DC-Build-Header: librostlab-blast 1.0.1-9 / 2019-01-09 22:15:54 +0000 DC-Task: type:rebuild-binarch-only source:librostlab-blast version:1.0.1-9 chroot:unstable esttime:89 logfile:/tmp/librostlab-blast_1.0.1-9_unstable_clang8.log modes:clang8:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang8 librostlab-blast_1.0.1-9' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-5-18.eu-central-1.compute.internal +==============================================================================+ | librostlab-blast 1.0.1-9 (amd64) Wed, 09 Jan 2019 22:15:54 +0000 | +==============================================================================+ Package: librostlab-blast Version: 1.0.1-9 Source Version: 1.0.1-9 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-b55774a5-d9e4-4e25-94dc-2948f8758219' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang8 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=8 + echo 'Install of clang-8' Install of clang-8 + echo deb http://127.0.0.1:9999/debian experimental main + apt-get update Get:1 http://127.0.0.1:9999/debian sid InRelease [238 kB] Get:2 http://127.0.0.1:9999/debian experimental InRelease [101 kB] Get:3 http://127.0.0.1:9999/debian sid/main Sources.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:5 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:6 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-2026.40.pdiff [16.8 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-2026.40.pdiff [32.0 kB] Get:6 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-2026.40.pdiff [16.8 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-2026.40.pdiff [32.0 kB] Get:9 http://127.0.0.1:9999/debian sid/main Translation-en [6274 kB] Get:10 http://127.0.0.1:9999/debian experimental/main amd64 Packages [248 kB] Get:11 http://127.0.0.1:9999/debian experimental/main Translation-en [173 kB] Fetched 7204 kB in 2s (3485 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-8 libomp-8-dev libobjc-8-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libllvm8 libobjc4 libomp5-8 Suggested packages: clang-8-doc libomp-8-doc Recommended packages: llvm-8-dev python The following NEW packages will be installed: clang-8 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libllvm8 libobjc-8-dev libobjc4 libomp-8-dev libomp5-8 0 upgraded, 14 newly installed, 0 to remove and 5 not upgraded. Need to get 35.8 MB of archives. After this operation, 191 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:3 http://127.0.0.1:9999/debian experimental/main amd64 libllvm8 amd64 1:8~svn350193-1~exp1 [13.8 MB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libobjc4 amd64 8.2.0-14 [50.4 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 libobjc-8-dev amd64 8.2.0-14 [225 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libc6-i386 amd64 2.28-4 [2873 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 lib32gcc1 amd64 1:8.2.0-14 [47.9 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 lib32stdc++6 amd64 8.2.0-14 [406 kB] Get:10 http://127.0.0.1:9999/debian experimental/main amd64 libclang-common-8-dev amd64 1:8~svn350193-1~exp1 [3350 kB] Get:11 http://127.0.0.1:9999/debian experimental/main amd64 libclang1-8 amd64 1:8~svn350193-1~exp1 [6255 kB] Get:12 http://127.0.0.1:9999/debian experimental/main amd64 clang-8 amd64 1:8~svn350193-1~exp1 [8025 kB] Get:13 http://127.0.0.1:9999/debian experimental/main amd64 libomp5-8 amd64 1:8~svn350193-1~exp1 [328 kB] Get:14 http://127.0.0.1:9999/debian experimental/main amd64 libomp-8-dev amd64 1:8~svn350193-1~exp1 [58.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.8 MB in 0s (115 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11802 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm8:amd64. Preparing to unpack .../02-libllvm8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libllvm8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../03-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../04-libobjc4_8.2.0-14_amd64.deb ... Unpacking libobjc4:amd64 (8.2.0-14) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../05-libobjc-8-dev_8.2.0-14_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.2.0-14) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../06-libc6-i386_2.28-4_amd64.deb ... Unpacking libc6-i386 (2.28-4) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../07-lib32gcc1_1%3a8.2.0-14_amd64.deb ... Unpacking lib32gcc1 (1:8.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../08-lib32stdc++6_8.