DC-Build-Header: libseqlib 1.1.2+dfsg-2 / 2019-01-09 22:20:40 +0000 DC-Task: type:rebuild-binarch-only source:libseqlib version:1.1.2+dfsg-2 chroot:unstable esttime:74 logfile:/tmp/libseqlib_1.1.2+dfsg-2_unstable_clang8.log modes:clang8:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang8 libseqlib_1.1.2+dfsg-2' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-5-193.eu-central-1.compute.internal +==============================================================================+ | libseqlib 1.1.2+dfsg-2 (amd64) Wed, 09 Jan 2019 22:20:40 +0000 | +==============================================================================+ Package: libseqlib Version: 1.1.2+dfsg-2 Source Version: 1.1.2+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-3d76b85f-e846-4dea-a5f2-aaddf88f76ae' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang8 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=8 + echo 'Install of clang-8' Install of clang-8 + echo deb http://127.0.0.1:9999/debian experimental main + apt-get update Get:1 http://127.0.0.1:9999/debian sid InRelease [238 kB] Get:2 http://127.0.0.1:9999/debian experimental InRelease [101 kB] Get:3 http://127.0.0.1:9999/debian sid/main Sources.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:5 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:6 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-2026.40.pdiff [16.8 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-2026.40.pdiff [32.0 kB] Get:6 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-2026.40.pdiff [16.8 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-2026.40.pdiff [32.0 kB] Get:9 http://127.0.0.1:9999/debian sid/main Translation-en [6274 kB] Get:10 http://127.0.0.1:9999/debian experimental/main amd64 Packages [248 kB] Get:11 http://127.0.0.1:9999/debian experimental/main Translation-en [173 kB] Fetched 7204 kB in 2s (3385 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-8 libomp-8-dev libobjc-8-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libllvm8 libobjc4 libomp5-8 Suggested packages: clang-8-doc libomp-8-doc Recommended packages: llvm-8-dev python The following NEW packages will be installed: clang-8 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libllvm8 libobjc-8-dev libobjc4 libomp-8-dev libomp5-8 0 upgraded, 14 newly installed, 0 to remove and 5 not upgraded. Need to get 35.8 MB of archives. After this operation, 191 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:3 http://127.0.0.1:9999/debian experimental/main amd64 libllvm8 amd64 1:8~svn350193-1~exp1 [13.8 MB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libobjc4 amd64 8.2.0-14 [50.4 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 libobjc-8-dev amd64 8.2.0-14 [225 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libc6-i386 amd64 2.28-4 [2873 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 lib32gcc1 amd64 1:8.2.0-14 [47.9 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 lib32stdc++6 amd64 8.2.0-14 [406 kB] Get:10 http://127.0.0.1:9999/debian experimental/main amd64 libclang-common-8-dev amd64 1:8~svn350193-1~exp1 [3350 kB] Get:11 http://127.0.0.1:9999/debian experimental/main amd64 libclang1-8 amd64 1:8~svn350193-1~exp1 [6255 kB] Get:12 http://127.0.0.1:9999/debian experimental/main amd64 clang-8 amd64 1:8~svn350193-1~exp1 [8025 kB] Get:13 http://127.0.0.1:9999/debian experimental/main amd64 libomp5-8 amd64 1:8~svn350193-1~exp1 [328 kB] Get:14 http://127.0.0.1:9999/debian experimental/main amd64 libomp-8-dev amd64 1:8~svn350193-1~exp1 [58.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.8 MB in 1s (27.0 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11802 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm8:amd64. Preparing to unpack .../02-libllvm8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libllvm8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../03-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../04-libobjc4_8.2.0-14_amd64.deb ... Unpacking libobjc4:amd64 (8.2.0-14) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../05-libobjc-8-dev_8.2.0-14_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.2.0-14) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../06-libc6-i386_2.28-4_amd64.deb ... Unpacking libc6-i386 (2.28-4) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../07-lib32gcc1_1%3a8.2.0-14_amd64.deb ... Unpacking lib32gcc1 (1:8.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../08-lib32stdc++6_8.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (8.2.0-14) ... Selecting previously unselected package libclang-common-8-dev. Preparing to unpack .../09-libclang-common-8-dev_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libclang-common-8-dev (1:8~svn350193-1~exp1) ... Selecting previously unselected package libclang1-8:amd64. Preparing to unpack .../10-libclang1-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libclang1-8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package clang-8. Preparing to unpack .../11-clang-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking clang-8 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libomp5-8:amd64. Preparing to unpack .../12-libomp5-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libomp5-8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libomp-8-dev. Preparing to unpack .../13-libomp-8-dev_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libomp-8-dev (1:8~svn350193-1~exp1) ... Setting up libomp5-8:amd64 (1:8~svn350193-1~exp1) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libc6-i386 (2.28-4) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libomp-8-dev (1:8~svn350193-1~exp1) ... Processing triggers for libc-bin (2.28-4) ... Setting up lib32gcc1 (1:8.2.0-14) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libobjc4:amd64 (8.2.0-14) ... Setting up libobjc-8-dev:amd64 (8.2.0-14) ... Setting up libllvm8:amd64 (1:8~svn350193-1~exp1) ... Setting up libclang1-8:amd64 (1:8~svn350193-1~exp1) ... Setting up lib32stdc++6 (8.2.0-14) ... Setting up libclang-common-8-dev (1:8~svn350193-1~exp1) ... Setting up clang-8 (1:8~svn350193-1~exp1) ... Processing triggers for libc-bin (2.28-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-8 g++-4.6 + ln -s clang-8 gcc-4.6 + ln -s clang-8 cpp-4.6 + ln -s clang-8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-8 g++-4.7 + ln -s clang-8 gcc-4.7 + ln -s clang-8 cpp-4.7 + ln -s clang-8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-8 g++-4.8 + ln -s clang-8 gcc-4.8 + ln -s clang-8 cpp-4.8 + ln -s clang-8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-8 g++-4.9 + ln -s clang-8 gcc-4.9 + ln -s clang-8 cpp-4.9 + ln -s clang-8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-8 g++-5 + ln -s clang-8 gcc-5 + ln -s clang-8 cpp-5 + ln -s clang-8 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-8 g++-6 + ln -s clang-8 gcc-6 + ln -s clang-8 cpp-6 + ln -s clang-8 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-8 g++-7 + ln -s clang-8 gcc-7 + ln -s clang-8 cpp-7 + ln -s clang-8 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-8 g++-8 + ln -s clang-8 gcc-8 + ln -s clang-8 cpp-8 + ln -s clang-8 gcc + echo 'gcc-8 hold' + dpkg --set-selections + echo 'g++-8 hold' + dpkg --set-selections + cd - /build/libseqlib-LKzSkJ + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang8'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian sid InRelease Hit:2 http://127.0.0.1:9999/debian experimental InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libmpfr6 libpam-modules libpam-modules-bin libpam-runtime libpam0g 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1519 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libpam0g amd64 1.1.8-4 [124 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules-bin amd64 1.1.8-4 [106 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules amd64 1.1.8-4 [305 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libpam-runtime all 1.1.8-4 [211 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [773 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1519 kB in 0s (28.4 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libseqlib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libseqlib.git Please use: git clone https://salsa.debian.org/med-team/libseqlib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://127.0.0.1:9999/debian sid/main libseqlib 1.1.2+dfsg-2 (dsc) [2205 B] Get:2 http://127.0.0.1:9999/debian sid/main libseqlib 1.1.2+dfsg-2 (tar) [157 kB] Get:3 http://127.0.0.1:9999/debian sid/main libseqlib 1.1.2+dfsg-2 (diff) [11.9 kB] Fetched 171 kB in 0s (530 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libseqlib-LKzSkJ/libseqlib-1.1.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libseqlib-LKzSkJ' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ot1vxB/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-ot1vxB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ot1vxB/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-ot1vxB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ot1vxB/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-ot1vxB/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ot1vxB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), d-shlibs, pkg-config, libhts-private-dev, libcurl4-openssl-dev | libcurl4-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev Filtered Build-Depends: debhelper (>= 11~), d-shlibs, pkg-config, libhts-private-dev, libcurl4-openssl-dev, zlib1g-dev, libfml-dev (>= 0.1-3), libbwa-dev (>= 0.7.15-3), libjsoncpp-dev, libssw-dev dpkg-deb: building package 'sbuild-build-depends-libseqlib-dummy' in '/<>/resolver-ot1vxB/apt_archive/sbuild-build-depends-libseqlib-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libseqlib-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-ot1vxB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ot1vxB/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-ot1vxB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ot1vxB/apt_archive ./ Sources [578 B] Get:5 copy:/<>/resolver-ot1vxB/apt_archive ./ Packages [654 B] Fetched 2195 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libseqlib build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbwa-dev libcroco3 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libelf1 libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libgssapi-krb5-2 libhts-dev libhts-private-dev libhts2 libicu63 libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libssw-dev libssw0 libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff samtools libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev krb5-doc krb5-user liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbwa-dev libcroco3 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libelf1 libfile-stripnondeterminism-perl libfml-dev libfml0 libglib2.0-0 libgssapi-krb5-2 libhts-dev libhts-private-dev libhts2 libicu63 libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libssw-dev libssw0 libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-libseqlib-dummy sensible-utils zlib1g-dev 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 28.7 MB of archives. After this operation, 89.