DC-Build-Header: pymol 2.2.0+dfsg-4 / 2019-01-09 21:16:40 +0000 DC-Task: type:rebuild-binarch-only source:pymol version:2.2.0+dfsg-4 chroot:unstable esttime:415 logfile:/tmp/pymol_2.2.0+dfsg-4_unstable_clang8.log modes:clang8:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --chroot-setup-commands=/tmp/clang8 pymol_2.2.0+dfsg-4' sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on ip-172-31-12-218.eu-central-1.compute.internal +==============================================================================+ | pymol 2.2.0+dfsg-4 (amd64) Wed, 09 Jan 2019 21:16:40 +0000 | +==============================================================================+ Package: pymol Version: 2.2.0+dfsg-4 Source Version: 2.2.0+dfsg-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-cf56e09c-e273-460b-8f03-790175da6064' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang8 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=8 + echo 'Install of clang-8' Install of clang-8 + echo deb http://127.0.0.1:9999/debian experimental main + apt-get update Get:1 http://127.0.0.1:9999/debian sid InRelease [238 kB] Get:2 http://127.0.0.1:9999/debian experimental InRelease [101 kB] Get:3 http://127.0.0.1:9999/debian sid/main Sources.diff/Index [27.9 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:5 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:5 http://127.0.0.1:9999/debian sid/main Sources 2019-01-09-1430.36.pdiff [24.1 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 Packages 2019-01-09-1430.36.pdiff [40.9 kB] Get:7 http://127.0.0.1:9999/debian sid/main Translation-en [6275 kB] Get:8 http://127.0.0.1:9999/debian experimental/main amd64 Packages [245 kB] Get:9 http://127.0.0.1:9999/debian experimental/main Translation-en [173 kB] Fetched 7153 kB in 2s (3579 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-8 libomp-8-dev libobjc-8-dev Reading package lists... Building dependency tree... The following additional packages will be installed: lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libllvm8 libobjc4 libomp5-8 Suggested packages: clang-8-doc libomp-8-doc Recommended packages: llvm-8-dev python The following NEW packages will be installed: clang-8 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libllvm8 libobjc-8-dev libobjc4 libomp-8-dev libomp5-8 0 upgraded, 14 newly installed, 0 to remove and 5 not upgraded. Need to get 35.8 MB of archives. After this operation, 191 MB of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libbsd0 amd64 0.9.1-1 [99.3 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get:3 http://127.0.0.1:9999/debian experimental/main amd64 libllvm8 amd64 1:8~svn350193-1~exp1 [13.8 MB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libobjc4 amd64 8.2.0-14 [50.4 kB] Get:6 http://127.0.0.1:9999/debian sid/main amd64 libobjc-8-dev amd64 8.2.0-14 [225 kB] Get:7 http://127.0.0.1:9999/debian sid/main amd64 libc6-i386 amd64 2.28-4 [2873 kB] Get:8 http://127.0.0.1:9999/debian sid/main amd64 lib32gcc1 amd64 1:8.2.0-14 [47.9 kB] Get:9 http://127.0.0.1:9999/debian sid/main amd64 lib32stdc++6 amd64 8.2.0-14 [406 kB] Get:10 http://127.0.0.1:9999/debian experimental/main amd64 libclang-common-8-dev amd64 1:8~svn350193-1~exp1 [3350 kB] Get:11 http://127.0.0.1:9999/debian experimental/main amd64 libclang1-8 amd64 1:8~svn350193-1~exp1 [6255 kB] Get:12 http://127.0.0.1:9999/debian experimental/main amd64 clang-8 amd64 1:8~svn350193-1~exp1 [8025 kB] Get:13 http://127.0.0.1:9999/debian experimental/main amd64 libomp5-8 amd64 1:8~svn350193-1~exp1 [328 kB] Get:14 http://127.0.0.1:9999/debian experimental/main amd64 libomp-8-dev amd64 1:8~svn350193-1~exp1 [58.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.8 MB in 0s (115 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11802 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm8:amd64. Preparing to unpack .../02-libllvm8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libllvm8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../03-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../04-libobjc4_8.2.0-14_amd64.deb ... Unpacking libobjc4:amd64 (8.2.0-14) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../05-libobjc-8-dev_8.2.0-14_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.2.0-14) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../06-libc6-i386_2.28-4_amd64.deb ... Unpacking libc6-i386 (2.28-4) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../07-lib32gcc1_1%3a8.2.0-14_amd64.deb ... Unpacking lib32gcc1 (1:8.2.0-14) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../08-lib32stdc++6_8.2.0-14_amd64.deb ... Unpacking lib32stdc++6 (8.2.0-14) ... Selecting previously unselected package libclang-common-8-dev. Preparing to unpack .../09-libclang-common-8-dev_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libclang-common-8-dev (1:8~svn350193-1~exp1) ... Selecting previously unselected package libclang1-8:amd64. Preparing to unpack .../10-libclang1-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libclang1-8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package clang-8. Preparing to unpack .../11-clang-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking clang-8 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libomp5-8:amd64. Preparing to unpack .../12-libomp5-8_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libomp5-8:amd64 (1:8~svn350193-1~exp1) ... Selecting previously unselected package libomp-8-dev. Preparing to unpack .../13-libomp-8-dev_1%3a8~svn350193-1~exp1_amd64.deb ... Unpacking libomp-8-dev (1:8~svn350193-1~exp1) ... Setting up libomp5-8:amd64 (1:8~svn350193-1~exp1) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libc6-i386 (2.28-4) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libomp-8-dev (1:8~svn350193-1~exp1) ... Processing triggers for libc-bin (2.28-4) ... Setting up lib32gcc1 (1:8.2.0-14) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libobjc4:amd64 (8.2.0-14) ... Setting up libobjc-8-dev:amd64 (8.2.0-14) ... Setting up libllvm8:amd64 (1:8~svn350193-1~exp1) ... Setting up libclang1-8:amd64 (1:8~svn350193-1~exp1) ... Setting up lib32stdc++6 (8.2.0-14) ... Setting up libclang-common-8-dev (1:8~svn350193-1~exp1) ... Setting up clang-8 (1:8~svn350193-1~exp1) ... Processing triggers for libc-bin (2.28-4) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-8 g++-4.6 + ln -s clang-8 gcc-4.6 + ln -s clang-8 cpp-4.6 + ln -s clang-8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-8 g++-4.7 + ln -s clang-8 gcc-4.7 + ln -s clang-8 cpp-4.7 + ln -s clang-8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-8 g++-4.8 + ln -s clang-8 gcc-4.8 + ln -s clang-8 cpp-4.8 + ln -s clang-8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-8 g++-4.9 + ln -s clang-8 gcc-4.9 + ln -s clang-8 cpp-4.9 + ln -s clang-8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-8 g++-5 + ln -s clang-8 gcc-5 + ln -s clang-8 cpp-5 + ln -s clang-8 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-8 g++-6 + ln -s clang-8 gcc-6 + ln -s clang-8 cpp-6 + ln -s clang-8 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-8 g++-7 + ln -s clang-8 gcc-7 + ln -s clang-8 cpp-7 + ln -s clang-8 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-8 g++-8 + ln -s clang-8 gcc-8 + ln -s clang-8 cpp-8 + ln -s clang-8 gcc + echo 'gcc-8 hold' + dpkg --set-selections + echo 'g++-8 hold' + dpkg --set-selections + cd - /build/pymol-SPHEhn + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang8'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:9999/debian sid InRelease Hit:2 http://127.0.0.1:9999/debian experimental InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libmpfr6 libpam-modules libpam-modules-bin libpam-runtime libpam0g 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1519 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 http://127.0.0.1:9999/debian sid/main amd64 libpam0g amd64 1.1.8-4 [124 kB] Get:2 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules-bin amd64 1.1.8-4 [106 kB] Get:3 http://127.0.0.1:9999/debian sid/main amd64 libpam-modules amd64 1.1.8-4 [305 kB] Get:4 http://127.0.0.1:9999/debian sid/main amd64 libpam-runtime all 1.1.8-4 [211 kB] Get:5 http://127.0.0.1:9999/debian sid/main amd64 libmpfr6 amd64 4.0.2~rc1-1 [773 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1519 kB in 0s (76.8 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.28-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pymol' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/pymol.git Please use: git clone https://salsa.debian.org/debichem-team/pymol.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 10.3 MB of source archives. Get:1 http://127.0.0.1:9999/debian sid/main pymol 2.2.0+dfsg-4 (dsc) [2423 B] Get:2 http://127.0.0.1:9999/debian sid/main pymol 2.2.0+dfsg-4 (tar) [10.2 MB] Get:3 http://127.0.0.1:9999/debian sid/main pymol 2.2.0+dfsg-4 (diff) [57.7 kB] Fetched 10.3 MB in 1s (11.5 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pymol-SPHEhn/pymol-2.2.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/pymol-SPHEhn' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-llBQz0/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-llBQz0/apt_archive ./ InRelease Get:2 copy:/<>/resolver-llBQz0/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-llBQz0/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-llBQz0/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-llBQz0/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-llBQz0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12592 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libpng-dev, python, python-dev, python-numpy, python-opengl, python-pyqt5, python-pyqt5.qtopengl, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev Filtered Build-Depends: debhelper (>= 11~), dh-python, freeglut3-dev, libfreetype6-dev, libglew1.5-dev, libglm-dev, libpng-dev, python, python-dev, python-numpy, python-opengl, python-pyqt5, python-pyqt5.qtopengl, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev dpkg-deb: building package 'sbuild-build-depends-pymol-dummy' in '/<>/resolver-llBQz0/apt_archive/sbuild-build-depends-pymol-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-pymol-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-llBQz0/apt_archive ./ InRelease Get:2 copy:/<>/resolver-llBQz0/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-llBQz0/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-llBQz0/apt_archive ./ Sources [597 B] Get:5 copy:/<>/resolver-llBQz0/apt_archive ./ Packages [684 B] Fetched 2244 B in 0s (0 B/s) Reading package lists... Reading package lists... Install pymol build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libcairo2 libcroco3 libcups2 libcupsimage2 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libegl-mesa0 libegl1 libelf1 libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfreetype6-dev libgbm1 libgfortran5 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libgles1 libgles2 libglew-dev libglew2.1 libglib2.0-0 libglm-dev libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgudev-1.0-0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu63 libidn11 libijs-0.35 libinput-bin libinput10 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libllvm7 libmagic-mgc libmagic1 libmpdec2 libmtdev1 libncurses6 libopengl0 libopenjp2-7 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 libreadline7 libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.1 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util0 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4 libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libxxhash0 libzzip-0-13 lsb-base m4 man-db mesa-common-dev mime-support po-debconf poppler-data python python-dev python-enum34 python-minimal python-numpy python-opengl python-pkg-resources python-pyqt5 python-pyqt5.qtopengl python-sip python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl python3-sip python3.7 python3.7-dev python3.7-minimal readline-common sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff cups-common glew-utils krb5-doc krb5-user libice-doc icu-doc liblcms2-utils pciutils libthai0 qt5-image-formats-plugins qtwayland5 libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc pkg-config libxt-doc m4-doc apparmor less www-browser libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python-enum34-doc gfortran python-pytest python-numpy-dbg python-numpy-doc libgle3 python-setuptools python-pyqt5-dbg python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3-pytest python3-numpy-dbg python3-setuptools python3-pyqt5-dbg python3.7-venv python3.7-doc readline-doc gv | postscript-viewer perl-tk xpdf-reader | pdf-viewer texlive-latex-base-doc Recommended packages: curl | wget | lynx libcupsfilters1 dbus libarchive-cpio-perl freetype2-doc libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libgpm2 libpng-tools qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libltdl-dev libwacom-bin libmail-sendmail-perl