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (8.2.0-14) ... Selecting previously unselected package libclang-common-8-dev. Preparing to unpack .../09-libclang-common-8-dev_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libclang-common-8-dev (1:8~svn350193-1~exp1) ... Selecting previously unselected package libclang1-8:amd64. Preparing to unpack .../10-libclang1-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libclang1-8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package clang-8. Preparing to unpack .../11-clang-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking clang-8 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libomp5-8:amd64. Preparing to unpack .../12-libomp5-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libomp5-8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libomp-8-dev. Preparing to unpack .../13-libomp-8-dev_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libomp-8-dev (1:8~svn350193-1~exp1) ... Setting up libomp5-8:amd64 (1:8~svn350193-1~exp1) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libc6-i386 (2.28-4) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libomp-8-dev (1:8~svn350193-1~exp1) ... Processing triggers for libc-bin (2.28-4) ... Setting up lib32gcc1 (1:8.2.0-14) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libobjc4:amd64 (8.2.0-14) ... Setting up libobjc-8-dev:amd64 (8.2.0-14) ... Setting up libllvm8:amd64 (1:8~svn350193-1~exp1) ... Setting up libclang1-8:amd64 (1:8~svn350193-1~exp1) ... Setting up lib32stdc++6 (8.2.0-14) ... Setting up libclang-common-8-dev (1:8~svn350193-1~exp1) ... Setting up clang-8 (1:8~svn350193-1~exp1) ... Processing triggers for libc-bin (2.28-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-8 g++-4.6 + ln -s clang-8 gcc-4.6 + ln -s clang-8 cpp-4.6 + ln -s clang-8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-8 g++-4.7 + ln -s clang-8 gcc-4.7 + ln -s clang-8 cpp-4.7 + ln -s clang-8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-8 g++-4.8 + ln -s clang-8 gcc-4.8 + ln -s clang-8 cpp-4.8 + ln -s clang-8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-8 g++-4.9 + ln -s clang-8 gcc-4.9 + ln -s clang-8 cpp-4.9 + ln -s clang-8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-8 g++-5 + ln -s clang-8 gcc-5 + ln -s clang-8 cpp-5 + ln -s clang-8 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-8 g++-6 + ln -s clang-8 gcc-6 + ln -s clang-8 cpp-6 + ln -s clang-8 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-8 g++-7 + ln -s clang-8 gcc-7 + ln -s clang-8 cpp-7 + ln -s clang-8 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-8 g++-8 + ln -s clang-8 gcc-8 + ln -s clang-8 cpp-8 + ln -s clang-8 gcc + echo 'gcc-8 hold' + dpkg --set-selections + echo 'g++-8 hold' + dpkg --set-selections + cd - /build/librostlab-blast-KMiKPL + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang8'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian sid InRelease Hit:2 http://127.0.0.1:9999/debian experimental InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libmpfr6 libpam-modules libpam-modules-bin libpam-runtime libpam0g 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1519 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libpam0g amd64 1.1.8-4 [124 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules-bin amd64 1.1.8-4 [106 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules amd64 1.1.8-4 [305 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libpam-runtime all 1.1.8-4 [211 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [773 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1519 kB in 0s (28.0 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'librostlab-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librostlab-blast.git Please use: git clone https://salsa.debian.org/med-team/librostlab-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 392 kB of source archives. Get:1 http://127.0.0.1:9999/debian sid/main librostlab-blast 1.0.1-9 (dsc) [2385 B] Get:2 http://127.0.0.1:9999/debian sid/main librostlab-blast 1.0.1-9 (tar) [384 kB] Get:3 http://127.0.0.1:9999/debian sid/main librostlab-blast 1.0.1-9 (diff) [5188 B] Fetched 392 kB in 0s (1244 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/librostlab-blast-KMiKPL/librostlab-blast-1.