DC-Build-Header: pykdtree 1.3.1-2 / 2019-01-09 22:25:52 +0000 DC-Task: type:rebuild-binarch-only source:pykdtree version:1.3.1-2 chroot:unstable esttime:54 logfile:/tmp/pykdtree_1.3.1-2_unstable_clang7.log modes:clang7:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang7 pykdtree_1.3.1-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-1-99.eu-central-1.compute.internal +==============================================================================+ | pykdtree 1.3.1-2 (amd64) Wed, 09 Jan 2019 22:25:52 +0000 | +==============================================================================+ Package: pykdtree Version: 1.3.1-2 Source Version: 1.3.1-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-8f579772-5c2f-4e87-bf94-6b7bf7cc03c3' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang7 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=7 + echo 'Install of clang-7' Install of clang-7 + apt-get update Get:1 http://127.0.0.1:9999/debian sid InRelease [238 kB] Get:2 http://127.0.0.1:9999/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:5 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-2026.40.pdiff [16.8 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-2026.40.pdiff [32.0 kB] Get:5 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-2026.40.pdiff [16.8 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-2026.40.pdiff [32.0 kB] Get:8 http://127.0.0.1:9999/debian sid/main Translation-en [6274 kB] Fetched 6681 kB in 2s (3294 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-7 libomp-7-dev libobjc-8-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-7-dev libclang1-7 libedit2 libgc1c2 libllvm7 libobjc4 libomp5-7 Suggested packages: clang-7-doc libomp-7-doc Recommended packages: llvm-7-dev python The following NEW packages will be installed: clang-7 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-7-dev libclang1-7 libedit2 libgc1c2 libllvm7 libobjc-8-dev libobjc4 libomp-7-dev libomp5-7 0 upgraded, 14 newly installed, 0 to remove and 5 not upgraded. Need to get 34.5 MB of archives. After this operation, 185 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libllvm7 amd64 1:7.0.1-4 [13.0 MB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libobjc4 amd64 8.2.0-14 [50.4 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 libobjc-8-dev amd64 8.2.0-14 [225 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libc6-i386 amd64 2.28-4 [2873 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 lib32gcc1 amd64 1:8.2.0-14 [47.9 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 lib32stdc++6 amd64 8.2.0-14 [406 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 libclang-common-7-dev amd64 1:7.0.1-4 [3155 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 libclang1-7 amd64 1:7.0.1-4 [5991 kB] Get:12 http://127.0.0.1:9999/debian sid/main amd64 clang-7 amd64 1:7.0.1-4 [7887 kB] Get:13 http://127.0.0.1:9999/debian sid/main amd64 libomp5-7 amd64 1:7.0.1-4 [318 kB] Get:14 http://127.0.0.1:9999/debian sid/main amd64 libomp-7-dev amd64 1:7.0.1-4 [57.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 34.5 MB in 1s (40.7 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11802 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../02-libllvm7_1%3a7.0.1-4_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-4) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../03-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../04-libobjc4_8.2.0-14_amd64.deb ... Unpacking libobjc4:amd64 (8.2.0-14) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../05-libobjc-8-dev_8.2.0-14_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.2.0-14) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../06-libc6-i386_2.28-4_amd64.deb ... Unpacking libc6-i386 (2.28-4) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../07-lib32gcc1_1%3a8.2.0-14_amd64.deb ... Unpacking lib32gcc1 (1:8.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../08-lib32stdc++6_8.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (8.2.0-14) ... Selecting previously unselected package libclang-common-7-dev. Preparing to unpack .../09-libclang-common-7-dev_1%3a7.0.1-4_amd64.deb ... Unpacking libclang-common-7-dev (1:7.0.1-4) ... Selecting previously unselected package libclang1-7:amd64. Preparing to unpack .../10-libclang1-7_1%3a7.0.1-4_amd64.deb ... Unpacking libclang1-7:amd64 (1:7.0.1-4) ... Selecting previously unselected package clang-7. Preparing to unpack .../11-clang-7_1%3a7.0.1-4_amd64.deb ... Unpacking clang-7 (1:7.0.1-4) ... Selecting previously unselected package libomp5-7:amd64. Preparing to unpack .../12-libomp5-7_1%3a7.0.1-4_amd64.deb ... Unpacking libomp5-7:amd64 (1:7.0.1-4) ... Selecting previously unselected package