lmodern libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern freeglut3 freeglut3-dev gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbrotli1 libcairo2 libcroco3 libcups2 libcupsimage2 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libegl-mesa0 libegl1 libelf1 libevdev2 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfreetype6-dev libgbm1 libgfortran5 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libgles1 libgles2 libglew-dev libglew2.1 libglib2.0-0 libglm-dev libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgudev-1.0-0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu63 libidn11 libijs-0.35 libinput-bin libinput10 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libllvm7 libmagic-mgc libmagic1 libmpdec2 libmtdev1 libncurses6 libopengl0 libopenjp2-7 libpaper-utils libpaper1 libpciaccess0 libpcre2-16-0 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpotrace0 libptexenc1 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib libqt5core5a libqt5dbus5 libqt5designer5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5printsupport5 libqt5sql5 libqt5test5 libqt5widgets5 libqt5xml5 libreadline7 libsigsegv2 libsm-dev libsm6 libsqlite3-0 libssl1.1 libsynctex2 libteckit0 libtexlua52 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util0 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxml2-dev libxmu6 libxpm4 libxrender1 libxshmfence-dev libxshmfence1 libxt-dev libxt6 libxxf86vm-dev libxxf86vm1 libxxhash0 libzzip-0-13 lsb-base m4 man-db mesa-common-dev mime-support po-debconf poppler-data python python-dev python-enum34 python-minimal python-numpy python-opengl python-pkg-resources python-pyqt5 python-pyqt5.qtopengl python-sip python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-opengl python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl python3-sip python3.7 python3.7-dev python3.7-minimal readline-common sbuild-build-depends-pymol-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. Need to get 237 MB of archives. After this operation, 875 MB of additional disk space will be used. 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http://127.0.0.1:9999/debian sid/main amd64 tex-common all 6.10 [53.0 kB] Get:35 http://127.0.0.1:9999/debian sid/main amd64 libmagic-mgc amd64 1:5.34-2 [239 kB] Get:36 http://127.0.0.1:9999/debian sid/main amd64 libmagic1 amd64 1:5.34-2 [116 kB] Get:37 http://127.0.0.1:9999/debian sid/main amd64 file amd64 1:5.34-2 [65.8 kB] Get:38 http://127.0.0.1:9999/debian sid/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:39 http://127.0.0.1:9999/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:40 http://127.0.0.1:9999/debian sid/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:41 http://127.0.0.1:9999/debian sid/main amd64 autoconf all 2.69-11 [341 kB] Get:42 http://127.0.0.1:9999/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:43 http://127.0.0.1:9999/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:44 http://127.0.0.1:9999/debian sid/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:45 http://127.0.0.1:9999/debian sid/main amd64 libtool all 2.4.6-6 [547 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sid/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get:69 http://127.0.0.1:9999/debian sid/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get:70 http://127.0.0.1:9999/debian sid/main amd64 fonts-lmodern all 2.004.5-5 [4539 kB] Get:71 http://127.0.0.1:9999/debian sid/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get:72 http://127.0.0.1:9999/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:73 http://127.0.0.1:9999/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:74 http://127.0.0.1:9999/debian sid/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:75 http://127.0.0.1:9999/debian sid/main amd64 libx11-data all 2:1.6.7-1 [298 kB] Get:76 http://127.0.0.1:9999/debian sid/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB] Get:77 http://127.0.0.1:9999/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:78 http://127.0.0.1:9999/debian sid/main amd64 libdrm-common all 2.4.95-1 [13.7 kB] Get:79 http://127.0.0.1:9999/debian sid/main amd64 libdrm2 amd64 2.4.95-1 [39.5 kB] Get:80 http://127.0.0.1:9999/debian sid/main amd64 libglapi-mesa amd64 18.2.8-2 [64.6 kB] Get:81 http://127.0.0.1:9999/debian sid/main amd64 libx11-xcb1 amd64 2:1.6.7-1 [190 kB] Get:82 http://127.0.0.1:9999/debian sid/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get:83 http://127.0.0.1:9999/debian sid/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get:84 http://127.0.0.1:9999/debian sid/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get:85 http://127.0.0.1:9999/debian sid/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get:86 http://127.0.0.1:9999/debian sid/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get:87 http://127.0.0.1:9999/debian sid/main amd64 libxcb-xfixes0 amd64 1.13.1-2 [103 kB] Get:88 http://127.0.0.1:9999/debian sid/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get:89 http://127.0.0.1:9999/debian sid/main amd64 libxdamage1 amd64 1:1.1.4-3 [14.4 kB] Get:90 http://127.0.0.1:9999/debian sid/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:91 http://127.0.0.1:9999/debian sid/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:92 http://127.0.0.1:9999/debian sid/main amd64 libdrm-amdgpu1 amd64 2.4.95-1 [27.1 kB] Get:93 http://127.0.0.1:9999/debian sid/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:94 http://127.0.0.1:9999/debian sid/main amd64 libdrm-intel1 amd64 2.4.95-1 [69.7 kB] Get:95 http://127.0.0.1:9999/debian sid/main amd64 libdrm-nouveau2 amd64 2.4.95-1 [26.3 kB] Get:96 http://127.0.0.1:9999/debian sid/main amd64 libdrm-radeon1 amd64 2.4.95-1 [31.1 kB] Get:97 http://127.0.0.1:9999/debian sid/main amd64 libllvm7 amd64 1:7.0.1-4 [13.0 MB] Get:98 http://127.0.0.1:9999/debian sid/main amd64 libgl1-mesa-dri amd64 18.2.8-2 [6626 kB] Get:99 http://127.0.0.1:9999/debian sid/main amd64 libglx-mesa0 amd64 18.2.8-2 [177 kB] Get:100 http://127.0.0.1:9999/debian sid/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get:101 http://127.0.0.1:9999/debian sid/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get:102 http://127.0.0.1:9999/debian sid/main amd64 libgl1-mesa-glx amd64 18.2.8-2 [46.1 kB] Get:103 http://127.0.0.1:9999/debian sid/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:104 http://127.0.0.1:9999/debian sid/main amd64 freeglut3 amd64 2.8.1-3 [123 kB] Get:105 http://127.0.0.1:9999/debian sid/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get:106 http://127.0.0.1:9999/debian sid/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get:107 http://127.0.0.1:9999/debian sid/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get:108 http://127.0.0.1:9999/debian sid/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get:109 http://127.0.0.1:9999/debian sid/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:110 http://127.0.0.1:9999/debian sid/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get:111 http://127.0.0.1:9999/debian sid/main amd64 libpthread-stubs0-dev amd64 0.3-4 [3866 B] Get:112 http://127.0.0.1:9999/debian sid/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get:113 http://127.0.0.1:9999/debian sid/main amd64 libx11-dev amd64 2:1.6.7-1 [827 kB] Get:114 http://127.0.0.1:9999/debian sid/main amd64 libdrm-dev amd64 2.4.95-1 [131 kB] Get:115 http://127.0.0.1:9999/debian sid/main amd64 mesa-common-dev amd64 18.2.8-2 [601 kB] Get:116 http://127.0.0.1:9999/debian sid/main amd64 libglvnd-core-dev amd64 1.1.0-1 [13.2 kB] Get:117 http://127.0.0.1:9999/debian sid/main amd64 libwayland-server0 amd64 1.16.0-1 [32.5 kB] Get:118 http://127.0.0.1:9999/debian sid/main amd64 libgbm1 amd64 18.2.8-2 [65.7 kB] Get:119 http://127.0.0.1:9999/debian sid/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get:120 http://127.0.0.1:9999/debian sid/main amd64 libegl-mesa0 amd64 18.2.8-2 [130 kB] Get:121 http://127.0.0.1:9999/debian sid/main amd64 libegl1 amd64 1.1.0-1 [33.6 kB] Get:122 http://127.0.0.1:9999/debian sid/main amd64 libgles1 amd64 1.1.0-1 [13.8 kB] Get:123 http://127.0.0.1:9999/debian sid/main amd64 libgles2 amd64 1.1.0-1 [19.0 kB] Get:124 http://127.0.0.1:9999/debian sid/main amd64 libopengl0 amd64 1.1.0-1 [33.4 kB] Get:125 http://127.0.0.1:9999/debian sid/main amd64 libglvnd-dev amd64 1.1.0-1 [5128 B] Get:126 http://127.0.0.1:9999/debian sid/main amd64 libx11-xcb-dev amd64 2:1.6.7-1 [192 kB] Get:127 http://127.0.0.1:9999/debian sid/main amd64 libxcb-dri3-dev amd64 1.13.1-2 [101 kB] Get:128 http://127.0.0.1:9999/debian sid/main amd64 libxcb-randr0 amd64 1.13.1-2 [110 kB] Get:129 http://127.0.0.1:9999/debian sid/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:130 http://127.0.0.1:9999/debian sid/main amd64 libxcb-render0-dev amd64 1.13.1-2 [112 kB] Get:131 http://127.0.0.1:9999/debian sid/main amd64 libxcb-randr0-dev amd64 1.13.1-2 [114 kB] Get:132 http://127.0.0.1:9999/debian sid/main amd64 libxcb-shape0 amd64 1.13.1-2 [99.5 kB] Get:133 http://127.0.0.1:9999/debian sid/main amd64 libxcb-shape0-dev amd64 1.13.1-2 [101 kB] Get:134 http://127.0.0.1:9999/debian sid/main amd64 libxcb-xfixes0-dev amd64 1.13.1-2 [105 kB] Get:135 http://127.0.0.1:9999/debian sid/main amd64 libxcb-sync-dev amd64 1.13.1-2 [104 kB] Get:136 http://127.0.0.1:9999/debian sid/main amd64 libxcb-present-dev amd64 1.13.1-2 [101 kB] Get:137 http://127.0.0.1:9999/debian sid/main amd64 libxshmfence-dev amd64 1.3-1 [8360 B] Get:138 http://127.0.0.1:9999/debian sid/main amd64 libxcb-dri2-0-dev amd64 1.13.1-2 [102 kB] Get:139 http://127.0.0.1:9999/debian sid/main amd64 libxcb-glx0-dev amd64 1.13.1-2 [122 kB] Get:140 http://127.0.0.1:9999/debian sid/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get:141 http://127.0.0.1:9999/debian sid/main amd64 libxfixes-dev amd64 1:5.0.3-1 [23.8 kB] Get:142 http://127.0.0.1:9999/debian sid/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get:143 http://127.0.0.1:9999/debian sid/main amd64 libxdamage-dev amd64 1:1.1.4-3 [14.3 kB] Get:144 http://127.0.0.1:9999/debian sid/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get:145 http://127.0.0.1:9999/debian sid/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB] Get:146 http://127.0.0.1:9999/debian sid/main amd64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B] Get:147 http://127.0.0.1:9999/debian sid/main amd64 libxxf86vm-dev amd64 1:1.1.4-1+b2 [25.4 kB] Get:148 http://127.0.0.1:9999/debian sid/main amd64 libgl1-mesa-dev amd64 18.2.8-2 [46.8 kB] Get:149 http://127.0.0.1:9999/debian sid/main amd64 libglu1-mesa amd64 9.0.0-2.1 [168 kB] Get:150 http://127.0.0.1:9999/debian sid/main amd64 libglu1-mesa-dev amd64 9.0.0-2.1 [202 kB] Get:151 http://127.0.0.1:9999/debian sid/main amd64 lsb-base all 10.2018112800 [28.3 kB] Get:152 http://127.0.0.1:9999/debian sid/main amd64 x11-common all 1:7.7+19 [251 kB] Get:153 http://127.0.0.1:9999/debian sid/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:154 http://127.0.0.1:9999/debian sid/main amd64 libsm6 amd64 2:1.2.2-1+b3 [33.3 kB] Get:155 http://127.0.0.1:9999/debian sid/main amd64 libxt6 amd64 1:1.1.5-1 [188 kB] Get:156 http://127.0.0.1:9999/debian sid/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB] Get:157 http://127.0.0.1:9999/debian sid/main amd64 libsm-dev amd64 2:1.2.2-1+b3 [35.8 kB] Get:158 http://127.0.0.1:9999/debian sid/main amd64 libxt-dev amd64 1:1.1.5-1 [423 kB] Get:159 http://127.0.0.1:9999/debian sid/main amd64 freeglut3-dev amd64 2.8.1-3 [177 kB] Get:160 http://127.0.0.1:9999/debian sid/main amd64 icu-devtools amd64 63.1-5 [191 kB] Get:161 http://127.0.0.1:9999/debian sid/main amd64 libavahi-common-data amd64 0.7-4+b1 [122 kB] Get:162 http://127.0.0.1:9999/debian sid/main amd64 libavahi-common3 amd64 0.7-4+b1 [54.6 kB] Get:163 http://127.0.0.1:9999/debian sid/main amd64 libdbus-1-3 amd64 1.12.12-1 [212 kB] Get:164 http://127.0.0.1:9999/debian sid/main amd64 libavahi-client3 amd64 0.7-4+b1 [58.1 kB] Get:165 http://127.0.0.1:9999/debian sid/main amd64 libgfortran5 amd64 8.2.0-14 [581 kB] Get:166 http://127.0.0.1:9999/debian sid/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get:167 http://127.0.0.1:9999/debian sid/main amd64 libbrotli1 amd64 1.0.7-2 [270 kB] Get:168 http://127.0.0.1:9999/debian sid/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:169 http://127.0.0.1:9999/debian sid/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:170 http://127.0.0.1:9999/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:171 http://127.0.0.1:9999/debian sid/main amd64 libcairo2 amd64 1.16.0-2 [690 kB] Get:172 http://127.0.0.1:9999/debian sid/main amd64 libkeyutils1 amd64 1.5.9-9.3 [13.0 kB] Get:173 http://127.0.0.1:9999/debian sid/main amd64 libkrb5support0 amd64 1.16.2-1 [63.3 kB] Get:174 http://127.0.0.1:9999/debian sid/main amd64 libk5crypto3 amd64 1.16.2-1 [121 kB] Get:175 http://127.0.0.1:9999/debian sid/main amd64 libkrb5-3 amd64 1.16.2-1 [320 kB] Get:176 