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-KMiKPL' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RFhu8v/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-RFhu8v/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RFhu8v/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-RFhu8v/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RFhu8v/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-RFhu8v/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RFhu8v/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Filtered Build-Depends: debhelper (>= 11~), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra dpkg-deb: building package 'sbuild-build-depends-librostlab-blast-dummy' in '/<>/resolver-RFhu8v/apt_archive/sbuild-build-depends-librostlab-blast-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-librostlab-blast-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-RFhu8v/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RFhu8v/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RFhu8v/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RFhu8v/apt_archive ./ Sources [564 B] Get:5 copy:/<>/resolver-RFhu8v/apt_archive ./ Packages [651 B] Fetched 2178 B in 0s (0 B/s) Reading package lists... Reading package lists... Install librostlab-blast build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libbrotli1 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu63 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libncurses6 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libptexenc1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libssl1.1 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp6 libwoff1 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxhash0 libzzip-0-13 lsb-base m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui flex-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff cups-common libgd-tools krb5-doc krb5-user liblcms2-utils librostlab-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2-doc python2.7-doc binfmt-support readline-doc gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-fonts-recommended-doc texlive-latex-base-doc python-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex Recommended packages: libfl-dev curl | wget | lynx fonts-liberation libcupsfilters1 dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libgts-bin krb5-locales libgpm2 libltdl-dev libmail-sendmail-perl lmodern tex-gyre tipa texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libbrotli1 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3 libcups2 libcupsimage2 libdatrie1 libdbus-1-3 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz-icu0 libharfbuzz0b libice6 libicu63 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblab-gamut1 liblcms2-2 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libncurses6 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpng16-16 libpotrace0 libptexenc1 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline7 librostlab3 librostlab3-dev libsigsegv2 libsm6 libsqlite3-0 libssl1.1 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp6 libwoff1 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxdot4 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libxxhash0 libzzip-0-13 lsb-base m4 man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2 python2-minimal python2.7 python2.7-minimal readline-common sbuild-build-depends-librostlab-blast-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils 0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 153 MB of archives. After this operation, 539 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RFhu8v/apt_archive ./ sbuild-build-depends-librostlab-blast-dummy 0.invalid.0 [936 B] Get:2 http://127.0.0.1:9999/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libpipeline1 amd64 1.5.0-2 [29.5 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7-minimal amd64 2.7.15-5 [394 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 python2.7-minimal amd64 2.7.15-5 [1365 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 python2-minimal amd64 2.7.15-3 [41.3 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 python-minimal amd64 2.7.15-3 [20.9 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 mime-support all 3.61 [37.1 kB] Get:12 http://127.0.0.1:9999/debian sid/main amd64 libexpat1 amd64 2.2.6-1 [105 kB] Get:13 http://127.0.0.1:9999/debian sid/main amd64 readline-common all 7.0-5 [70.6 kB] Get:14 http://127.0.0.1:9999/debian sid/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:15 http://127.0.0.1:9999/debian sid/main amd64 libsqlite3-0 amd64 3.26.0+fossilbc891ac6b-1 [634 kB] Get:16 http://127.0.0.1:9999/debian sid/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:17 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7-stdlib amd64 2.7.15-5 [1909 kB] Get:18 http://127.0.0.1:9999/debian sid/main amd64 python2.7 amd64 2.7.15-5 [299 kB] Get:19 http://127.0.0.1:9999/debian sid/main amd64 libpython2-stdlib amd64 2.7.15-3 [20.7 kB] Get:20 http://127.0.0.1:9999/debian sid/main amd64 libpython-stdlib amd64 2.7.15-3 [20.7 kB] Get:21 http://127.0.0.1:9999/debian sid/main amd64 python2 amd64 2.7.15-3 [41.5 kB] Get:22 http://127.0.0.1:9999/debian sid/main amd64 python amd64 2.7.15-3 [22.7 kB] Get:23 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Get:35 