libomp-7-dev. Preparing to unpack .../13-libomp-7-dev_1%3a7.0.1-4_amd64.deb ... Unpacking libomp-7-dev (1:7.0.1-4) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libc6-i386 (2.28-4) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libomp5-7:amd64 (1:7.0.1-4) ... Processing triggers for libc-bin (2.28-4) ... Setting up libomp-7-dev (1:7.0.1-4) ... Setting up lib32gcc1 (1:8.2.0-14) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libobjc4:amd64 (8.2.0-14) ... Setting up libobjc-8-dev:amd64 (8.2.0-14) ... Setting up libllvm7:amd64 (1:7.0.1-4) ... Setting up libclang1-7:amd64 (1:7.0.1-4) ... Setting up lib32stdc++6 (8.2.0-14) ... Setting up libclang-common-7-dev (1:7.0.1-4) ... Setting up clang-7 (1:7.0.1-4) ... Processing triggers for libc-bin (2.28-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-7 g++-4.6 + ln -s clang-7 gcc-4.6 + ln -s clang-7 cpp-4.6 + ln -s clang-7 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-7 g++-4.7 + ln -s clang-7 gcc-4.7 + ln -s clang-7 cpp-4.7 + ln -s clang-7 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-7 g++-4.8 + ln -s clang-7 gcc-4.8 + ln -s clang-7 cpp-4.8 + ln -s clang-7 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-7 g++-4.9 + ln -s clang-7 gcc-4.9 + ln -s clang-7 cpp-4.9 + ln -s clang-7 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-7 g++-5 + ln -s clang-7 gcc-5 + ln -s clang-7 cpp-5 + ln -s clang-7 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-7 g++-6 + ln -s clang-7 gcc-6 + ln -s clang-7 cpp-6 + ln -s clang-7 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-7 g++-7 + ln -s clang-7 gcc-7 + ln -s clang-7 cpp-7 + ln -s clang-7 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-7 g++-8 + ln -s clang-7 gcc-8 + ln -s clang-7 cpp-8 + ln -s clang-7 gcc + echo 'gcc-8 hold' + dpkg --set-selections + echo 'g++-8 hold' + dpkg --set-selections + cd - /build/pykdtree-BrjbNi + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang7'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libmpfr6 libpam-modules libpam-modules-bin libpam-runtime libpam0g 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1519 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libpam0g amd64 1.1.8-4 [124 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules-bin amd64 1.1.8-4 [106 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules amd64 1.1.8-4 [305 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libpam-runtime all 1.1.8-4 [211 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [773 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1519 kB in 0s (75.9 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pykdtree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debian-gis-team/pykdtree.git Please use: git clone https://salsa.debian.org/debian-gis-team/pykdtree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 85.4 kB of source archives. Get:1 http://127.0.0.1:9999/debian sid/main pykdtree 1.3.1-2 (dsc) [2205 B] Get:2 http://127.0.0.1:9999/debian sid/main pykdtree 1.3.1-2 (tar) [78.2 kB] Get:3 http://127.0.0.1:9999/debian sid/main pykdtree 1.3.1-2 (diff) [4948 B] Fetched 85.4 kB in 0s (179 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pykdtree-BrjbNi/pykdtree-1.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/pykdtree-BrjbNi' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-o1RciF/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-o1RciF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-o1RciF/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-o1RciF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-o1RciF/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-o1RciF/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-o1RciF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11), dh-python, python-setuptools, python3-setuptools, python-all-dev, python3-all-dev, python-numpy, python3-numpy, python-nose, python3-nose Filtered Build-Depends: debhelper (>= 11), dh-python, python-setuptools, python3-setuptools, python-all-dev, python3-all-dev, python-numpy, python3-numpy, python-nose, python3-nose dpkg-deb: building package 'sbuild-build-depends-pykdtree-dummy' in '/<>/resolver-o1RciF/apt_archive/sbuild-build-depends-pykdtree-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pykdtree-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-o1RciF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-o1RciF/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-o1RciF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-o1RciF/apt_archive ./ Sources [535 B] Get:5 copy:/<>/resolver-o1RciF/apt_archive ./ Packages [621 B] Fetched 2119 B in 0s (0 B/s) Reading package lists... Reading package lists... Install pykdtree build dependencies (apt-based resolver) -------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63 liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-nose python-numpy python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-nose python3-numpy python3-pkg-resources python3-setuptools python3.7 python3.7-dev python3.7-minimal readline-common sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-coverage python-nose-doc gfortran python-pytest python-numpy-dbg python-numpy-doc python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3-pytest python3-numpy-dbg python3.7-venv python3.7-doc readline-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu63 liblapack3 libmagic-mgc libmagic1 libmpdec2 libncurses6 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libreadline7 libsigsegv2 libsqlite3-0 libssl1.1 libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-nose python-numpy python-pkg-resources python-setuptools python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-nose python3-numpy python3-pkg-resources python3-setuptools python3.7 python3.7-dev python3.7-minimal readline-common sbuild-build-depends-pykdtree-dummy sensible-utils 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 122 MB of archives. After this operation, 305 MB of additional disk space will be used. 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http://127.0.0.1:9999/debian sid/main amd64 file amd64 1:5.34-2 [65.8 kB] Get:35 http://127.0.0.1:9999/debian sid/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:36 http://127.0.0.1:9999/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:37 http://127.0.0.1:9999/debian sid/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:38 http://127.0.0.1:9999/debian sid/main amd64 autoconf all 2.69-11 [341 kB] Get:39 http://127.0.0.1:9999/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:40 http://127.0.0.1:9999/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:41 http://127.0.0.1:9999/debian sid/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:42 http://127.0.0.1:9999/debian sid/main amd64 libtool all 2.4.6-6 [547 kB] Get:43 http://127.0.0.1:9999/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:44 http://127.0.0.1:9999/debian sid/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:45 http://127.0.0.1:9999/debian sid/main amd64 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http://127.0.0.1:9999/debian sid/main amd64 python-pkg-resources all 40.6.2-1 [181 kB] Get:80 http://127.0.0.1:9999/debian sid/main amd64 python-nose all 1.3.7-4 [132 kB] Get:81 http://127.0.0.1:9999/debian sid/main amd64 python-numpy amd64 1:1.16.0~rc2-1 [2109 kB] Get:82 http://127.0.0.1:9999/debian sid/main amd64 python-setuptools all 40.6.2-1 [380 kB] Get:83 http://127.0.0.1:9999/debian sid/main amd64 python3-all amd64 3.7.1-3 [1064 B] Get:84 http://127.0.0.1:9999/debian sid/main amd64 python3.7-dev amd64 3.7.2-1 [509 kB] Get:85 http://127.0.0.1:9999/debian sid/main amd64 python3-dev amd64 3.7.1-3 [1260 B] Get:86 http://127.0.0.1:9999/debian sid/main amd64 python3-all-dev amd64 3.7.1-3 [1068 B] Get:87 http://127.0.0.1:9999/debian sid/main amd64 python3-pkg-resources all 40.6.2-1 [152 kB] Get:88 http://127.0.0.1:9999/debian sid/main amd64 python3-nose all 1.3.7-4 [132 kB] Get:89 http://127.0.0.1:9999/debian sid/main amd64 python3-numpy amd64 1:1.16.0~rc2-1 [2119 kB] Get:90 http://127.0.0.1:9999/debian sid/main amd64 python3-setuptools all 40.6.2-1 [303 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 122 MB in 1s (103 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.0-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.5-1_amd64.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../05-libpython2.7-minimal_2.7.15-5_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.15-5) ... 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Setting up libpipeline1:amd64 (1.5.0-2) ... Setting up m4 (1.4.18-2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:amd64 (1:5.34-2) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up sensible-utils (0.0.12) ... Processing triggers for libc-bin (2.28-4) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libexpat1-dev:amd64 (2.2.6-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgfortran5:amd64 (8.2.0-14) ... Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-5) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up python2.7 (2.7.15-5) ... Setting up python3.7 (3.7.2-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpython3.7:amd64 (3.7.2-1) ... Setting up libpython2.7:amd64 (2.7.15-5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-dev:amd64 (3.7.2-1) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libpython2.7-dev:amd64 (2.7.15-5) ... Setting up python2.7-dev (2.7.15-5) ... Setting up libpython3-dev:amd64 (3.7.1-3) ... Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:amd64 (3.7.1-3) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-3) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up python3-pkg-resources (40.6.2-1) ... Setting up python3.7-dev (3.7.2-1) ... Setting up python2 (2.7.15-3) ... Setting up libpython2-dev:amd64 (2.7.15-3) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up libpython3-all-dev:amd64 (3.7.1-3) ... Setting up python3-nose (1.3.7-4) ... Setting up python2-dev (2.7.15-3) ... Setting up python3-lib2to3 (3.7.2-2) ... Setting up python3-distutils (3.7.2-2) ... Setting up python (2.7.15-3) ... Setting up libpython-dev:amd64 (2.7.15-3) ... Setting up python3-numpy (1:1.16.0~rc2-1) ... Setting up python-dev (2.7.15-3) ... Setting up libpython-all-dev:amd64 (2.7.15-3) ... Setting up python-pkg-resources (40.6.2-1) ... Setting up python-numpy (1:1.16.0~rc2-1) ... Setting up python3-setuptools (40.6.2-1) ... Setting up dh-python (3.20180927) ... Setting up python-nose (1.3.7-4) ... Setting up python-all (2.7.15-3) ... Setting up python-setuptools (40.6.2-1) ... Setting up python3-dev (3.7.1-3) ... Setting up python-all-dev (2.7.15-3) ... Setting up python3-all (3.7.1-3) ... Setting up python3-all-dev (3.7.1-3) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12) ... Setting up sbuild-build-depends-pykdtree-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-14 gcc-8_8.2.0-14 libc6-dev_2.28-4 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 linux-libc-dev_4.19.13-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 clang-7_1:7.0.1-4 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-14 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2 g++-8_8.2.0-14 gcc_4:8.2.0-2 gcc-8_8.2.0-14 gcc-8-base_8.2.0-14 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8.2.0-14 lib32stdc++6_8.2.0-14 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libasan5_8.2.0-14 libatomic1_8.2.0-14 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-11 libblas3_3.8.0-2 libblkid1_2.33-0.2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-4 libc-dev-bin_2.28-4 libc6_2.28-4 libc6-dev_2.28-4 libc6-i386_2.28-4 libcap-ng0_0.7.9-1+b1 libcc1-0_8.2.0-14 libclang-common-7-dev_1:7.0.1-4 libclang1-7_1:7.0.1-4 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.246 libdpkg-perl_1.19.2 libedit2_3.1-20181209-1 libelf1_0.175-2 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.2.0-14 libgcc1_1:8.2.0-14 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libgfortran5_8.2.0-14 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2 libgomp1_8.2.0-14 libgpg-error0_1.33-3 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn2-0_2.0.5-1 libisl19_0.20-2 libitm1_8.2.0-14 liblapack3_3.8.0-2 libllvm7_1:7.0.1-4 liblsan0_8.2.0-14 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2~rc1-1 libmpx2_8.2.0-14 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libobjc-8-dev_8.2.0-14 libobjc4_8.2.0-14 libomp-7-dev_1:7.0.1-4 libomp5-7_1:7.0.1-4 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-5 libpython2.7-dev_2.7.15-5 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libpython3-all-dev_3.7.1-3 libpython3-dev_3.7.1-3 libpython3-stdlib_3.7.1-3 libpython3.7_3.7.2-1 libpython3.7-dev_3.7.2-1 libpython3.7-minimal_3.7.2-1 libpython3.7-stdlib_3.7.2-1 libquadmath0_8.2.0-14 libreadline7_7.0-5 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 libsystemd0_240-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libtsan0_8.2.0-14 libubsan1_8.2.0-14 libuchardet0_0.0.6-3 libudev1_240-2 libunistring2_0.9.10-1 libuuid1_2.33-0.2 libxml2_2.9.4+dfsg1-7+b3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.13-1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mime-support_3.61 mount_2.33-0.2 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 po-debconf_1.0.21 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-nose_1.3.7-4 python-numpy_1:1.16.0~rc2-1 python-pkg-resources_40.6.2-1 python-setuptools_40.6.2-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-3 python3-all_3.7.1-3 python3-all-dev_3.7.1-3 python3-dev_3.7.1-3 python3-distutils_3.7.2-2 python3-lib2to3_3.7.2-2 python3-minimal_3.7.1-3 python3-nose_1.3.7-4 python3-numpy_1:1.16.0~rc2-1 python3-pkg-resources_40.6.2-1 python3-setuptools_40.6.2-1 python3.7_3.7.2-1 python3.7-dev_3.7.2-1 python3.7-minimal_3.7.2-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pykdtree-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-3 tar_1.30+dfsg-4 tzdata_2018i-1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 11 12:38:49 2018 UTC gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pykdtree_1.3.1-2.dsc dpkg-source: info: extracting pykdtree in /<> dpkg-source: info: unpacking pykdtree_1.3.1.orig.tar.gz dpkg-source: info: unpacking pykdtree_1.3.