http://127.0.0.1:9999/debian sid/main amd64 libgssapi-krb5-2 amd64 1.16.2-1 [158 kB] Get:177 http://127.0.0.1:9999/debian sid/main amd64 libcups2 amd64 2.2.10-3 [324 kB] Get:178 http://127.0.0.1:9999/debian sid/main amd64 libcupsimage2 amd64 2.2.10-3 [132 kB] Get:179 http://127.0.0.1:9999/debian sid/main amd64 libdouble-conversion1 amd64 3.1.0-2 [39.4 kB] Get:180 http://127.0.0.1:9999/debian sid/main amd64 libevdev2 amd64 1.6.0+dfsg-1 [31.0 kB] Get:181 http://127.0.0.1:9999/debian sid/main amd64 libexpat1-dev amd64 2.2.6-1 [152 kB] Get:182 http://127.0.0.1:9999/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get:183 http://127.0.0.1:9999/debian sid/main amd64 libpng-dev amd64 1.6.36-2 [300 kB] Get:184 http://127.0.0.1:9999/debian sid/main amd64 libfreetype6-dev amd64 2.9.1-3 [543 kB] Get:185 http://127.0.0.1:9999/debian sid/main amd64 libglew2.1 amd64 2.1.0-3 [161 kB] Get:186 http://127.0.0.1:9999/debian sid/main amd64 libglew-dev amd64 2.1.0-3 [141 kB] Get:187 http://127.0.0.1:9999/debian sid/main amd64 libglm-dev all 0.9.9~a2-2 [164 kB] Get:188 http://127.0.0.1:9999/debian sid/main amd64 libgraphite2-3 amd64 1.3.12-1 [80.2 kB] Get:189 http://127.0.0.1:9999/debian sid/main amd64 libgs9-common all 9.26~dfsg-2 [5137 kB] Get:190 http://127.0.0.1:9999/debian sid/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:191 http://127.0.0.1:9999/debian sid/main amd64 libijs-0.35 amd64 0.35-13 [18.5 kB] Get:192 http://127.0.0.1:9999/debian sid/main amd64 libjbig2dec0 amd64 0.15-2 [61.7 kB] Get:193 http://127.0.0.1:9999/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:194 http://127.0.0.1:9999/debian sid/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get:195 http://127.0.0.1:9999/debian sid/main amd64 libopenjp2-7 amd64 2.3.0-1.1 [158 kB] Get:196 http://127.0.0.1:9999/debian sid/main amd64 libpaper1 amd64 1.1.26 [20.8 kB] Get:197 http://127.0.0.1:9999/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:198 http://127.0.0.1:9999/debian sid/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get:199 http://127.0.0.1:9999/debian sid/main amd64 libtiff5 amd64 4.0.10-3 [257 kB] Get:200 http://127.0.0.1:9999/debian sid/main amd64 libgs9 amd64 9.26~dfsg-2 [2198 kB] Get:201 http://127.0.0.1:9999/debian sid/main amd64 libgudev-1.0-0 amd64 232-2 [13.6 kB] Get:202 http://127.0.0.1:9999/debian sid/main amd64 libharfbuzz0b amd64 2.3.0-1 [1176 kB] Get:203 http://127.0.0.1:9999/debian sid/main amd64 libharfbuzz-icu0 amd64 2.3.0-1 [817 kB] Get:204 http://127.0.0.1:9999/debian sid/main amd64 libicu-dev amd64 63.1-5 [9188 kB] Get:205 http://127.0.0.1:9999/debian sid/main amd64 libwacom-common all 0.31-1 [38.6 kB] Get:206 http://127.0.0.1:9999/debian sid/main amd64 libwacom2 amd64 0.31-1 [18.8 kB] Get:207 http://127.0.0.1:9999/debian sid/main amd64 libinput-bin amd64 1.12.4-1 [16.4 kB] Get:208 http://127.0.0.1:9999/debian sid/main amd64 libmtdev1 amd64 1.1.5-1+b1 [22.3 kB] Get:209 http://127.0.0.1:9999/debian sid/main amd64 libinput10 amd64 1.12.4-1 [106 kB] Get:210 http://127.0.0.1:9999/debian sid/main amd64 libkpathsea6 amd64 2018.20181218.49446-1 [167 kB] Get:211 http://127.0.0.1:9999/debian sid/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get:212 http://127.0.0.1:9999/debian sid/main amd64 libpaper-utils amd64 1.1.26 [17.9 kB] Get:213 http://127.0.0.1:9999/debian sid/main amd64 libpcre2-16-0 amd64 10.32-3 [202 kB] Get:214 http://127.0.0.1:9999/debian sid/main amd64 libpotrace0 amd64 1.15-1 [26.3 kB] Get:215 http://127.0.0.1:9999/debian sid/main amd64 libptexenc1 amd64 2018.20181218.49446-1 [61.0 kB] Get:216 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7 amd64 2.7.15-5 [1035 kB] Get:217 http://127.0.0.1:9999/debian sid/main amd64 libpython2.7-dev amd64 2.7.15-5 [31.5 MB] Get:218 http://127.0.0.1:9999/debian sid/main amd64 libpython2-dev amd64 2.7.15-3 [20.8 kB] Get:219 http://127.0.0.1:9999/debian sid/main amd64 libpython-dev amd64 2.7.15-3 [20.8 kB] Get:220 http://127.0.0.1:9999/debian sid/main amd64 libpython3.7 amd64 3.7.2-1 [1494 kB] Get:221 http://127.0.0.1:9999/debian sid/main amd64 libpython3.7-dev amd64 3.7.2-1 [48.4 MB] Get:222 http://127.0.0.1:9999/debian sid/main amd64 libpython3-dev amd64 3.7.1-3 [20.1 kB] Get:223 http://127.0.0.1:9999/debian sid/main amd64 libpython3-all-dev amd64 3.7.1-3 [1068 B] Get:224 http://127.0.0.1:9999/debian sid/main amd64 libqt5core5a amd64 5.11.3+dfsg-2 [1943 kB] Get:225 http://127.0.0.1:9999/debian sid/main amd64 libqt5dbus5 amd64 5.11.3+dfsg-2 [228 kB] Get:226 http://127.0.0.1:9999/debian sid/main amd64 libqt5network5 amd64 5.11.3+dfsg-2 [678 kB] Get:227 http://127.0.0.1:9999/debian sid/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [27.4 kB] Get:228 http://127.0.0.1:9999/debian sid/main amd64 libxcb-util0 amd64 0.3.8-3+b2 [23.0 kB] Get:229 http://127.0.0.1:9999/debian sid/main amd64 libxcb-image0 amd64 0.4.0-1+b2 [24.4 kB] Get:230 http://127.0.0.1:9999/debian sid/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get:231 http://127.0.0.1:9999/debian sid/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get:232 http://127.0.0.1:9999/debian sid/main amd64 libxcb-xinerama0 amd64 1.13.1-2 [98.9 kB] Get:233 http://127.0.0.1:9999/debian sid/main amd64 libxcb-xkb1 amd64 1.13.1-2 [123 kB] Get:234 http://127.0.0.1:9999/debian sid/main amd64 xkb-data all 2.23.1-1 [675 kB] Get:235 http://127.0.0.1:9999/debian sid/main amd64 libxkbcommon0 amd64 0.8.2-1 [123 kB] Get:236 http://127.0.0.1:9999/debian sid/main amd64 libxkbcommon-x11-0 amd64 0.8.2-1 [39.4 kB] Get:237 http://127.0.0.1:9999/debian sid/main amd64 libqt5gui5 amd64 5.11.3+dfsg-2 [2842 kB] Get:238 http://127.0.0.1:9999/debian sid/main amd64 libqt5widgets5 amd64 5.11.3+dfsg-2 [2262 kB] Get:239 http://127.0.0.1:9999/debian sid/main amd64 libqt5xml5 amd64 5.11.3+dfsg-2 [128 kB] Get:240 http://127.0.0.1:9999/debian sid/main amd64 libqt5designer5 amd64 5.11.3-2 [2783 kB] Get:241 http://127.0.0.1:9999/debian sid/main amd64 libqt5sql5 amd64 5.11.3+dfsg-2 [145 kB] Get:242 http://127.0.0.1:9999/debian sid/main amd64 libqt5help5 amd64 5.11.3-2 [149 kB] Get:243 http://127.0.0.1:9999/debian sid/main amd64 libqt5opengl5 amd64 5.11.3+dfsg-2 [161 kB] Get:244 http://127.0.0.1:9999/debian sid/main amd64 libqt5printsupport5 amd64 5.11.3+dfsg-2 [217 kB] Get:245 http://127.0.0.1:9999/debian sid/main amd64 libqt5test5 amd64 5.11.3+dfsg-2 [152 kB] Get:246 http://127.0.0.1:9999/debian sid/main amd64 libsynctex2 amd64 2018.20181218.49446-1 [80.5 kB] Get:247 http://127.0.0.1:9999/debian sid/main amd64 libteckit0 amd64 2.5.8+ds2-5 [318 kB] Get:248 http://127.0.0.1:9999/debian sid/main amd64 libtexlua52 amd64 2018.20181218.49446-1 [112 kB] Get:249 http://127.0.0.1:9999/debian sid/main amd64 libtexlua53 amd64 2018.20181218.49446-1 [126 kB] Get:250 http://127.0.0.1:9999/debian sid/main amd64 libtexluajit2 amd64 2018.20181218.49446-1 [256 kB] Get:251 http://127.0.0.1:9999/debian sid/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get:252 http://127.0.0.1:9999/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2 [60.3 kB] Get:253 http://127.0.0.1:9999/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:254 http://127.0.0.1:9999/debian sid/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:255 http://127.0.0.1:9999/debian sid/main amd64 libxml2-dev amd64 2.9.4+dfsg1-7+b3 [783 kB] Get:256 http://127.0.0.1:9999/debian sid/main amd64 libxxhash0 amd64 0.6.5-2 [7156 B] Get:257 http://127.0.0.1:9999/debian sid/main amd64 libzzip-0-13 amd64 0.13.62-3.1 [55.4 kB] Get:258 http://127.0.0.1:9999/debian sid/main amd64 python2.7-dev amd64 2.7.15-5 [291 kB] Get:259 http://127.0.0.1:9999/debian sid/main amd64 python2-dev amd64 2.7.15-3 [1212 B] Get:260 http://127.0.0.1:9999/debian sid/main amd64 python-dev amd64 2.7.15-3 [1192 B] Get:261 http://127.0.0.1:9999/debian sid/main amd64 python-enum34 all 1.1.6-2 [35.3 kB] Get:262 http://127.0.0.1:9999/debian sid/main amd64 python-pkg-resources all 40.6.2-1 [181 kB] Get:263 http://127.0.0.1:9999/debian sid/main amd64 python-numpy amd64 1:1.16.0~rc2-1 [2109 kB] Get:264 http://127.0.0.1:9999/debian sid/main amd64 python-opengl all 3.1.0+dfsg-2 [490 kB] Get:265 http://127.0.0.1:9999/debian sid/main amd64 python-sip amd64 4.19.13+dfsg-1 [167 kB] Get:266 http://127.0.0.1:9999/debian sid/main amd64 python-pyqt5 amd64 5.11.3+dfsg-1+b3 [2238 kB] Get:267 http://127.0.0.1:9999/debian sid/main amd64 python-pyqt5.qtopengl amd64 5.11.3+dfsg-1+b3 [180 kB] Get:268 http://127.0.0.1:9999/debian sid/main amd64 python3-all amd64 3.7.1-3 [1064 B] Get:269 http://127.0.0.1:9999/debian sid/main amd64 python3.7-dev amd64 3.7.2-1 [509 kB] Get:270 http://127.0.0.1:9999/debian sid/main amd64 python3-dev amd64 3.7.1-3 [1260 B] Get:271 http://127.0.0.1:9999/debian sid/main amd64 python3-all-dev amd64 3.7.1-3 [1068 B] Get:272 http://127.0.0.1:9999/debian sid/main amd64 python3-pkg-resources all 40.6.2-1 [152 kB] Get:273 http://127.0.0.1:9999/debian sid/main amd64 python3-numpy amd64 1:1.16.0~rc2-1 [2119 kB] Get:274 http://127.0.0.1:9999/debian sid/main amd64 python3-opengl all 3.1.0+dfsg-2 [491 kB] Get:275 http://127.0.0.1:9999/debian sid/main amd64 python3-sip amd64 4.19.13+dfsg-1 [181 kB] Get:276 http://127.0.0.1:9999/debian sid/main amd64 python3-pyqt5 amd64 5.11.3+dfsg-1+b3 [2380 kB] Get:277 http://127.0.0.1:9999/debian sid/main amd64 python3-pyqt5.qtopengl amd64 5.11.3+dfsg-1+b3 [182 kB] Get:278 http://127.0.0.1:9999/debian sid/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:279 http://127.0.0.1:9999/debian sid/main amd64 texlive-binaries amd64 2018.20181218.49446-1 [11.3 MB] Get:280 http://127.0.0.1:9999/debian sid/main amd64 xdg-utils all 1.1.3-1 [73.3 kB] Get:281 http://127.0.0.1:9999/debian sid/main amd64 texlive-base all 2018.20181214-1 [19.4 MB] Get:282 http://127.0.0.1:9999/debian sid/main amd64 texlive-latex-base all 2018.20181214-1 [985 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 237 MB in 3s (92.3 MB/s) Selecting previously unselected package bsdmainutils. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libzzip-0-13:amd64 (0.13.62-3.1) ... Setting up xdg-utils (1.1.3-1) ... Setting up libgfortran5:amd64 (8.2.0-14) ... Setting up libglvnd-core-dev:amd64 (1.1.0-1) ... Setting up libpcre2-16-0:amd64 (10.32-3) ... Setting up libncurses6:amd64 (6.1+20181013-1) ... Setting up libtexluajit2:amd64 (2018.20181218.49446-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.15-5) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libdbus-1-3:amd64 (1.12.12-1) ... Setting up fonts-lmodern (2.004.5-5) ... Setting up libavahi-common-data:amd64 (0.7-4+b1) ... Setting up libwayland-server0:amd64 (1.16.0-1) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libqt5core5a:amd64 (5.11.3+dfsg-2) ... Setting up libqt5dbus5:amd64 (5.11.3+dfsg-2) ... Setting up libpython3.7-stdlib:amd64 (3.7.2-1) ... Setting up libqt5network5:amd64 (5.11.3+dfsg-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libwacom2:amd64 (0.31-1) ... Setting up libxshmfence-dev:amd64 (1.3-1) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libqt5test5:amd64 (5.11.3+dfsg-2) ... Setting up python2.7 (2.7.15-5) ... Setting up libharfbuzz0b:amd64 (2.3.0-1) ... Setting up libtiff5:amd64 (4.0.10-3) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up python3.7 (3.7.2-1) ... Setting up autoconf (2.69-11) ... Setting up libicu-dev (63.1-5) ... Setting up file (1:5.34-2) ... Setting up libinput-bin (1.12.4-1) ... Setting up libkrb5support0:amd64 (1.16.2-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libdrm2:amd64 (2.4.95-1) ... Setting up libxml2-dev:amd64 (2.9.4+dfsg1-7+b3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:amd64 (2.4.95-1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libqt5xml5:amd64 (5.11.3+dfsg-2) ... Setting up libpython3.7:amd64 (3.7.2-1) ... Setting up libpython2.7:amd64 (2.7.15-5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libqt5sql5:amd64 (5.11.3+dfsg-2) ... Setting up libpython3.7-dev:amd64 (3.7.2-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:amd64 (2.7.15-3) ... Setting up libpython2.7-dev:amd64 (2.7.15-5) ... Setting up libavahi-common3:amd64 (0.7-4+b1) ... Setting up libdrm-radeon1:amd64 (2.4.95-1) ... Setting up libpng-dev:amd64 (1.6.36-2) ... Setting up libdrm-nouveau2:amd64 (2.4.95-1) ... Setting up python2.7-dev (2.7.15-5) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libpython3-dev:amd64 (3.7.1-3) ... Setting up libxcb-xkb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-6) ... Setting up libxcb-xinerama0:amd64 (1.13.1-2) ... Setting up libpaper1:amd64 (1.1.26) ... Creating config file /etc/papersize with new version Setting up libpython3-stdlib:amd64 (3.7.1-3) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libsm6:amd64 (2:1.2.2-1+b3) ... Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libk5crypto3:amd64 (1.16.2-1) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libxcb-randr0:amd64 (1.13.1-2) ... Setting up libpaper-utils (1.1.26) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxcb-xfixes0:amd64 (1.13.1-2) ... Setting up libxcb-icccm4:amd64 (0.4.1-1.1) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libxcb-util0:amd64 (0.3.8-3+b2) ... Setting up libharfbuzz-icu0:amd64 (2.3.0-1) ... Setting up tex-common (6.10) ... update-language: texlive-base not installed and configured, doing nothing! Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-3) ... Setting up libdrm-amdgpu1:amd64 (2.4.95-1) ... Setting up libdrm-dev:amd64 (2.4.95-1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libgbm1:amd64 (18.2.8-2) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libinput10:amd64 (1.12.4-1) ... Setting up libgl1-mesa-dri:amd64 (18.2.8-2) ... Setting up python3-pkg-resources (40.6.2-1) ... Setting up python3.7-dev (3.7.2-1) ... Setting up libxkbcommon-x11-0:amd64 (0.8.2-1) ... Setting up python2 (2.7.15-3) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up libpython2-dev:amd64 (2.7.15-3) ... Setting up libpython-stdlib:amd64 (2.7.15-3) ... Setting up libpython3-all-dev:amd64 (3.7.1-3) ... Setting up libfreetype6-dev:amd64 (2.9.1-3) ... Setting up libice-dev:amd64 (2:1.0.9-2) ... Setting up python2-dev (2.7.15-3) ... Setting up python3-sip (4.19.13+dfsg-1) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxcb-shape0:amd64 (1.13.1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxcb1-dev:amd64 (1.13.1-2) ... Setting up libxcb-glx0-dev:amd64 (1.13.1-2) ... Setting up libavahi-client3:amd64 (0.7-4+b1) ... Setting up libxcb-keysyms1:amd64 (0.4.0-1+b2) ... Setting up libkrb5-3:amd64 (1.16.2-1) ... Setting up libegl-mesa0:amd64 (18.2.8-2) ... Setting up libx11-dev:amd64 (2:1.6.7-1) ... Setting up python3-lib2to3 (3.7.2-2) ... Setting up python3-distutils (3.7.2-2) ... Setting up python (2.7.15-3) ... Setting up libxcb-sync-dev:amd64 (1.13.1-2) ... Setting up libx11-xcb-dev:amd64 (2:1.6.7-1) ... Setting up libpython-dev:amd64 (2.7.15-3) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libsm-dev:amd64 (2:1.2.2-1+b3) ... Setting up libxcb-render-util0:amd64 (0.3.9-1+b1) ... Setting up libxcb-image0:amd64 (0.4.0-1+b2) ... Setting up mesa-common-dev:amd64 (18.2.8-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up python3-numpy (1:1.16.0~rc2-1) ... Setting up python-dev (2.7.15-3) ... Setting up python-pkg-resources (40.6.2-1) ... Setting up python-numpy (1:1.16.0~rc2-1) ... Setting up libxmu6:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.16.2-1) ... Setting up libxcb-dri2-0-dev:amd64 (1.13.1-2) ... Setting up libxcb-render0-dev:amd64 (1.13.1-2) ... Setting up libegl1:amd64 (1.1.0-1) ... Setting up libxcb-dri3-dev:amd64 (1.13.1-2) ... Setting up libxext-dev:amd64 (2:1.3.3-1+b2) ... Setting up python-enum34 (1.1.6-2) ... Setting up libxcb-shape0-dev:amd64 (1.13.1-2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxxf86vm-dev:amd64 (1:1.1.4-1+b2) ... Setting up libxfixes-dev:amd64 (1:5.0.3-1) ... Setting up dh-python (3.20180927) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libcups2:amd64 (2.2.10-3) ... Setting up python-sip (4.19.13+dfsg-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-2) ... Setting up libxcb-randr0-dev:amd64 (1.13.1-2) ... Setting up libxt-dev:amd64 (1:1.1.5-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3) ... Setting up libxcb-xfixes0-dev:amd64 (1.13.1-2) ... Setting up libxdamage-dev:amd64 (1:1.1.4-3) ... Setting up python3-dev (3.7.1-3) ... Setting up libcupsimage2:amd64 (2.2.10-3) ... Setting up python3-all (3.7.1-3) ... Setting up libxcb-present-dev:amd64 (1.13.1-2) ... Setting up libgs9:amd64 (9.26~dfsg-2) ... Setting up libglx-mesa0:amd64 (18.2.8-2) ... Setting up python3-all-dev (3.7.1-3) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2018.20181214-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for dvipdfmx to letter: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for dvips to letter: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for pdftex to letter: /var/lib/texmf/tex/generic/config/pdftexconfig.tex tl-paper: setting paper size for xdvi to letter: /var/lib/texmf/xdvi/XDvi-paper Setting up libglx0:amd64 (1.1.0-1) ... Setting up texlive-latex-base (2018.20181214-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up libglu1-mesa:amd64 (9.0.0-2.1) ... Setting up freeglut3:amd64 (2.8.1-3) ... Setting up python-opengl (3.1.0+dfsg-2) ... Setting up python3-opengl (3.1.0+dfsg-2) ... Setting up libglew2.1:amd64 (2.1.0-3) ... Setting up libglvnd-dev:amd64 (1.1.0-1) ... Setting up libgl1-mesa-dev:amd64 (18.2.8-2) ... Setting up libgl1-mesa-glx:amd64 (18.2.8-2) ... Setting up libqt5gui5:amd64 (5.11.3+dfsg-2) ... Setting up libglu1-mesa-dev:amd64 (9.0.0-2.1) ... Setting up libqt5widgets5:amd64 (5.11.3+dfsg-2) ... Setting up libqt5printsupport5:amd64 (5.11.3+dfsg-2) ... Setting up libqt5help5:amd64 (5.11.3-2) ... Setting up libqt5opengl5:amd64 (5.11.3+dfsg-2) ... Setting up libqt5designer5:amd64 (5.11.3-2) ... Setting up libglew-dev:amd64 (2.1.0-3) ... Setting up freeglut3-dev:amd64 (2.8.1-3) ... Setting up python3-pyqt5 (5.11.3+dfsg-1+b3) ... Setting up python-pyqt5 (5.11.3+dfsg-1+b3) ... Setting up python3-pyqt5.qtopengl (5.11.3+dfsg-1+b3) ... Setting up python-pyqt5.qtopengl (5.11.3+dfsg-1+b3) ... Setting up debhelper (12) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up sbuild-build-depends-pymol-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-4) ... Processing triggers for tex-common (6.10) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-11 dpkg-dev_1.19.2 g++-8_8.2.0-14 gcc-8_8.2.0-14 libc6-dev_2.28-4 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 linux-libc-dev_4.19.13-1 Package versions: adduser_3.118 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-11 binutils-common_2.31.1-11 binutils-x86-64-linux-gnu_2.31.1-11 bsdmainutils_11.1.2+b1 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 clang-8_1:8~svn350193-1~exp1 coreutils_8.30-1 cpp_4:8.2.0-2 cpp-8_8.2.0-14 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12 debian-archive-keyring_2018.1 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 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libbz2-1.0_1.0.6-9 libc-bin_2.28-4 libc-dev-bin_2.28-4 libc6_2.28-4 libc6-dev_2.28-4 libc6-i386_2.28-4 libcairo2_1.16.0-2 libcap-ng0_0.7.9-1+b1 libcc1-0_8.2.0-14 libclang-common-8-dev_1:8~svn350193-1~exp1 libclang1-8_1:8~svn350193-1~exp1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libcups2_2.2.10-3 libcupsimage2_2.2.10-3 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.246 libdouble-conversion1_3.1.0-2 libdpkg-perl_1.19.2 libdrm-amdgpu1_2.4.95-1 libdrm-common_2.4.95-1 libdrm-dev_2.4.95-1 libdrm-intel1_2.4.95-1 libdrm-nouveau2_2.4.95-1 libdrm-radeon1_2.4.95-1 libdrm2_2.4.95-1 libedit2_3.1-20181209-1 libegl-mesa0_18.2.8-2 libegl1_1.1.0-1 libelf1_0.175-2 libevdev2_1.6.0+dfsg-1 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3 libfreetype6-dev_2.9.1-3 libgbm1_18.2.8-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.2.0-14 libgcc1_1:8.2.0-14 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libgfortran5_8.2.0-14 libgl1_1.1.0-1 libgl1-mesa-dev_18.2.8-2 libgl1-mesa-dri_18.2.8-2 libgl1-mesa-glx_18.2.8-2 libglapi-mesa_18.2.8-2 libgles1_1.1.0-1 libgles2_1.1.0-1 libglew-dev_2.1.0-3 libglew2.1_2.1.0-3 libglib2.0-0_2.58.2-3 libglm-dev_0.9.9~a2-2 libglu1-mesa_9.0.0-2.1 libglu1-mesa-dev_9.0.0-2.1 libglvnd-core-dev_1.1.0-1 libglvnd-dev_1.1.0-1 libglvnd0_1.1.0-1 libglx-mesa0_18.2.8-2 libglx0_1.1.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2 libgomp1_8.2.0-14 libgpg-error0_1.33-3 libgraphite2-3_1.3.12-1 libgs9_9.26~dfsg-2 libgs9-common_9.26~dfsg-2 libgssapi-krb5-2_1.16.2-1 libgudev-1.0-0_232-2 libharfbuzz-icu0_2.3.0-1 libharfbuzz0b_2.3.0-1 libhogweed4_3.4.1~rc1-1 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu-dev_63.1-5 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libijs-0.35_0.35-13 libinput-bin_1.12.4-1 libinput10_1.12.4-1 libisl19_0.20-2 libitm1_8.2.0-14 libjbig0_2.1-3.1+b2 libjbig2dec0_0.15-2 libjpeg62-turbo_1:1.5.2-2+b1 libk5crypto3_1.16.2-1 libkeyutils1_1.5.9-9.3 libkpathsea6_2018.20181218.49446-1 libkrb5-3_1.16.2-1 libkrb5support0_1.16.2-1 liblapack3_3.8.0-2 liblcms2-2_2.9-3 libllvm7_1:7.0.1-4 libllvm8_1:8~svn350193-1~exp1 liblsan0_8.2.0-14 liblz4-1_1.8.3-1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2~rc1-1 libmpx2_8.2.0-14 libmtdev1_1.1.5-1+b1 libncurses6_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libobjc-8-dev_8.2.0-14 libobjc4_8.2.0-14 libomp-8-dev_1:8~svn350193-1~exp1 libomp5-8_1:8~svn350193-1~exp1 libopengl0_1.1.0-1 libopenjp2-7_2.3.0-1.1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-4 libpam-modules-bin_1.1.8-4 libpam-runtime_1.1.8-4 libpam0g_1.1.8-4 libpaper-utils_1.1.26 libpaper1_1.1.26 libpciaccess0_0.14-1 libpcre2-16-0_10.32-3 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.36.0-1 libpng-dev_1.6.36-2 libpng16-16_1.6.36-2 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libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-14 libstdc++6_8.2.0-14 libsynctex2_2018.20181218.49446-1 libsystemd0_240-2 libtasn1-6_4.13-3 libteckit0_2.5.8+ds2-5 libtexlua52_2018.20181218.49446-1 libtexlua53_2018.20181218.49446-1 libtexluajit2_2018.20181218.49446-1 libtiff5_4.0.10-3 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libtsan0_8.2.0-14 libubsan1_8.2.0-14 libuchardet0_0.0.6-3 libudev1_240-2 libunistring2_0.9.10-1 libuuid1_2.33-0.2 libwacom-common_0.31-1 libwacom2_0.31-1 libwayland-client0_1.16.0-1 libwayland-server0_1.16.0-1 libwebp6_0.6.1-2 libwoff1_1.0.2-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1+b2 libxcb-keysyms1_0.4.0-1+b2 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render-util0_0.3.9-1+b1 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-util0_0.3.8-3+b2 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxkbcommon-x11-0_0.8.2-1 libxkbcommon0_0.8.2-1 libxml2_2.9.4+dfsg1-7+b3 libxml2-dev_2.9.4+dfsg1-7+b3 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxt-dev_1:1.1.5-1 libxt6_1:1.1.5-1 libxxf86vm-dev_1:1.1.4-1+b2 libxxf86vm1_1:1.1.4-1+b2 libxxhash0_0.6.5-2 libzstd1_1.3.8+dfsg-3 libzzip-0-13_0.13.62-3.1 linux-libc-dev_4.19.13-1 login_1:4.5-1.1 lsb-base_10.2018112800 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17+b3 mesa-common-dev_18.2.8-2 mime-support_3.61 mount_2.33-0.2 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 po-debconf_1.0.21 poppler-data_0.4.9-2 python_2.7.15-3 python-dev_2.7.15-3 python-enum34_1.1.6-2 python-minimal_2.7.15-3 python-numpy_1:1.16.0~rc2-1 python-opengl_3.1.0+dfsg-2 python-pkg-resources_40.6.2-1 python-pyqt5_5.11.3+dfsg-1+b3 python-pyqt5.qtopengl_5.11.3+dfsg-1+b3 python-sip_4.19.13+dfsg-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-3 python3-all_3.7.1-3 python3-all-dev_3.7.1-3 python3-dev_3.7.1-3 python3-distutils_3.7.2-2 python3-lib2to3_3.7.2-2 python3-minimal_3.7.1-3 python3-numpy_1:1.16.0~rc2-1 python3-opengl_3.1.0+dfsg-2 python3-pkg-resources_40.6.2-1 python3-pyqt5_5.11.3+dfsg-1+b3 python3-pyqt5.qtopengl_5.11.3+dfsg-1+b3 python3-sip_4.19.13+dfsg-1 python3.7_3.7.2-1 python3.7-dev_3.7.2-1 python3.7-minimal_3.7.2-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-pymol-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-3 t1utils_1.41-3 tar_1.30+dfsg-4 tex-common_6.10 texlive-base_2018.20181214-1 texlive-binaries_2018.20181218.49446-1 texlive-latex-base_2018.20181214-1 tzdata_2018i-1 ucf_3.0038+nmu1 util-linux_2.33-0.2 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xdg-utils_1.1.3-1 xkb-data_2.23.1-1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 2 01:44:11 2019 UTC gpgv: using RSA key 90E2D2C1AD146A1B7EBB891DBBC17EBB1396F2F7 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pymol_2.2.0+dfsg-4.dsc dpkg-source: info: extracting pymol in /<>/pymol-2.2.0+dfsg dpkg-source: info: unpacking pymol_2.2.0+dfsg.orig.tar.gz dpkg-source: info: unpacking pymol_2.2.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 02_test-suite.patch dpkg-source: info: applying 03_povray.patch dpkg-source: info: applying 22_fix_pymol_import.patch dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch dpkg-source: info: applying 28_no_data_install_in_python_path.patch dpkg-source: info: applying 31_fix_format-security.patch dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch dpkg-source: info: applying 40_mstop_movies.patch dpkg-source: info: applying 50_py3-class-tests.patch dpkg-source: info: applying 60_py3-cmp.patch dpkg-source: info: applying 70_glext-fix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-cf56e09c-e273-460b-8f03-790175da6064 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package pymol dpkg-buildpackage: info: source version 2.2.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stuart Prescott dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/<>/pymol-2.2.0+dfsg/.pybuild/cpython3_3.7_pymol/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/<>/pymol-2.2.0+dfsg' rm -f -r build test/tmp test/cmp generated dh_clean debian/pymol.launch debian/pymol-ref-card.