http://127.0.0.1:9999/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:36 http://127.0.0.1:9999/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:37 http://127.0.0.1:9999/debian sid/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:38 http://127.0.0.1:9999/debian sid/main amd64 libbison-dev amd64 2:3.2.4.dfsg-1 [475 kB] Get:39 http://127.0.0.1:9999/debian sid/main amd64 bison amd64 2:3.2.4.dfsg-1 [843 kB] Get:40 http://127.0.0.1:9999/debian sid/main amd64 d-shlibs all 0.83 [17.1 kB] Get:41 http://127.0.0.1:9999/debian sid/main amd64 libtool all 2.4.6-6 [547 kB] Get:42 http://127.0.0.1:9999/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:43 http://127.0.0.1:9999/debian sid/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:44 http://127.0.0.1:9999/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB] Get:45 http://127.0.0.1:9999/debian sid/main amd64 dh-strip-nondeterminism all 1.0.0-1 [12.5 kB] Get:46 http://127.0.0.1:9999/debian sid/main amd64 libelf1 amd64 0.175-2 [160 kB] Get:47 http://127.0.0.1:9999/debian sid/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:48 http://127.0.0.1:9999/debian sid/main amd64 libglib2.0-0 amd64 2.58.2-3 [1257 kB] Get:49 http://127.0.0.1:9999/debian sid/main amd64 libicu63 amd64 63.1-5 [8293 kB] Get:50 http://127.0.0.1:9999/debian sid/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:51 http://127.0.0.1:9999/debian sid/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:52 http://127.0.0.1:9999/debian sid/main amd64 libncurses6 amd64 6.1+20181013-1 [102 kB] Get:53 http://127.0.0.1:9999/debian sid/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:54 http://127.0.0.1:9999/debian sid/main amd64 intltool-debian all 0.35.0+20060710.4 [26.3 kB] Get:55 http://127.0.0.1:9999/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:56 http://127.0.0.1:9999/debian sid/main amd64 debhelper all 12 [1002 kB] Get:57 http://127.0.0.1:9999/debian sid/main amd64 libllvm6.0 amd64 1:6.0.1-9.2 [14.7 MB] Get:58 http://127.0.0.1:9999/debian sid/main amd64 libclang1-6.0 amd64 1:6.0.1-9.2 [6959 kB] Get:59 http://127.0.0.1:9999/debian sid/main amd64 libxapian30 amd64 1.4.9-1 [1101 kB] Get:60 http://127.0.0.1:9999/debian sid/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get:61 http://127.0.0.1:9999/debian sid/main amd64 libpng16-16 amd64 1.6.36-2 [292 kB] Get:62 http://127.0.0.1:9999/debian sid/main amd64 libfreetype6 amd64 2.9.1-3 [379 kB] Get:63 http://127.0.0.1:9999/debian sid/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:64 http://127.0.0.1:9999/debian sid/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:65 http://127.0.0.1:9999/debian sid/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:66 http://127.0.0.1:9999/debian sid/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:67 http://127.0.0.1:9999/debian sid/main amd64 fonts-lmodern all 2.004.5-5 [4539 kB] Get:68 http://127.0.0.1:9999/debian sid/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:69 http://127.0.0.1:9999/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:70 http://127.0.0.1:9999/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:71 http://127.0.0.1:9999/debian sid/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:72 http://127.0.0.1:9999/debian sid/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:73 http://127.0.0.1:9999/debian sid/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:74 http://127.0.0.1:9999/debian sid/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:75 http://127.0.0.1:9999/debian sid/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:76 http://127.0.0.1:9999/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:77 http://127.0.0.1:9999/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:78 http://127.0.0.1:9999/debian sid/main amd64 libcairo2 amd64 1.16.0-2 [690 kB] Get:79 http://127.0.0.1:9999/debian sid/main amd64 libcdt5 amd64 2.40.1-5+b2 [60.9 kB] Get:80 http://127.0.0.1:9999/debian sid/main amd64 libcgraph6 amd64 2.40.1-5+b2 [84.5 kB] Get:81 http://127.0.0.1:9999/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:82 http://127.0.0.1:9999/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:83 http://127.0.0.1:9999/debian sid/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:84 http://127.0.0.1:9999/debian sid/main amd64 libtiff5 amd64 4.0.10-3 [257 kB] Get:85 http://127.0.0.1:9999/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:86 http://127.0.0.1:9999/debian sid/main amd64 libgd3 amd64 2.2.5-5 [136 kB] Get:87 http://127.0.0.1:9999/debian sid/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get:88 http://127.0.0.1:9999/debian sid/main amd64 libltdl7 amd64 2.4.6-6 [390 kB] Get:89 http://127.0.0.1:9999/debian