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ot1vxB/apt_archive ./ sbuild-build-depends-libseqlib-dummy 0.invalid.0 [944 B] Get:2 http://127.0.0.1:9999/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 groff-base amd64 1.22.4-2 [917 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libpipeline1 amd64 1.5.0-2 [29.5 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 man-db amd64 2.8.5-1 [1274 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 libmagic-mgc amd64 1:5.34-2 [239 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 libmagic1 amd64 1:5.34-2 [116 kB] Get:10 http://127.0.0.1:9999/debian sid/main amd64 file amd64 1:5.34-2 [65.8 kB] Get:11 http://127.0.0.1:9999/debian sid/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:12 http://127.0.0.1:9999/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:13 http://127.0.0.1:9999/debian sid/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:14 http://127.0.0.1:9999/debian sid/main amd64 autoconf all 2.69-11 [341 kB] Get:15 http://127.0.0.1:9999/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:16 http://127.0.0.1:9999/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:17 http://127.0.0.1:9999/debian sid/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:18 http://127.0.0.1:9999/debian sid/main amd64 d-shlibs all 0.83 [17.1 kB] Get:19 http://127.0.0.1:9999/debian sid/main amd64 libtool all 2.4.6-6 [547 kB] Get:20 http://127.0.0.1:9999/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:21 http://127.0.0.1:9999/debian sid/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:22 http://127.0.0.1:9999/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB] Get:23 http://127.0.0.1:9999/debian sid/main amd64 dh-strip-nondeterminism all 1.0.0-1 [12.5 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libbwa-dev amd64 0.7.17-2 [130 kB] Get:36 http://127.0.0.1:9999/debian sid/main amd64 libkeyutils1 amd64 1.5.9-9.3 [13.0 kB] Get:37 http://127.0.0.1:9999/debian sid/main amd64 libkrb5support0 amd64 1.16.2-1 [63.3 kB] Get:38 http://127.0.0.1:9999/debian sid/main amd64 libk5crypto3 amd64 1.16.2-1 [121 kB] Get:39 http://127.0.0.1:9999/debian sid/main amd64 libkrb5-3 amd64 1.16.2-1 [320 kB] Get:40 http://127.0.0.1:9999/debian sid/main amd64 libgssapi-krb5-2 amd64 1.16.2-1 [158 kB] Get:41 http://127.0.0.1:9999/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27~rc8-1 [68.4 kB] Get:42 http://127.0.0.1:9999/debian sid/main amd64 libsasl2-2 amd64 2.1.27~rc8-1 [105 kB] Get:43 http://127.0.0.1:9999/debian sid/main amd64 libldap-common all 2.4.47+dfsg-1 [88.8 kB] Get:44 http://127.0.0.1:9999/debian sid/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-1 [224 kB] Get:45 http://127.0.0.1:9999/debian sid/main amd64 libnghttp2-14 amd64 1.35.1-1+b1 [82.4 kB] Get:46 http://127.0.0.1:9999/debian sid/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:47 http://127.0.0.1:9999/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get:48 http://127.0.0.1:9999/debian sid/main amd64 libssh2-1 amd64 1.8.0-2 [138 kB] Get:49 http://127.0.0.1:9999/debian sid/main amd64 libcurl3-gnutls amd64 7.62.0-1 [321 kB] Get:50 http://127.0.0.1:9999/debian sid/main amd64 libssl1.1 amd64 1.1.1a-1 [1527 kB] Get:51 http://127.0.0.1:9999/debian sid/main amd64 libcurl4 amd64 7.62.0-1 [324 kB] Get:52 http://127.0.0.1:9999/debian sid/main amd64 libcurl4-openssl-dev amd64 7.62.0-1 [411 kB] Get:53 http://127.0.0.1:9999/debian sid/main amd64 libfml0 amd64 0.1-5 [69.3 kB] Get:54 http://127.0.0.1:9999/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get:55 http://127.0.0.1:9999/debian sid/main amd64 libfml-dev amd64 0.1-5 [81.4 kB] Get:56 http://127.0.0.1:9999/debian sid/main amd64 libhts2 amd64 1.9-8 [306 kB] Get:57 http://127.0.0.1:9999/debian sid/main amd64 liblzma-dev amd64 5.2.2-1.3 [292 kB] Get:58 http://127.0.0.1:9999/debian sid/main amd64 libhts-dev amd64 1.9-8 [4345 kB] Get:59 http://127.0.0.1:9999/debian sid/main amd64 libhts-private-dev all 1.9-8 [41.8 kB] Get:60 http://127.0.0.1:9999/debian sid/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get:61 http://127.0.0.1:9999/debian sid/main amd64 libjsoncpp-dev amd64 1.7.4-3 [86.2 kB] Get:62 http://127.0.0.1:9999/debian sid/main amd64 libssw0 amd64 1.1-2 [16.5 kB] Get:63 http://127.0.0.1:9999/debian sid/main amd64 libssw-dev amd64 1.1-2 [19.3 kB] Get:64 http://127.0.0.1:9999/debian sid/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.7 MB in 1s (26.6 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-2_amd64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.0-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.5-1_amd64.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libjsoncpp-dev:amd64 (1.7.4-3) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up libfml-dev (0.1-5) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up po-debconf (1.0.21) ... Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~rc8-1) ... Setting up libsasl2-2:amd64 (2.1.27~rc8-1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-1) ... Setting up libcurl3-gnutls:amd64 (7.62.0-1) ... Setting up libcurl4:amd64 (7.62.0-1) ... Setting up libhts2:amd64 (1.9-8) ... Setting up libcurl4-openssl-dev:amd64 (7.62.0-1) ... Setting up libhts-dev:amd64 (1.9-8) ... Setting up libhts-private-dev (1.9-8) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12) ... Setting up sbuild-build-depends-libseqlib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-14 gcc-8_8.2.0-14 libc6-dev_2.28-4 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 linux-libc-dev_4.19.13-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 clang-8_1:8~svn350193-1~exp1 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-14 d-shlibs_0.83 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2 g++-8_8.2.0-14 gcc_4:8.2.0-2 gcc-8_8.2.0-14 gcc-8-base_8.2.0-14 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.12-1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.4 lib32gcc1_1:8.2.0-14 lib32stdc++6_8.2.0-14 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libasan5_8.2.0-14 libatomic1_8.2.0-14 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-11 libblkid1_2.33-0.2 libbsd0_0.9.1-1 libbwa-dev_0.7.17-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-4 libc-dev-bin_2.28-4 libc6_2.28-4 libc6-dev_2.28-4 libc6-i386_2.28-4 libcap-ng0_0.7.9-1+b1 libcc1-0_8.2.0-14 libclang-common-8-dev_1:8~svn350193-1~exp1 libclang1-8_1:8~svn350193-1~exp1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcurl3-gnutls_7.62.0-1 libcurl4_7.62.0-1 libcurl4-openssl-dev_7.62.0-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.246 libdpkg-perl_1.19.2 libedit2_3.1-20181209-1 libelf1_0.175-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libfml-dev_0.1-5 libfml0_0.1-5 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.2.0-14 libgcc1_1:8.2.0-14 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.2-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2 libgomp1_8.2.0-14 libgpg-error0_1.33-3 libgssapi-krb5-2_1.16.2-1 libhogweed4_3.4.1~rc1-1 libhts-dev_1.9-8 libhts-private-dev_1.9-8 libhts2_1.9-8 libicu63_63.1-5 libidn2-0_2.0.5-1 libisl19_0.20-2 libitm1_8.2.0-14 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 libldap-2.4-2_2.4.47+dfsg-1 libldap-common_2.4.47+dfsg-1 libllvm8_1:8~svn350193-1~exp1 liblsan0_8.2.0-14 liblz4-1_1.8.3-1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpfr6_4.0.2~rc1-1 libmpx2_8.2.0-14 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1+b1 libobjc-8-dev_8.2.0-14 libobjc4_8.2.0-14 libomp-8-dev_1:8~svn350193-1~exp1 libomp5-8_1:8~svn350193-1~exp1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpsl5_0.20.2-2 libquadmath0_8.2.0-14 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libss2_1.44.5-1 libssh2-1_1.8.0-2 libssl1.1_1.1.1a-1 libssw-dev_1.1-2 libssw0_1.1-2 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 libsystemd0_240-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libtsan0_8.2.0-14 libubsan1_8.2.0-14 libuchardet0_0.0.6-3 libudev1_240-2 libunistring2_0.9.10-1 libuuid1_2.33-0.2 libxml2_2.9.4+dfsg1-7+b3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.13-1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mount_2.33-0.2 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pkg-config_0.29-4+b1 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libseqlib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-3 tar_1.30+dfsg-4 tzdata_2018i-1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 18 10:29:47 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libseqlib_1.1.2+dfsg-2.dsc dpkg-source: info: extracting libseqlib in /<>/libseqlib-1.1.2+dfsg dpkg-source: info: unpacking libseqlib_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking libseqlib_1.1.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying adapt_to_debian_fermi-lite.patch dpkg-source: info: applying fix_fermi-lite_usage.patch dpkg-source: info: applying fix_htslib_usage.patch dpkg-source: info: applying fml_include_path.patch dpkg-source: info: applying dynamic_lib.patch dpkg-source: info: applying use_debian_packaged_jsoncpp.patch dpkg-source: info: applying use_debian_packaged_ssw.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying use_private_htslib_headers.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-3d76b85f-e846-4dea-a5f2-aaddf88f76ae SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libseqlib dpkg-buildpackage: info: source version 1.1.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:17: installing './compile' configure.ac:19: installing './config.guess' configure.ac:19: installing './config.sub' configure.ac:4: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing gzopen... -lz checking for library containing clock_gettime... none required checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/seqtools/Makefile config.status: creating libseqlib.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make all-recursive make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making all in src make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FastqReader.lo `test -f 'FastqReader.cpp' || echo './'`FastqReader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-BFC.lo `test -f 'BFC.cpp' || echo './'`BFC.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 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>/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml `pkg-config --cflags jsoncpp` -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libseqlib_la-FermiAssembler.lo `test -f 'FermiAssembler.cpp' || echo './'`FermiAssembler.