* \ Rules.make create_shadertext.pyc make[1]: Leaving directory '/<>/pymol-2.2.0+dfsg' debian/rules build-arch dh build-arch --with python2,python3 --buildsystem pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build --pyqt PyQt5 running build running build_py creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf copying modules/chempy/mmtf/io.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/mmtf creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/keyword.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/amber.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/state.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker copying modules/chempy/tinker/realtime.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/tinker creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/demo creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/remote_pdb_load.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup copying modules/pmg_tk/startup/apbs_tools.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/startup creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu copying modules/pymol/opengl/glu/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glu creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol copying modules/pymol/embed/epymol/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/epymol creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/syntax creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast copying modules/chempy/fast/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fast creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments copying modules/chempy/fragments/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/fragments copying modules/pmg_tk/skins/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pymol/embed/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt copying modules/pymol/Qt/utils.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/Qt creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib copying modules/pymol/contrib/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/contrib creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut copying modules/pymol/opengl/glut/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/glut creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/stereochemistry creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pymol2/cmd2.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol2 copying modules/pmg_tk/PMGApp.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/Setting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/SetEditor.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/Demo.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/ColorEditor.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/volume.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk copying modules/pmg_tk/TextEditor.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_tk/skins/normal creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/formal_charges.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/amber99.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ copying modules/chempy/champ/assign.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/champ creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol copying modules/pymol/embed/wxpymol/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/embed/wxpymol copying modules/pmg_qt/builder.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_tk.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/file_dialogs.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/volume.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/TextEditor.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/keymapping.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/properties_dialog.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/repository.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/installation.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins copying modules/pymol/plugins/managergui.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/plugins creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/opengl/gl/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl/gl copying modules/pymol/xwin.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/keywords.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/diagnosing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorramping.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/xray.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/fitting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/lazyio.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/exporting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/controlling.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/gui.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/constants_palette.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/povray.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/locking.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/monitoring.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/morphing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/menu.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/feedingback.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/computing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/movie.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/creating.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/colorprinting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/m4x.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/importing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/rpc.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/pymolhttpd.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parsing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/shortcut.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/__main__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/editor.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cmd.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/editing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/preset.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/externing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/parser.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/helping.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/invocation.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/checking.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/keyboard.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/constants.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/vfont.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/setting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/viewing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/completing.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/cgo.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selector.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/moving.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/headering.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/api.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/experimenting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/_gui.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/commanding.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/selecting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/util.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/callback.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/wizarding.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/querying.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol copying modules/pymol/internal.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/state.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/realtime.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/util.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bmin/commands.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy/bmin copying modules/chempy/bonds.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_residues.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/water_amber.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pdb.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mae.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/sdf.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/charge.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mass.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_amber99.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_mmff.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/neighbor.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_mmff.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/xyz.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/place.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/dictdb.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/map.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/bond_amber.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/models.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/arc.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/brick.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cex.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/gms.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mol2.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/pkl.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mmd.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cpv.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/water_residues.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/gamess1.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cif.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/hetatm.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/io.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/lst.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/mol.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/cc1.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/protein_amber.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy copying modules/chempy/solvate.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/chempy creating /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/fedora.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/measurement.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/label.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/toggle.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/charge.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/distance.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/box.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/dragging.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/security.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/message.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/appearance.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/command.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/renaming.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/filter.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/demo.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/annotation.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/density.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/sculpting.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/cleanup.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/wizard/benchmark.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/wizard copying modules/pymol/opengl/__init__.py -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/opengl copying modules/pmg_qt/forms/render.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_map.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/build creating build/temp.linux-amd64-2.7/build/generated creating build/temp.linux-amd64-2.7/contrib creating build/temp.linux-amd64-2.7/contrib/uiuc creating build/temp.linux-amd64-2.7/contrib/uiuc/plugins creating build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin creating build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.linux-amd64-2.7/layer0 creating build/temp.linux-amd64-2.7/layer1 creating build/temp.linux-amd64-2.7/layer2 creating build/temp.linux-amd64-2.7/layer3 creating build/temp.linux-amd64-2.7/layer4 creating build/temp.linux-amd64-2.7/layer5 creating build/temp.linux-amd64-2.7/modules creating build/temp.linux-amd64-2.7/modules/cealign creating build/temp.linux-amd64-2.7/modules/cealign/src creating build/temp.linux-amd64-2.7/ov creating build/temp.linux-amd64-2.7/ov/src x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c build/generated/ShaderText.cpp -o build/temp.linux-amd64-2.7/build/generated/ShaderText.