sid/main amd64 libfribidi0 amd64 1.0.5-3 [63.3 kB] Get:90 http://127.0.0.1:9999/debian sid/main amd64 libthai-data all 0.1.28-1 [170 kB] Get:91 http://127.0.0.1:9999/debian sid/main amd64 libdatrie1 amd64 0.2.12-1 [39.1 kB] Get:92 http://127.0.0.1:9999/debian sid/main amd64 libthai0 amd64 0.1.28-1 [53.9 kB] Get:93 http://127.0.0.1:9999/debian sid/main amd64 libpango-1.0-0 amd64 1.42.4-6 [185 kB] Get:94 http://127.0.0.1:9999/debian sid/main amd64 libgraphite2-3 amd64 1.3.12-1 [80.2 kB] Get:95 http://127.0.0.1:9999/debian sid/main amd64 libharfbuzz0b amd64 2.3.0-1 [1176 kB] Get:96 http://127.0.0.1:9999/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.42.4-6 [67.9 kB] Get:97 http://127.0.0.1:9999/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.42.4-6 [55.5 kB] Get:98 http://127.0.0.1:9999/debian sid/main amd64 libpathplan4 amd64 2.40.1-5+b2 [63.8 kB] Get:99 http://127.0.0.1:9999/debian sid/main amd64 libxdot4 amd64 2.40.1-5+b2 [57.2 kB] Get:100 http://127.0.0.1:9999/debian sid/main amd64 libgvc6 amd64 2.40.1-5+b2 [647 kB] Get:101 http://127.0.0.1:9999/debian sid/main amd64 libgvpr2 amd64 2.40.1-5+b2 [213 kB] Get:102 http://127.0.0.1:9999/debian sid/main amd64 lsb-base all 10.2018112800 [28.3 kB] Get:103 http://127.0.0.1:9999/debian sid/main amd64 x11-common all 1:7.7+19 [251 kB] Get:104 http://127.0.0.1:9999/debian sid/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:105 http://127.0.0.1:9999/debian sid/main amd64 liblab-gamut1 amd64 2.40.1-5+b2 [221 kB] Get:106 http://127.0.0.1:9999/debian sid/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:107 http://127.0.0.1:9999/debian sid/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:108 http://127.0.0.1:9999/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:109 http://127.0.0.1:9999/debian sid/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:110 http://127.0.0.1:9999/debian sid/main amd64 graphviz amd64 2.40.1-5+b2 [595 kB] Get:111 http://127.0.0.1:9999/debian sid/main amd64 libavahi-common-data amd64 0.7-4+b1 [122 kB] Get:112 http://127.0.0.1:9999/debian sid/main amd64 libavahi-common3 amd64 0.7-4+b1 [54.6 kB] Get:113 http://127.0.0.1:9999/debian sid/main amd64 libdbus-1-3 amd64 1.12.12-1 [212 kB] Get:114 http://127.0.0.1:9999/debian sid/main amd64 libavahi-client3 amd64 0.7-4+b1 [58.1 kB] Get:115 http://127.0.0.1:9999/debian sid/main amd64 libbrotli1 amd64 1.0.7-2 [270 kB] Get:116 http://127.0.0.1:9999/debian sid/main amd64 libkeyutils1 amd64 1.5.9-9.3 [13.0 kB] Get:117 http://127.0.0.1:9999/debian sid/main amd64 libkrb5support0 amd64 1.16.2-1 [63.3 kB] Get:118 http://127.0.0.1:9999/debian sid/main amd64 libk5crypto3 amd64 1.16.2-1 [121 kB] Get:119 http://127.0.0.1:9999/debian sid/main amd64 libkrb5-3 amd64 1.16.2-1 [320 kB] Get:120 http://127.0.0.1:9999/debian sid/main amd64 libgssapi-krb5-2 amd64 1.16.2-1 [158 kB] Get:121 http://127.0.0.1:9999/debian sid/main amd64 libcups2 amd64 2.2.10-3 [324 kB] Get:122 http://127.0.0.1:9999/debian sid/main amd64 libcupsimage2 amd64 2.2.10-3 [132 kB] Get:123 http://127.0.0.1:9999/debian sid/main amd64 libgs9-common all 9.26~dfsg-2 [5137 kB] Get:124 http://127.0.0.1:9999/debian sid/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:125 http://127.0.0.1:9999/debian sid/main amd64 libijs-0.35 amd64 0.35-13 [18.5 kB] Get:126 http://127.0.0.1:9999/debian sid/main amd64 libjbig2dec0 amd64 0.15-2 [61.7 kB] Get:127 http://127.0.0.1:9999/debian sid/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:128 http://127.0.0.1:9999/debian sid/main amd64 libopenjp2-7 amd64 2.3.0-1.1 [158 kB] Get:129 http://127.0.0.1:9999/debian sid/main amd64 libpaper1 amd64 1.1.26 [20.8 kB] Get:130 http://127.0.0.1:9999/debian sid/main amd64 libgs9 amd64 9.26~dfsg-2 [2198 kB] Get:131 http://127.0.0.1:9999/debian sid/main amd64 libharfbuzz-icu0 amd64 2.3.0-1 [817 kB] Get:132 http://127.0.0.1:9999/debian sid/main amd64 libkpathsea6 amd64 2018.20181218.49446-1 [167 kB] Get:133 http://127.0.0.1:9999/debian sid/main amd64 libpaper-utils amd64 1.1.26 [17.9 kB] Get:134 http://127.0.0.1:9999/debian sid/main amd64 libpotrace0 amd64 1.15-1 [26.3 kB] Get:135 http://127.0.0.1:9999/debian sid/main amd64 libptexenc1 amd64 2018.20181218.49446-1 [61.0 kB] Get:136 http://127.0.0.1:9999/debian sid/main amd64 librostlab3 amd64 1.0.20-8 [6180 B] Get:137 http://127.0.0.1:9999/debian sid/main amd64 librostlab3-dev amd64 1.0.20-8 [13.6 kB] Get:138 http://127.0.0.1:9999/debian sid/main amd64 libsynctex2 amd64 2018.20181218.49446-1 [80.5 kB] Get:139 http://127.0.0.1:9999/debian sid/main amd64 libteckit0 amd64 2.5.8+ds2-5 [318 kB] Get:140 http://127.0.0.1:9999/debian sid/main amd64 libtexlua52 amd64 2018.20181218.49446-1 [112 kB] Get:141 