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-unknown-pragmas -g -O2 -fdebug-prefix-map=/<>/libseqlib-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c FermiAssembler.cpp -fPIC -DPIC -o .libs/libseqlib_la-FermiAssembler.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/usr/include/htslib -I/usr/include/fml -I/usr/include/jsoncpp -Wno-sign-compare -Wdate-time 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.libs/libseqlib_la-ReadFilter.o .libs/libseqlib_la-SeqPlot.o .libs/libseqlib_la-GenomicRegion.o .libs/libseqlib_la-RefGenome.o .libs/libseqlib_la-BamWriter.o .libs/libseqlib_la-BamReader.o .libs/libseqlib_la-BWAWrapper.o .libs/libseqlib_la-BamRecord.o .libs/libseqlib_la-FermiAssembler.o .libs/libseqlib_la-BamHeader.o -lz -L/usr/bin/../lib/gcc/x86_64-linux-gnu/8 -L/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/lib/../lib64 -L/usr/lib/x86_64-linux-gnu -L/usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../.. -L/usr/lib/llvm-8/bin/../lib -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s -lgcc /usr/bin/../lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/bin/../lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -pthread -Wl,-soname -Wl,libseqlib.so.1 -o .libs/libseqlib.so.1.0.0 clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-pthread' [-Wunused-command-line-argument] libtool: link: (cd ".libs" && rm -f "libseqlib.so.1" && ln -s "libseqlib.so.1.0.0" "libseqlib.so.1") libtool: link: (cd ".libs" && rm -f "libseqlib.so" && ln -s "libseqlib.so.1.0.0" "libseqlib.so") libtool: link: ar cru .libs/libseqlib.a libseqlib_la-FastqReader.o libseqlib_la-BFC.o libseqlib_la-ReadFilter.o libseqlib_la-SeqPlot.o libseqlib_la-GenomicRegion.o libseqlib_la-RefGenome.o libseqlib_la-BamWriter.o libseqlib_la-BamReader.o libseqlib_la-BWAWrapper.o libseqlib_la-BamRecord.o libseqlib_la-FermiAssembler.o libseqlib_la-BamHeader.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libseqlib.a libtool: link: ( cd ".libs" && rm -f "libseqlib.la" && ln -s "../libseqlib.la" "libseqlib.la" ) make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[3]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[3]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' Making check in src make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg/src' make[2]: Entering directory '/<>/libseqlib-1.1.2+dfsg' make[2]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libseqlib-1.1.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' echo "mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin" mkdir -p bin && cp src/libseqlib.a fermi-lite/libfml.a bwa/libbwa.a htslib/libhts.a bin make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' debian/rules override_dh_install make[1]: Entering directory '/<>/libseqlib-1.1.2+dfsg' dh_install # Trick to get also headers moved by d-shlibmove cp -a SeqLib debian # note: also GenomicRegionCollection.cpp is really needed by freebayes d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/SeqLib usr/include \ src/.libs/libseqlib.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libseqlib-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libseqlib1/usr/lib/x86_64-linux-gnu mv src/.libs/libseqlib.a debian/libseqlib-dev/usr/lib/x86_64-linux-gnu mv src/.libs/libseqlib.so debian/libseqlib-dev/usr/lib/x86_64-linux-gnu mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1 debian/libseqlib1/usr/lib/x86_64-linux-gnu mv /<>/libseqlib-1.1.2+dfsg/src/.libs/libseqlib.so.1.0.0 debian/libseqlib1/usr/lib/x86_64-linux-gnu PKGDEV=libseqlib-dev PKGSHL=libseqlib1 install -d -m 755 debian/libseqlib-dev/usr/include mv debian/SeqLib debian/libseqlib-dev/usr/include mkdir -p /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv libseqlib.pc /<>/libseqlib-1.1.2+dfsg/debian/libseqlib-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>/libseqlib-1.1.2+dfsg' dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libseqlib1/DEBIAN/symbols doesn't match completely debian/libseqlib1.symbols --- debian/libseqlib1.symbols (libseqlib1_1.1.2+dfsg-2_amd64) +++ dpkg-gensymbolsPVYu68 2019-01-09 22:21:28.621934053 +0000 @@ -1,14 +1,17 @@ libseqlib.so.1 libseqlib1 #MINVER# + _Z10samfaipathPKc@Base 1.1.2+dfsg-2 _ZN12aho_corasick10basic_trieIcE10parse_textENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZN12aho_corasick10basic_trieIcE24construct_failure_statesEv@Base 1.1.1+dfsg _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE15remove_overlapsERKSt6vectorIS2_SaIS2_EE@Base 1.1.1+dfsg _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4node13find_overlapsERKS2_@Base 1.1.1+dfsg - _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeC1ERKSt6vectorIS2_SaIS2_EE@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeC1ERKSt6vectorIS2_SaIS2_EE@Base 1.1.1+dfsg _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeC2ERKSt6vectorIS2_SaIS2_EE@Base 1.1.1+dfsg - _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeD1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeD1Ev@Base 1.1.1+dfsg _ZN12aho_corasick13interval_treeINS_7ahoemitIcEEE4nodeD2Ev@Base 1.1.1+dfsg - _ZN4Json6ReaderD1Ev@Base 1.1.1+dfsg - _ZN4Json6ReaderD2Ev@Base 1.1.1+dfsg + _ZN12aho_corasick5stateIcE11add_ahoemitERKSt3setINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4lessIS8_ESaIS8_EE@Base 1.1.2+dfsg-2 + _ZN12aho_corasick5stateIcE9add_stateEc@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZN4Json6ReaderD1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN4Json6ReaderD2Ev@Base 