ZTI12NxsDataBlock@Base 2.1.18 _ZTI12NxsException@Base 2.1.18 _ZTI12NxsTaxaBlock@Base 2.1.18 @@ -1386,7 +1597,7 @@ _ZTV13NxsTreesBlock@Base 2.1.18 _ZTV15NxsTaxaBlockAPI@Base 2.1.18 _ZTV16BogusToIndMapper@Base 2.1.18 - _ZTV16NxsTreesBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZTV16NxsTreesBlockAPI@Base 2.1.18 _ZTV17NxsDistancesBlock@Base 2.1.18 _ZTV17NxsUnalignedBlock@Base 2.1.18 _ZTV17PublicNexusReader@Base 2.1.18 @@ -1398,9 +1609,9 @@ _ZTV19NxsTaxaBlockFactory@Base 2.1.18 _ZTV20NxsCloneBlockFactory@Base 2.1.18 _ZTV20NxsTreesBlockFactory@Base 2.1.18 - _ZTV21NxsCharactersBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZTV21NxsCharactersBlockAPI@Base 2.1.18 _ZTV21NxsTaxaBlockSurrogate@Base 2.1.18 - _ZTV22NxsAssumptionsBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZTV22NxsAssumptionsBlockAPI@Base 2.1.18 _ZTV23NxsTaxaAssociationBlock@Base 2.1.18 _ZTV24NxsDistancesBlockFactory@Base 2.1.18 _ZTV24NxsUnalignedBlockFactory@Base 2.1.18 @@ -1410,7 +1621,7 @@ _ZTV25NxsStoreTokensBlockReader@Base 2.1.18 _ZTV25NxsUnimplementedException@Base 2.1.18 _ZTV26NxsAssumptionsBlockFactory@Base 2.1.18 - _ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20180827.c71b264-1# _ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18 _ZTV27DefaultErrorReportNxsReader@Base 2.1.18 _ZTV27DuplicatedLabelNxsException@Base 2.1.18 _ZTV28NxsDefaultPublicBlockFactory@Base 2.1.18 @@ -1430,6 +1641,8 @@ _ZThn192_N13NxsTreesBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZThn192_N13NxsTreesBlockD0Ev@Base 2.1.18 _ZThn192_N13NxsTreesBlockD1Ev@Base 2.1.18 + _ZThn192_N15NxsTaxaBlockAPID0Ev@Base 2.1.21+git20180827.c71b264-1 + _ZThn192_N15NxsTaxaBlockAPID1Ev@Base 2.1.21+git20180827.c71b264-1 _ZThn192_N17NxsDistancesBlockD0Ev@Base 2.1.18 _ZThn192_N17NxsDistancesBlockD1Ev@Base 2.1.18 _ZThn192_N17NxsUnalignedBlockD0Ev@Base 2.1.18 dh_makeshlibs: failing due to earlier errors make: *** [debian/rules:8: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-01-09T21:26:39Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 333476 Build-Time: 114 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: libncl_2.1.21+git20180827.c71b264-1 Machine Architecture: amd64 Package: libncl Package-Time: 138 Source-Version: 2.1.21+git20180827.c71b264-1 Space: 333476 Status: attempted Version: 2.1.21+git20180827.c71b264-1 -------------------------------------------------------------------------------- Finished at 2019-01-09T21:26:39Z Build needed 00:02:18, 333476k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 138.733868788s DC-Time-Estimation: 138.733868788 versus expected 344 (r/m: 1.4795675562516628 ; m: 138.733868788)