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clangclang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] : warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clangclang: : warningwarning: : argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument]argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(data->file, "%*s %f %f %f", &x, &y, &z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(skip, 1, 8, fp); ^~~~~ ~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clangclang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] : warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(fbuffer, 1024, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(intHeader, sizeof(int), 5, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(floatHeader, sizeof(float), 6, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(fileHeader, sizeof(short), 19, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (&len, sizeof(int), 1, fp); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (str, len, 1, fp); ^~~~~ ~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 1, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 1, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 2, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 2, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 4, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 4, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 4, 1, fp); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread (ptr, 8, 1, fp); ^~~~~ ~~~~~~~~~~~~~ 6 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ 10 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 9 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(magicchar,sizeof(char),4,fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&igarb,sizeof(int),1,fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, "%3s", keyWord); ^~~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f %f %f %f %f %f", keyWord, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &prod); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &plus); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, " %s %f", keyWord, &sigma); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(brick, sizeof(char), 512, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ 21 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(symData, 81, fd); ^~~~~ ~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(title, 82, fd); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 82, fd); ^~~~~ ~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:324:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1023, cube->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:335:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1023, cube->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:342:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(cube->fd, "%d", &orb); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(cube->fd, "%d", &cube->nsets); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:347:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1023, cube->fd); // gobble up rest of line ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1023, cube->fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1023, cube->fd); // skip second header line ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(datablock, total * sizeof(float), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 7 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 9 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&headersize, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 8 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Deferred.cpp -o build/temp.linux-amd64-2.7/layer0/Deferred.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Err.cpp -o build/temp.linux-amd64-2.7/layer0/Err.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 11 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, poscar); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Feedback.cpp -o build/temp.linux-amd64-2.7/layer0/Feedback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 10 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(lineptr, LINESIZE, data->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Field.cpp -o build/temp.linux-amd64-2.7/layer0/Field.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from layer0/Field.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Field.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 13, edm->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~ clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 2 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(nextline, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, bgf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:1 warning generated. 7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mdf->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); ^~~~~ ~~~~~~~~~~~~~~~~~ 9 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_name ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read the molecule info ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read and ignore the mol_type ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, fd); // Read the charge_type ^~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, LINESIZE, mol2->file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~ 9 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 11 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd); // go on to next line ^~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:17: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5444:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] : warning: fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:15: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 1024, fd);warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] ^~~~~ ~~~~~~~~~~~~~~~~~ fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(readbuf, 256, xsf->fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(data->file, "%d", &natm); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(data->file, " Ene= %f\n", &orbenergy); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(data->file, " Spin= %s\n", spin); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(data->file, " Occup= %f\n", &occu); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/File.cpp -o build/temp.linux-amd64-2.7/layer0/File.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GenericBuffer.cpp -o build/temp.linux-amd64-2.7/layer0/GenericBuffer.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 9 warnings generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Block.cpp -o build/temp.linux-amd64-2.7/layer0/Block.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Block.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Block.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 5 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:15: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:6: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); //one more read to keep us in sync ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:22: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:18: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:10: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:10: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:6: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:4: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(line, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~ 10 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&filen, sizeof(namdbin_int32), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line3, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(triangle, 3 * sizeof(int), ntriangles, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(properties, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(striangle, sizeof(short), 3 * ntriangles, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(properties, sizeof(float), 3 * nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(line, 1, 80, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(vertex, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(access, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(normal, 3 * sizeof(float), nvert, infile); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] TRASH; ^~~~~ contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:15: note: expanded from macro 'TRASH' #define TRASH fread(trash, 4, 1, infile) ^~~~~ ~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", buf); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:7: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " %d", &cur); ^~~~~~ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:5: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(sdum, sizeof(sdum), file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(sdum, 512, file); ^~~~~ ~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", sdum); // "%FLAG" ^~~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE" ^~~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, "%s\n", sdum); // "FORMAT (20a4)" ^~~~~~ ~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(prm->title, sizeof(prm->title), file); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file,parm7, ^~~~~~ ~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, parm7, ^~~~~~ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file,"%8d",&prm->Numextra); //BB ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:9: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, 85, file); ^~~~~ ~~~~~~~~~~~~~ 34 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 18 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24: contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Charges[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:4: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Masses[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Rk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Req[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Tk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Teq[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pk[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Pn[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Phase[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Solty[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn1[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->Cn2[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB12[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &prm->HB6[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:11: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT, &H[i]); ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT, ^~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Crystal.cpp -o build/temp.linux-amd64-2.7/layer0/Crystal.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/GraphicsUtil.cpp -o build/temp.linux-amd64-2.7/layer0/GraphicsUtil.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:3: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fread(&dataBegin, sizeof(int), 1, fd); ^~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Crystal.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Crystal.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30: contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:2: warning: ignoring return value of function declared with 'warn_unused_result' attribute [-Wunused-result] fgets(buf, n, mf->f); ^~~~~ ~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Isosurf.cpp -o build/temp.linux-amd64-2.7/layer0/Isosurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 17 warnings generated. clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Isosurf.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Isosurf.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Parse.cpp -o build/temp.linux-amd64-2.7/layer0/Parse.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Pixmap.cpp -o build/temp.linux-amd64-2.7/layer0/Pixmap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 1 warning generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Queue.cpp -o build/temp.linux-amd64-2.7/layer0/Queue.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Debug.cpp -o build/temp.linux-amd64-2.7/layer0/Debug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/os_gl.cpp -o build/temp.linux-amd64-2.7/layer0/os_gl.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.cpp -o build/temp.linux-amd64-2.7/layer1/FontGLUTHel12.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderMgr.cpp -o build/temp.linux-amd64-2.7/layer0/ShaderMgr.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Basis.cpp -o build/temp.linux-amd64-2.7/layer1/Basis.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.cpp -o build/temp.linux-amd64-2.7/layer1/FontGLUTHel18.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ButMode.cpp -o build/temp.linux-amd64-2.7/layer1/ButMode.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/ShaderMgr.