1.1.1+dfsg _ZN6SeqLib10BWAWrapper10SetGapOpenEi@Base 1.1.1+dfsg _ZN6SeqLib10BWAWrapper11SetZDropoffEi@Base 1.1.1+dfsg _ZN6SeqLib10BWAWrapper11seqlib_add1EPK6kseq_tP8bntseq_tPhPlPiS8_PP9bntamb1_t@Base 1.1.1+dfsg @@ -30,6 +33,7 @@ _ZN6SeqLib11FastqReader4OpenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZN6SeqLib11FastqReaderC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZN6SeqLib11FastqReaderC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg + _ZN6SeqLib11scrubStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_@Base 1.1.2+dfsg-2 _ZN6SeqLib13GenomicRegion3PadEi@Base 1.1.1+dfsg _ZN6SeqLib13GenomicRegionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg _ZN6SeqLib13GenomicRegionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_RKNS_9BamHeaderE@Base 1.1.1+dfsg @@ -37,12 +41,13 @@ _ZN6SeqLib13GenomicRegionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg _ZN6SeqLib13GenomicRegionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_RKNS_9BamHeaderE@Base 1.1.1+dfsg _ZN6SeqLib13GenomicRegionC2Eiiic@Base 1.1.1+dfsg - _ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.1.1+dfsg - _ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib13TIntervalTreeIimEC1ERKS1_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib13TIntervalTreeIimEC1ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg _ZN6SeqLib13TIntervalTreeIimEC2ERKS1_@Base 1.1.1+dfsg _ZN6SeqLib13TIntervalTreeIimEC2ERSt6vectorINS_9TIntervalIimEESaIS4_EEmmmmm@Base 1.1.1+dfsg - _ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib13TIntervalTreeIimED1Ev@Base 1.1.1+dfsg _ZN6SeqLib13TIntervalTreeIimED2Ev@Base 1.1.1+dfsg + _ZN6SeqLib13TIntervalTreeIimEaSERKS1_@Base 1.1.2+dfsg-2 _ZN6SeqLib14FermiAssembler10ClearReadsEv@Base 1.1.1+dfsg _ZN6SeqLib14FermiAssembler12ClearContigsEv@Base 1.1.1+dfsg _ZN6SeqLib14FermiAssembler12CorrectReadsEv@Base 1.1.1+dfsg @@ -58,21 +63,24 @@ _ZN6SeqLib14FermiAssemblerD1Ev@Base 1.1.1+dfsg _ZN6SeqLib14FermiAssemblerD2Ev@Base 1.1.1+dfsg #MISSING: 1.1.2+dfsg# _ZN6SeqLib15cigarFromStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg - _ZN6SeqLib17UnalignedSequenceD1Ev@Base 1.1.1+dfsg - _ZN6SeqLib17UnalignedSequenceD2Ev@Base 1.1.1+dfsg + _ZN6SeqLib17UnalignedSequenceC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_@Base 1.1.2+dfsg-2 + _ZN6SeqLib17UnalignedSequenceC2ERKS0_@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib17UnalignedSequenceD1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib17UnalignedSequenceD2Ev@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE12allocate_grcEv@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv@Base 1.1.1+dfsg - _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv@Base 1.1.1+dfsg - _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE7ReadBEDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE7ReadVCFERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg - _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg - _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE@Base 1.1.1+dfsg _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2Ev@Base 1.1.1+dfsg - _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEED1Ev@Base 1.1.1+dfsg - _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEED2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEED2Ev@Base 1.1.1+dfsg + _ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEaSERKS2_@Base 1.1.2+dfsg-2 _ZN6SeqLib3BFC11AddSequenceEPKcS2_S2_@Base 1.1.1+dfsg #MISSING: 1.1.2+dfsg# _ZN6SeqLib3BFC11AddSequenceERKNS_9BamRecordE@Base 1.1.1+dfsg _ZN6SeqLib3BFC11GetSequenceERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_@Base 1.1.2+dfsg @@ -93,9 +101,12 @@ _ZN6SeqLib3BFC5TrainEv@Base 1.1.1+dfsg _ZN6SeqLib3BFC5clearEv@Base 1.1.1+dfsg _ZN6SeqLib4_Bam20open_BAM_for_readingEv@Base 1.1.1+dfsg + _ZN6SeqLib4_Bam5closeEv@Base 1.1.2+dfsg-2 _ZN6SeqLib4_Bam9SetRegionERKNS_13GenomicRegionE@Base 1.1.1+dfsg _ZN6SeqLib4_Bam9load_readERNS_9BamRecordE@Base 1.1.1+dfsg - _ZN6SeqLib4_BamD1Ev@Base 1.1.1+dfsg + _ZN6SeqLib4_BamC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2+dfsg-2 + _ZN6SeqLib4_BamC2ERKS0_@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib4_BamD1Ev@Base 1.1.1+dfsg _ZN6SeqLib4_BamD2Ev@Base 1.1.1+dfsg _ZN6SeqLib5CigarC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2+dfsg _ZN6SeqLib5CigarC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.2+dfsg @@ -103,21 +114,24 @@ _ZN6SeqLib6Filter10ReadFilter10setRegionsERKNS_23GenomicRegionCollectionINS_13GenomicRegionEEE@Base 1.1.1+dfsg _ZN6SeqLib6Filter10ReadFilter7AddRuleERKNS0_12AbstractRuleE@Base 1.1.1+dfsg _ZN6SeqLib6Filter10ReadFilter7isValidERKNS_9BamRecordE@Base 1.1.1+dfsg - _ZN6SeqLib6Filter10ReadFilterC1ERKS1_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib6Filter10ReadFilterC1ERKS1_@Base 1.1.1+dfsg _ZN6SeqLib6Filter10ReadFilterC2ERKS1_@Base 1.1.1+dfsg _ZN6SeqLib6Filter10ReadFilterD1Ev@Base 1.1.1+dfsg _ZN6SeqLib6Filter10ReadFilterD2Ev@Base 1.1.1+dfsg _ZN6SeqLib6Filter11AhoCorasick12TrieFromFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg - _ZN6SeqLib6Filter11AhoCorasickD1Ev@Base 1.1.1+dfsg - _ZN6SeqLib6Filter11AhoCorasickD2Ev@Base 1.1.1+dfsg + _ZN6SeqLib6Filter11AhoCorasickC2ERKS1_@Base 1.1.2+dfsg-2 + _ZN6SeqLib6Filter11AhoCorasickC2Ev@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib6Filter11AhoCorasickD1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib6Filter11AhoCorasickD2Ev@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRule12addMotifRuleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRule12parseSeqLineERKN4Json5ValueE@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRule12parseSubLineERKN4Json5ValueE@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRule7isValidERKNS_9BamRecordE@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRule9parseJsonERKN4Json5ValueE@Base 1.1.1+dfsg - _ZN6SeqLib6Filter12AbstractRuleC1ERKS1_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib6Filter12AbstractRuleC1ERKS1_@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRuleC2ERKS1_@Base 1.1.1+dfsg - _ZN6SeqLib6Filter12AbstractRuleD1Ev@Base 1.1.1+dfsg + _ZN6SeqLib6Filter12AbstractRuleC2Ev@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib6Filter12AbstractRuleD1Ev@Base 1.1.1+dfsg _ZN6SeqLib6Filter12AbstractRuleD2Ev@Base 1.1.1+dfsg _ZN6SeqLib6Filter15convert_to_boolERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZN6SeqLib6Filter20ReadFilterCollection13AddReadFilterERKNS0_10ReadFilterE@Base 1.1.1+dfsg @@ -144,8 +158,9 @@ _ZN6SeqLib9BamHeaderC2EPK9bam_hdr_t@Base 1.1.1+dfsg _ZN6SeqLib9BamHeaderC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZN6SeqLib9BamHeaderC2ERKSt6vectorINS_14HeaderSequenceESaIS2_EE@Base 1.1.1+dfsg - _ZN6SeqLib9BamHeaderD1Ev@Base 1.1.1+dfsg - _ZN6SeqLib9BamHeaderD2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib9BamHeaderD1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN6SeqLib9BamHeaderD2Ev@Base 1.1.1+dfsg + _ZN6SeqLib9BamHeaderaSERKS0_@Base 1.1.2+dfsg-2 _ZN6SeqLib9BamReader13GetNextRecordERNS_9BamRecordE@Base 1.1.1+dfsg _ZN6SeqLib9BamReader16SetCramReferenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZN6SeqLib9BamReader18SetMultipleRegionsERKNS_23GenomicRegionCollectionINS_13GenomicRegionEEE@Base 1.1.1+dfsg @@ -183,11 +198,17 @@ _ZN6SeqLiblsERSoRKNS_10BWAWrapperE@Base 1.1.1+dfsg _ZN6SeqLiblsERSoRKNS_10CigarFieldE@Base 1.1.1+dfsg _ZN6SeqLiblsERSoRKNS_13GenomicRegionE@Base 1.1.1+dfsg + _ZN6SeqLiblsERSoRKNS_15PlottedReadLineE@Base 1.1.2+dfsg-2 _ZN6SeqLiblsERSoRKNS_5CigarE@Base 1.1.1+dfsg _ZN6SeqLiblsERSoRKNS_9BamReaderE@Base 1.1.1+dfsg _ZN6SeqLiblsERSoRKNS_9BamRecordE@Base 1.1.1+dfsg _ZN6SeqLiblsERSoRKNS_9BamWriterE@Base 1.1.1+dfsg - _ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZN9__gnu_cxx6__stoaIlicJiEEET0_PFT_PKT1_PPS3_DpT2_EPKcS5_PmS9_@Base 1.1.1+dfsg + _ZNK12aho_corasick10basic_trieIcE14store_ahoemitsEmPNS_5stateIcEERSt6vectorINS_7ahoemitIcEESaIS7_EE@Base 1.1.2+dfsg-2 + _ZNK12aho_corasick10basic_trieIcE22remove_partial_matchesERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt6vectorINS_7ahoemitIcEESaISB_EE@Base 1.1.2+dfsg-2 + _ZNK12aho_corasick13interval_treeINS_7ahoemitIcEEE4node14check_overlapsERKS2_NS4_9directionE@Base 1.1.2+dfsg-2 + _ZNK12aho_corasick5stateIcE10get_statesEv@Base 1.1.2+dfsg-2 + _ZNK12aho_corasick5stateIcE15get_transitionsEv@Base 1.1.2+dfsg-2 _ZNK6SeqLib10BWAWrapper10WriteIndexERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZNK6SeqLib10BWAWrapper11ChrIDToNameB5cxx11Ei@Base 1.1.1+dfsg _ZNK6SeqLib10BWAWrapper12NumSequencesEv@Base 1.1.1+dfsg @@ -232,10 +253,11 @@ _ZNK6SeqLib9BamReader12HeaderConcatB5cxx11Ev@Base 1.1.1+dfsg _ZNK6SeqLib9BamReader12PrintRegionsB5cxx11Ev@Base 1.1.1+dfsg _ZNK6SeqLib9BamReader6HeaderEv@Base 1.1.1+dfsg + _ZNK6SeqLib9BamRecord11CigarStringB5cxx11Ev@Base 1.1.2+dfsg-2 _ZNK6SeqLib9BamRecord11CountNBasesEv@Base 1.1.1+dfsg _ZNK6SeqLib9BamRecord11PositionEndEv@Base 1.1.2+dfsg _ZNK6SeqLib9BamRecord14GetSmartIntTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg -#MISSING: 1.1.2+dfsg-1# _ZNK6SeqLib9BamRecord14ParseReadGroupB5cxx11Ev@Base 1.1.1+dfsg + _ZNK6SeqLib9BamRecord14ParseReadGroupB5cxx11Ev@Base 1.1.2+dfsg-2 _ZNK6SeqLib9BamRecord15AsGenomicRegionEv@Base 1.1.1+dfsg #MISSING: 1.1.2+dfsg-1# _ZNK6SeqLib9BamRecord15PairOrientationEv@Base 1.1.1+dfsg _ZNK6SeqLib9BamRecord15PositionEndMateEv@Base 1.1.2+dfsg @@ -250,107 +272,131 @@ _ZNK6SeqLib9BamRecord6GetTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS6_@Base 1.1.2+dfsg #MISSING: 1.1.2+dfsg# _ZNK6SeqLib9BamRecord7GetZTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.1+dfsg _ZNK6SeqLib9BamRecord7GetZTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERS6_@Base 1.1.2+dfsg + _ZNK6SeqLib9BamRecord8GetCigarEv@Base 1.1.2+dfsg-2 _ZNK6SeqLib9BamRecord8SequenceB5cxx11Ev@Base 1.1.1+dfsg _ZNK6SeqLib9BamRecord9MeanPhredEv@Base 1.1.1+dfsg _ZNK6SeqLib9BamWriter10BuildIndexEv@Base 1.1.1+dfsg _ZNK6SeqLib9BamWriter11WriteHeaderEv@Base 1.1.1+dfsg _ZNK6SeqLib9RefGenome11QueryRegionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii@Base 1.1.1+dfsg - _ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeEmRS7_m@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# 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_ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.1+dfsg - _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg - _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt15_Sp_counted_ptrIPSt13unordered_mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiSt4hashIS6_ESt8equal_toIS6_ESaISt4pairIKS6_iEEELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg _ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg _ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.1+dfsg _ZNSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIimEESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg 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_ZNSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv@Base 1.1.1+dfsg + _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.2+dfsg-2 _ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.1+dfsg - _ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 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_ZNSt19_Sp_counted_deleterIP9bam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt19_Sp_counted_deleterIP9bam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt19_Sp_counted_deleterIP9bam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.1+dfsg _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.1+dfsg - _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg - _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg - _ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.1+dfsg - _ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.1+dfsg - _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.1+dfsg - _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.1+dfsg - _ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.1+dfsg + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKN12aho_corasick7ahoemitIcEESt6vectorIS6_SaIS6_EEEEPS6_EET0_T_SF_SE_@Base 1.1.2+dfsg-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKN6SeqLib6Filter12AbstractRuleESt6vectorIS6_SaIS6_EEEEPS6_EET0_T_SF_SE_@Base 1.1.2+dfsg-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS6_SaIS6_EEEES7_EET0_T_SD_SC_@Base 1.1.2+dfsg-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIPKN6SeqLib6Filter10ReadFilterEPS4_EET0_T_S9_S8_@Base 1.1.2+dfsg-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIPKN6SeqLib6Filter12AbstractRuleEPS4_EET0_T_S9_S8_@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev@Base 1.1.1+dfsg + _ZNSt5dequeIN4Json6Reader9ErrorInfoESaIS2_EE19_M_destroy_data_auxESt15_Deque_iteratorIS2_RS2_PS2_ES8_@Base 1.1.2+dfsg-2 + _ZNSt5dequeIN4Json6Reader9ErrorInfoESaIS2_EED2Ev@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 1.1.1+dfsg + _ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE17_M_reallocate_mapEmb@Base 1.1.2+dfsg-2 _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.1.1+dfsg _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE9push_backERKS2_@Base 1.1.1+dfsg - _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC1ERKS4_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC1ERKS4_@Base 1.1.1+dfsg _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC2ERKS4_@Base 1.1.1+dfsg - _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.1+dfsg - _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.1+dfsg - _ZNSt6vectorIN6SeqLib10CigarFieldESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorIN6SeqLib10CigarFieldESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.1+dfsg _ZNSt6vectorIN6SeqLib11PlottedReadESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.1+dfsg _ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE15_M_range_insertIN9__gnu_cxx17__normal_iteratorIPS1_S3_EEEEvS8_T_S9_St20forward_iterator_tag@Base 1.1.1+dfsg _ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE15_M_range_insertISt14_List_iteratorIS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EET_SB_St20forward_iterator_tag@Base 1.1.1+dfsg @@ -362,71 +408,96 @@ #MISSING: 1.1.2+dfsg# _ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.1+dfsg _ZNSt6vectorIN6SeqLib6Filter10ReadFilterESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg _ZNSt6vectorIN6SeqLib6Filter12AbstractRuleESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg + _ZNSt6vectorIN6SeqLib6Filter12AbstractRuleESaIS2_EEC2ERKS4_@Base 1.1.2+dfsg-2 _ZNSt6vectorIN6SeqLib9BamRecordESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.2+dfsg _ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EEaSERKS4_@Base 1.1.1+dfsg - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.1.1+dfsg +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.1.1+dfsg _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.1+dfsg _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.1.1+dfsg + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 1.1.2+dfsg-2 +#MISSING: 1.1.2+dfsg-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.1.1+dfsg _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.1.1+dfsg - _ZNSt6vectorIPN12aho_corasick5stateIcEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIPN6SeqLib11PlottedReadESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIPcSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIPcSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIdSaIdEE12emplace_backIJdEEEvDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIdSaIdEE17_M_realloc_insertIJdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIiSaIiEE12emplace_backIJiEEEvDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 1.1.1+dfsg - _ZNSt6vectorImSaImEE17_M_default_appendEm@Base 1.1.2+dfsg - 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+------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 23092 Build-Time: 22 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: libseqlib_1.1.2+dfsg-2 Machine Architecture: amd64 Package: libseqlib Package-Time: 48 Source-Version: 1.1.2+dfsg-2 Space: 23092 Status: attempted Version: 1.1.2+dfsg-2 -------------------------------------------------------------------------------- Finished at 2019-01-09T22:21:28Z Build needed 00:00:48, 23092k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 48.838746888s