http://127.0.0.1:9999/debian sid/main amd64 libtexlua53 amd64 2018.20181218.49446-1 [126 kB] Get:142 http://127.0.0.1:9999/debian sid/main amd64 libtexluajit2 amd64 2018.20181218.49446-1 [256 kB] Get:143 http://127.0.0.1:9999/debian sid/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get:144 http://127.0.0.1:9999/debian sid/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:145 http://127.0.0.1:9999/debian sid/main amd64 libxxhash0 amd64 0.6.5-2 [7156 B] Get:146 http://127.0.0.1:9999/debian sid/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [55.4 kB] Get:147 http://127.0.0.1:9999/debian sid/main amd64 preview-latex-style all 11.91-2 [201 kB] Get:148 http://127.0.0.1:9999/debian sid/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:149 http://127.0.0.1:9999/debian sid/main amd64 texlive-binaries amd64 2018.20181218.49446-1 [11.3 MB] Get:150 http://127.0.0.1:9999/debian sid/main amd64 xdg-utils all 1.1.3-1 [73.3 kB] Get:151 http://127.0.0.1:9999/debian sid/main amd64 texlive-base all 2018.20181214-1 [19.4 MB] Get:152 http://127.0.0.1:9999/debian sid/main amd64 texlive-fonts-recommended all 2018.20181214-1 [5293 kB] Get:153 http://127.0.0.1:9999/debian sid/main amd64 texlive-latex-base all 2018.20181214-1 [985 kB] Get:154 http://127.0.0.1:9999/debian sid/main amd64 texlive-latex-recommended all 2018.20181214-1 [15.4 MB] Get:155 http://127.0.0.1:9999/debian sid/main amd64 texlive-pictures all 2018.20181214-1 [4154 kB] Get:156 http://127.0.0.1:9999/debian sid/main amd64 texlive-latex-extra all 2018.20181214-1 [12.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 153 MB in 2s (87.5 MB/s) Selecting previously unselected package bsdmainutils. 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Setting up libsqlite3-0:amd64 (3.26.0+fossilbc891ac6b-1) ... Setting up libbison-dev:amd64 (2:3.2.4.dfsg-1) ... Setting up libfribidi0:amd64 (1.0.5-3) ... Setting up libpotrace0:amd64 (1.15-1) ... Setting up libteckit0:amd64 (2.5.8+ds2-5) ... Setting up libthai-data (0.1.28-1) ... Setting up bison (2:3.2.4.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up xdg-utils (1.1.3-1) ... Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up libtexluajit2:amd64 (2018.20181218.49446-1) ... Setting up libcdt5 (2.40.1-5+b2) ... Setting up librostlab3-dev (1.0.20-8) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-5) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libdbus-1-3:amd64 (1.12.12-1) ... Setting up fonts-lmodern (2.004.5-5) ... Setting up libavahi-common-data:amd64 (0.7-4+b1) ... Setting up libcgraph6 (2.40.1-5+b2) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-4) ... Setting up gettext (0.19.8.1-9) ... Setting up flex (2.6.4-6.2) ... Setting up libgvpr2 (2.40.1-5+b2) ... Setting up groff-base (1.22.4-2) ... Setting up doxygen (1.8.13-10) ... Setting up python2.7 (2.7.15-5) ... Setting up libharfbuzz0b:amd64 (2.3.0-1) ... Setting up libtiff5:amd64 (4.0.10-3) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.28-1) ... Setting up file (1:5.34-2) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up ucf (3.0038+nmu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libavahi-common3:amd64 (0.7-4+b1) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-6) ... Setting up libpaper1:amd64 (1.1.26) ... Creating config file /etc/papersize with new version Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up libpaper-utils (1.1.26) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libharfbuzz-icu0:amd64 (2.3.0-1) ... Setting up tex-common (6.10) ... update-language: texlive-base not installed and configured, doing nothing! Setting up po-debconf (1.0.21) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up preview-latex-style (11.91-2) ... Setting up python2 (2.7.15-3) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.7-4+b1) ... Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up python (2.7.15-3) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgd3:amd64 (2.2.5-5) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libcups2:amd64 (2.2.10-3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-2) ... Setting up libcupsimage2:amd64 (2.2.10-3) ... Setting up libpango-1.0-0:amd64 (1.42.4-6) ... Setting up libgs9:amd64 (9.26~dfsg-2) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libpangoft2-1.0-0:amd64 (1.42.4-6) ... Setting up texlive-base (2018.20181214-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper Setting up texlive-fonts-recommended (2018.20181214-1) ... Setting up texlive-latex-base (2018.20181214-1) ... Setting up texlive-latex-recommended (2018.20181214-1) ... Setting up texlive-pictures (2018.20181214-1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-6) ... Setting up