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-fix_egginfo_source.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-8f579772-5c2f-4e87-bf94-6b7bf7cc03c3 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pykdtree dpkg-buildpackage: info: source version 1.3.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/<>/.pybuild/cpython2_2.7_pykdtree/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.7_pykdtree/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree copying pykdtree/test_tree.py -> /<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree copying pykdtree/__init__.py -> /<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree running build_ext building 'pykdtree.kdtree' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/pykdtree x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -c pykdtree/kdtree.c -o build/temp.linux-amd64-2.7/pykdtree/kdtree.o -std=c99 -O3 -fopenmp In file included from pykdtree/kdtree.c:525: In file included from /usr/include/python2.7/numpy/arrayobject.h:4: In file included from /usr/include/python2.7/numpy/ndarrayobject.h:12: In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1822: /usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -c pykdtree/_kdtree_core.c -o build/temp.linux-amd64-2.7/pykdtree/_kdtree_core.o -std=c99 -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-AjKZhf/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/pykdtree/kdtree.o build/temp.linux-amd64-2.7/pykdtree/_kdtree_core.o -o /<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree/kdtree.so -lgomp I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.7_pykdtree/build/pykdtree copying pykdtree/test_tree.py -> /<>/.pybuild/cpython3_3.7_pykdtree/build/pykdtree copying pykdtree/__init__.py -> /<>/.pybuild/cpython3_3.7_pykdtree/build/pykdtree running build_ext building 'pykdtree.kdtree' extension creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/pykdtree x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -I/usr/lib/python3/dist-packages/numpy/core/include -c pykdtree/kdtree.c -o build/temp.linux-amd64-3.7/pykdtree/kdtree.o -std=c99 -O3 -fopenmp In file included from pykdtree/kdtree.c:525: In file included from /usr/include/python3.7m/numpy/arrayobject.h:4: In file included from /usr/include/python3.7m/numpy/ndarrayobject.h:12: In file included from /usr/include/python3.7m/numpy/ndarraytypes.h:1822: /usr/include/python3.7m/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -I/usr/lib/python3/dist-packages/numpy/core/include -c pykdtree/_kdtree_core.c -o build/temp.linux-amd64-3.7/pykdtree/_kdtree_core.o -std=c99 -O3 -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/pykdtree/kdtree.o build/temp.linux-amd64-3.7/pykdtree/_kdtree_core.o -o /<>/.pybuild/cpython3_3.7_pykdtree/build/pykdtree/kdtree.cpython-37m-x86_64-linux-gnu.so -lgomp dh_auto_test -a -O--buildsystem=pybuild I: pybuild base:217: cd /<>/.pybuild/cpython2_2.7_pykdtree/build; python2.7 -m nose -v Failure: ImportError (/<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree/kdtree.so: undefined symbol: __kmpc_for_static_init_4u) ... ERROR ====================================================================== ERROR: Failure: ImportError (/<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree/kdtree.so: undefined symbol: __kmpc_for_static_init_4u) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/nose/loader.py", line 418, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python2.7/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree/test_tree.py", line 3, in from pykdtree.kdtree import KDTree ImportError: /<>/.pybuild/cpython2_2.7_pykdtree/build/pykdtree/kdtree.so: undefined symbol: __kmpc_for_static_init_4u ---------------------------------------------------------------------- Ran 1 test in 0.031s FAILED (errors=1) E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd /<>/.pybuild/cpython2_2.7_pykdtree/build; python2.7 -m nose -v dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 returned exit code 13 make: *** [debian/rules:13: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-01-09T22:26:40Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 2792 Build-Time: 7 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 25 Job: pykdtree_1.3.1-2 Machine Architecture: amd64 Package: pykdtree Package-Time: 48 Source-Version: 1.3.1-2 Space: 2792 Status: attempted Version: 1.3.1-2 -------------------------------------------------------------------------------- Finished at 2019-01-09T22:26:40Z Build needed 00:00:48, 2792k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 49.163663891s