libgvc6 (2.40.1-5+b2) ... Setting up texlive-latex-extra (2018.20181214-1) ... Setting up graphviz (2.40.1-5+b2) ... Setting up debhelper (12) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up sbuild-build-depends-librostlab-blast-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-4) ... Processing triggers for tex-common (6.10) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-14 gcc-8_8.2.0-14 libc6-dev_2.28-4 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 linux-libc-dev_4.19.13-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bison_2:3.2.4.dfsg-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 clang-8_1:8~svn350193-1~exp1 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-14 d-shlibs_0.83 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6 dh-autoreconf_19 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libomp5-8_1:8~svn350193-1~exp1 libopenjp2-7_2.3.0-1.1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpaper-utils_1.1.26 libpaper1_1.1.26 libpathplan4_2.40.1-5+b2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.36.0-1 libpng16-16_1.6.36-2 libpotrace0_1.15-1 libptexenc1_2018.20181218.49446-1 libpython-stdlib_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libquadmath0_8.2.0-14 libreadline7_7.0-5 librostlab3_1.0.20-8 librostlab3-dev_1.0.20-8 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 libsynctex2_2018.20181218.49446-1 libsystemd0_240-2 libtasn1-6_4.13-3 libteckit0_2.5.8+ds2-5 libtexlua52_2018.20181218.49446-1 libtexlua53_2018.20181218.49446-1 libtexluajit2_2018.20181218.49446-1 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libtsan0_8.2.0-14 libubsan1_8.2.0-14 libuchardet0_0.0.6-3 libudev1_240-2 libunistring2_0.9.10-1 libuuid1_2.33-0.2 libwebp6_0.6.1-2 libwoff1_1.0.2-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxapian30_1.4.9-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxdot4_2.40.1-5+b2 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-7+b3 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libxxhash0_0.6.5-2 libzstd1_1.3.8+dfsg-3 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.19.13-1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mime-support_3.61 mount_2.33-0.2 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 po-debconf_1.0.21 poppler-data_0.4.9-2 preview-latex-style_11.91-2 python_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-minimal_2.7.15-5 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-librostlab-blast-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-3 t1utils_1.41-3 tar_1.30+dfsg-4 tex-common_6.10 texlive-base_2018.20181214-1 texlive-binaries_2018.20181218.49446-1 texlive-fonts-recommended_2018.20181214-1 texlive-latex-base_2018.20181214-1 texlive-latex-extra_2018.20181214-1 texlive-latex-recommended_2018.20181214-1 texlive-pictures_2018.20181214-1 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33-0.2 x11-common_1:7.7+19 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 20 09:26:55 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librostlab-blast_1.0.1-9.dsc dpkg-source: info: extracting librostlab-blast in /<> dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-b55774a5-d9e4-4e25-94dc-2948f8758219 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package librostlab-blast dpkg-buildpackage: info: source version 1.0.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking rostlab/aux_functions.h usability... yes checking rostlab/aux_functions.h presence... yes checking for rostlab/aux_functions.h... yes checking rostlab/rostlab_stdexcept.h usability... yes checking rostlab/rostlab_stdexcept.h presence... yes checking for rostlab/rostlab_stdexcept.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in lib make[4]: Entering directory '/<>/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /<>/lib/blast-parser-parser.ypp:22.9-17: warning: deprecated directive, use '%define api.namespace rostlab::blast' [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ /<>/lib/blast-parser-parser.ypp:22.9-17: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] %define namespace "rostlab::blast" ^^^^^^^^^ updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h make all-am make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++03 -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from blast-parser-parser.ypp:54: ./rostlab/blast-parser-driver.h:61:12: warning: use of enumeration in a nested name specifier is a C++11 extension [-Wc++11-extensions] friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ ./rostlab/blast-parser-driver.h:61:12: error: no function named 'yylex' with type 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::parser::location_type *, rostlab::blast::parser_driver &, void *)' (aka 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::location *, rostlab::blast::parser_driver &, void *)') was found in the specified scope ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ In file included from blast-parser-driver.cpp:19: ./rostlab/blast-parser-driver.h:61:12: warning: use of enumeration in a nested name specifier is a C++11 extension [-Wc++11-extensions] friend YY_DECL_FRIEND; ^ ./rostlab/blast-parser-driver.h:39:27: note: expanded from macro 'YY_DECL_FRIEND' rostlab::blast::parser::token_type \ ^ ./rostlab/blast-parser-driver.h:61:12: error: C++ requires a type specifier for all declarations friend YY_DECL_FRIEND; ~~~~~~ ^ ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ ./rostlab/blast-parser-driver.h:61:12: error: no function named 'yylex' with type 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::parser::location_type *, rostlab::blast::parser_driver &, void *)' (aka 'int (rostlab::blast::parser::semantic_type *, rostlab::blast::location *, rostlab::blast::parser_driver &, void *)') was found in the specified scope ./rostlab/blast-parser-driver.h:40:5: note: expanded from macro 'YY_DECL_FRIEND' ::yylex( rostlab::blast::parser::semantic_type* __yylval, \ ^ In file included from blast-parser-parser.cpp:40: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-parser.cpp:40: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-parser.cpp:40: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-parser.cpp:40: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:237:90: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << "n = " << __r.name << " d = " << __r.desc << " Length = " << __r.length << " " << __r.hsps; ^ ./rostlab/blast-result.h:224:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hsp& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:245:87: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here __os << __r.blast_version << "\n\nreferences: " << __r.references << "\n\nrounds: " << __r.rounds << "\n\nn = " << __r.q_name << " d = " << __r.q_desc << " (" << __r.q_length << ^ ./rostlab/blast-result.h:208:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::round& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:246:143: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here " letters)\n\nDatabase: " << __r.db_name << " " << __r.db_nseq << " sequences; " << __r.db_nletter << " total letters\n\none-line desc: " << __r.onelines << "\n\n" << ^ ./rostlab/blast-result.h:216:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::oneline& __r ) ^ In file included from blast-parser-driver.cpp:19: In file included from ./rostlab/blast-parser-driver.h:26: In file included from blast-parser-parser.ypp:26: In file included from ./rostlab/blast-result.h:25: /usr/include/rostlab/aux_functions.h:186:43: error: call to function 'operator<<' that is neither visible in the template definition nor found by argument-dependent lookup { if( v_i != v.begin() ) os << ", "; os << *v_i; } ^ ./rostlab/blast-result.h:247:59: note: in instantiation of function template specialization 'rostlab::operator<< >' requested here ( __r.converged ? "CONVERGED!\n\n" : "" ) << "hits: " << __r.hits << "\n\n" << __r.tail; ^ ./rostlab/blast-result.h:235:19: note: 'operator<<' should be declared prior to the call site or in namespace 'rostlab::blast' std::ostream& operator<<( std::ostream& __os, const rostlab::blast::hit& __r ) ^ 1 warning and 6 errors generated. make[5]: *** [Makefile:567: librostlab_blast_la-blast-parser-parser.lo] Error 1 make[5]: *** Waiting for unfinished jobs.... 1 warning and 6 errors generated. make[5]: *** [Makefile:560: librostlab_blast_la-blast-parser-driver.lo] Error 1 make[5]: Leaving directory '/<>/lib' make[4]: *** [Makefile:444: all] Error 2 make[4]: Leaving directory '/<>/lib' make[3]: *** [Makefile:482: all-recursive] Error 1 make[3]: Leaving directory '/<>' make[2]: *** [Makefile:393: all] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: make -j4 returned exit code 2 make[1]: *** [debian/rules:25: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:11: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-01-09T22:16:53Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 9000 Build-Time: 11 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 34 Job: librostlab-blast_1.0.1-9 Machine Architecture: amd64 Package: librostlab-blast Package-Time: 59 Source-Version: 1.0.1-9 Space: 9000 Status: attempted Version: 1.0.1-9 -------------------------------------------------------------------------------- Finished at 2019-01-09T22:16:53Z Build needed 00:00:59, 9000k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 60.493574735s