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/ShaderMgr.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/ButMode.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/ButMode.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontType.cpp -o build/temp.linux-amd64-2.7/layer1/FontType.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/FontType.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/FontType.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/CGO.cpp -o build/temp.linux-amd64-2.7/layer1/CGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. In file included from layer1/CGO.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/CGO.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Movie.cpp -o build/temp.linux-amd64-2.7/layer1/Movie.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Movie.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Movie.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Map.cpp -o build/temp.linux-amd64-2.7/layer0/Map.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Map.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Map.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ layer1/CGO.cpp:10904:43: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses] if (!attrData[idx].repeat_value && (!allAttrIdxUsed & (1 << idx))){ ^ ~ layer1/CGO.cpp:10904:43: note: add parentheses after the '!' to evaluate the bitwise operator first if (!attrData[idx].repeat_value && (!allAttrIdxUsed & (1 << idx))){ ^ ( ) layer1/CGO.cpp:10904:43: note: add parentheses around left hand side expression to silence this warning if (!attrData[idx].repeat_value && (!allAttrIdxUsed & (1 << idx))){ ^ ( ) layer1/CGO.cpp:11284:19: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses] if (!attrBS & (1 << idx)){ ^ ~ layer1/CGO.cpp:11284:19: note: add parentheses after the '!' to evaluate the bitwise operator first if (!attrBS & (1 << idx)){ ^ ( ) layer1/CGO.cpp:11284:19: note: add parentheses around left hand side expression to silence this warning if (!attrBS & (1 << idx)){ ^ ( ) layer1/CGO.cpp:11294:19: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses] if (!attrBS & (1 << idx)){ ^ ~ layer1/CGO.cpp:11294:19: note: add parentheses after the '!' to evaluate the bitwise operator first if (!attrBS & (1 << idx)){ ^ ( ) layer1/CGO.cpp:11294:19: note: add parentheses around left hand side expression to silence this warning if (!attrBS & (1 << idx)){ ^ ( ) 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Match.cpp -o build/temp.linux-amd64-2.7/layer0/Match.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Matrix.cpp -o build/temp.linux-amd64-2.7/layer0/Matrix.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ortho.cpp -o build/temp.linux-amd64-2.7/layer1/Ortho.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Matrix.cpp:16: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Matrix.cpp:16: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/Ortho.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Ortho.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/P.cpp -o build/temp.linux-amd64-2.7/layer1/P.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/ShaderPrg.cpp -o build/temp.linux-amd64-2.7/layer0/ShaderPrg.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/P.cpp:26: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/P.cpp:26: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer0/ShaderPrg.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/ShaderPrg.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryCache.cpp -o build/temp.linux-amd64-2.7/layer0/MemoryCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MemoryDebug.cpp -o build/temp.linux-amd64-2.7/layer0/MemoryDebug.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/MyPNG.cpp -o build/temp.linux-amd64-2.7/layer0/MyPNG.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/MyPNG.cpp:56: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/MyPNG.cpp:56: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRender.cpp -o build/temp.linux-amd64-2.7/layer1/SceneRender.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Sphere.cpp -o build/temp.linux-amd64-2.7/layer0/Sphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PConv.cpp -o build/temp.linux-amd64-2.7/layer1/PConv.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/PConv.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/PConv.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/SceneRender.cpp:7: In file included from layer1/Scene.h:22: In file included from layer1/PyMOLObject.h:26: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/SceneRender.cpp:7: In file included from layer1/Scene.h:22: In file included from layer1/PyMOLObject.h:26: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tetsurf.cpp -o build/temp.linux-amd64-2.7/layer0/Tetsurf.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Tetsurf.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Tetsurf.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ layer1/PConv.cpp:38:9: warning: 'PyString_Check' macro redefined [-Wmacro-redefined] #define PyString_Check(o) (PyBytes_CheckExact(o) || PyUnicode_Check(o)) ^ /usr/include/python2.7/stringobject.h:58:9: note: previous definition is here #define PyString_Check(op) \ ^ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScrollBar.cpp -o build/temp.linux-amd64-2.7/layer1/ScrollBar.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 8 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Pop.cpp -o build/temp.linux-amd64-2.7/layer1/Pop.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/PyMOLObject.cpp -o build/temp.linux-amd64-2.7/layer1/PyMOLObject.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/PyMOLObject.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/PyMOLObject.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/ScrollBar.cpp:23: In file included from layer1/CGO.h:22: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/ScrollBar.cpp:23: In file included from layer1/CGO.h:22: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Seq.cpp -o build/temp.linux-amd64-2.7/layer1/Seq.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Seq.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Seq.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Texture.cpp -o build/temp.linux-amd64-2.7/layer0/Texture.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Texture.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Texture.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Ray.cpp -o build/temp.linux-amd64-2.7/layer1/Ray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Ray.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Ray.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Setting.cpp -o build/temp.linux-amd64-2.7/layer1/Setting.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Setting.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Setting.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Tracker.cpp -o build/temp.linux-amd64-2.7/layer0/Tracker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Triangle.cpp -o build/temp.linux-amd64-2.7/layer0/Triangle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Triangle.cpp:29: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Triangle.cpp:29: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util.cpp -o build/temp.linux-amd64-2.7/layer0/Util.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 10 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/COLLADA.cpp -o build/temp.linux-amd64-2.7/layer1/COLLADA.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Util2.cpp -o build/temp.linux-amd64-2.7/layer0/Util2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Vector.cpp -o build/temp.linux-amd64-2.7/layer0/Vector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/COLLADA.cpp:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/COLLADA.cpp:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Rep.cpp -o build/temp.linux-amd64-2.7/layer1/Rep.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Rep.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Rep.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Character.cpp -o build/temp.linux-amd64-2.7/layer1/Character.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer0/Word.cpp -o build/temp.linux-amd64-2.7/layer0/Word.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer0/Word.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer0/Word.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Scene.cpp -o build/temp.linux-amd64-2.7/layer1/Scene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Character.cpp:29: In file included from layer1/CGO.h:22: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Character.cpp:29: In file included from layer1/CGO.h:22: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/Scene.cpp:19: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Scene.cpp:19: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Color.cpp -o build/temp.linux-amd64-2.7/layer1/Color.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Color.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Color.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifFile.cpp -o build/temp.linux-amd64-2.7/layer2/CifFile.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Shaker.cpp -o build/temp.linux-amd64-2.7/layer1/Shaker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Shaker.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Shaker.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CifMoleculeReader.cpp -o build/temp.linux-amd64-2.7/layer2/CifMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Control.cpp -o build/temp.linux-amd64-2.7/layer1/Control.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Symmetry.cpp -o build/temp.linux-amd64-2.7/layer1/Symmetry.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Control.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Control.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/Symmetry.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Symmetry.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/CifMoleculeReader.cpp:20: In file included from layer2/AssemblyHelpers.h:11: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/CifMoleculeReader.cpp:20: In file included from layer2/AssemblyHelpers.h:11: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/ScenePicking.cpp -o build/temp.linux-amd64-2.7/layer1/ScenePicking.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Text.cpp -o build/temp.linux-amd64-2.7/layer1/Text.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/Text.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Text.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Extrude.cpp -o build/temp.linux-amd64-2.7/layer1/Extrude.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/ScenePicking.cpp:4: In file included from layer1/Scene.h:22: In file included from layer1/PyMOLObject.h:26: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/ScenePicking.cpp:4: In file included from layer1/Scene.h:22: In file included from layer1/PyMOLObject.h:26: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/Extrude.cpp:22: In file included from layer1/Extrude.h:21: In file included from layer1/CGO.h:22: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Extrude.cpp:22: In file included from layer1/Extrude.h:21: In file included from layer1/CGO.h:22: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/SceneRay.cpp -o build/temp.linux-amd64-2.7/layer1/SceneRay.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Font.cpp -o build/temp.linux-amd64-2.7/layer1/Font.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT.cpp -o build/temp.linux-amd64-2.7/layer1/FontGLUT.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/SceneRay.cpp:2: In file included from layer1/Scene.h:22: In file included from layer1/PyMOLObject.h:26: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/FontGLUT.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/SceneRay.cpp:2: In file included from layer1/Scene.h:22: In file included from layer1/PyMOLObject.h:26: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer1/FontGLUT.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadget.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectGadget.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectGadget.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectGadget.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.cpp -o build/temp.linux-amd64-2.7/layer1/FontGLUT8x13.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.cpp -o build/temp.linux-amd64-2.7/layer1/FontGLUT9x15.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.cpp -o build/temp.linux-amd64-2.7/layer1/FontGLUTHel10.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistDash.cpp -o build/temp.linux-amd64-2.7/layer2/RepDistDash.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/CoordSet.cpp -o build/temp.linux-amd64-2.7/layer2/CoordSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepDistDash.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepDistDash.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/CoordSet.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/CoordSet.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectGadgetRamp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectGadgetRamp.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectGadgetRamp.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDistLabel.cpp -o build/temp.linux-amd64-2.7/layer2/RepDistLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepDistLabel.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepDistLabel.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/DistSet.cpp -o build/temp.linux-amd64-2.7/layer2/DistSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/DistSet.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/DistSet.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectGroup.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectGroup.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectGroup.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectGroup.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDot.cpp -o build/temp.linux-amd64-2.7/layer2/RepDot.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepDot.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepDot.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMap.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectMap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/GadgetSet.cpp -o build/temp.linux-amd64-2.7/layer2/GadgetSet.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectMap.cpp:21: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectMap.cpp:21: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/GadgetSet.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/GadgetSet.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.cpp -o build/temp.linux-amd64-2.7/layer2/RepEllipsoid.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepEllipsoid.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepEllipsoid.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/HydrogenAdder.cpp -o build/temp.linux-amd64-2.7/layer2/HydrogenAdder.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/HydrogenAdder.cpp:7: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/HydrogenAdder.cpp:7: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepLabel.cpp -o build/temp.linux-amd64-2.7/layer2/RepLabel.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepLabel.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepLabel.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmodTyping.cpp -o build/temp.linux-amd64-2.7/layer2/MmodTyping.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/MmodTyping.cpp:7: In file included from layer2/MmodTyping.h:7: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/MmodTyping.cpp:7: In file included from layer2/MmodTyping.h:7: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MmtfMoleculeReader.cpp -o build/temp.linux-amd64-2.7/layer2/MmtfMoleculeReader.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepMesh.cpp -o build/temp.linux-amd64-2.7/layer2/RepMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/MmtfMoleculeReader.cpp:9: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/MmtfMoleculeReader.cpp:9: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/RepMesh.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepMesh.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/TypeFace.cpp -o build/temp.linux-amd64-2.7/layer1/TypeFace.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/View.cpp -o build/temp.linux-amd64-2.7/layer1/View.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer1/View.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/View.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMesh.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectMesh.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectMesh.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectMesh.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Mol2Typing.cpp -o build/temp.linux-amd64-2.7/layer2/Mol2Typing.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/Mol2Typing.cpp:9: In file included from layer2/Mol2Typing.h:7: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/Mol2Typing.cpp:9: In file included from layer2/Mol2Typing.h:7: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbonded.cpp -o build/temp.linux-amd64-2.7/layer2/RepNonbonded.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer1/Wizard.cpp -o build/temp.linux-amd64-2.7/layer1/Wizard.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepNonbonded.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepNonbonded.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/MolV3000.cpp -o build/temp.linux-amd64-2.7/layer2/MolV3000.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon In file included from layer1/Wizard.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer1/Wizard.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectMolecule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectMolecule.cpp:16: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectMolecule.cpp:16: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/MolV3000.cpp:15: In file included from layer2/MolV3000.h:8: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/MolV3000.cpp:15: In file included from layer2/MolV3000.h:8: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectAlignment.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.cpp -o build/temp.linux-amd64-2.7/layer2/RepNonbondedSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectAlignment.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectAlignment.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/RepNonbondedSphere.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepNonbondedSphere.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AssemblyHelpers.cpp -o build/temp.linux-amd64-2.7/layer2/AssemblyHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] layer2/ObjectMolecule.cpp:9625:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] else ^ In file included from layer2/AssemblyHelpers.cpp:11: In file included from layer2/AssemblyHelpers.h:11: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/AssemblyHelpers.cpp:11: In file included from layer2/AssemblyHelpers.h:11: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepRibbon.cpp -o build/temp.linux-amd64-2.7/layer2/RepRibbon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfo.cpp -o build/temp.linux-amd64-2.7/layer2/AtomInfo.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepRibbon.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepRibbon.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/AtomInfo.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/AtomInfo.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCGO.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectCGO.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectCGO.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectCGO.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphere.cpp -o build/temp.linux-amd64-2.7/layer2/RepSphere.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepSphere.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepSphere.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/AtomInfoHistory.cpp -o build/temp.linux-amd64-2.7/layer2/AtomInfoHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectCallback.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectCallback.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectCallback.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectCallback.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/AtomInfoHistory.cpp:6: In file included from layer2/AtomInfoHistory.h:22: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/AtomInfoHistory.cpp:6: In file included from layer2/AtomInfoHistory.h:22: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereGenerate.cpp -o build/temp.linux-amd64-2.7/layer2/RepSphereGenerate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectDist.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectDist.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 7 warnings generated. clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/BondTypeHistory.cpp -o build/temp.linux-amd64-2.7/layer2/BondTypeHistory.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectDist.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectDist.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/RepSphereGenerate.cpp:16: In file included from layer2/RepSphere.h:21: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepSphereGenerate.cpp:16: In file included from layer2/RepSphere.h:21: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/BondTypeHistory.cpp:6: In file included from layer2/BondTypeHistory.h:20: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/BondTypeHistory.cpp:6: In file included from layer2/BondTypeHistory.h:20: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/Sculpt.cpp -o build/temp.linux-amd64-2.7/layer2/Sculpt.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSphereImmediate.cpp -o build/temp.linux-amd64-2.7/layer2/RepSphereImmediate.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/Sculpt.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/Sculpt.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Cmd.cpp -o build/temp.linux-amd64-2.7/layer4/Cmd.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer4/Cmd.cpp:45: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer4/Cmd.cpp:45: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/RepSphereImmediate.cpp:18: In file included from layer2/RepSphere.h:21: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepSphereImmediate.cpp:18: In file included from layer2/RepSphere.h:21: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 8 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectMolecule2.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectMolecule2.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectMolecule2.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepSurface.cpp -o build/temp.linux-amd64-2.7/layer2/RepSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepSurface.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepSurface.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SculptCache.cpp -o build/temp.linux-amd64-2.7/layer2/SculptCache.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/SculptCache.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/SculptCache.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/SideChainHelper.cpp -o build/temp.linux-amd64-2.7/layer2/SideChainHelper.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/SideChainHelper.cpp:10: In file included from layer2/SideChainHelper.h:9: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/SideChainHelper.cpp:10: In file included from layer2/SideChainHelper.h:9: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/VFont.cpp -o build/temp.linux-amd64-2.7/layer2/VFont.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSlice.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectSlice.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/VFont.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/VFont.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/ObjectSlice.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectSlice.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Export.cpp -o build/temp.linux-amd64-2.7/layer4/Export.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer4/Export.cpp:19: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer4/Export.cpp:19: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/AtomIterators.cpp -o build/temp.linux-amd64-2.7/layer3/AtomIterators.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepWireBond.cpp -o build/temp.linux-amd64-2.7/layer2/RepWireBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/AtomIterators.cpp:9: In file included from layer3/AtomIterators.h:11: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/AtomIterators.cpp:9: In file included from layer3/AtomIterators.h:11: In file included from layer2/ObjectMolecule.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/RepWireBond.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepWireBond.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/Menu.cpp -o build/temp.linux-amd64-2.7/layer4/Menu.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer4/Menu.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer4/Menu.cpp:18: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectSurface.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectSurface.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectSurface.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectSurface.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/CifDataValueFormatter.cpp -o build/temp.linux-amd64-2.7/layer3/CifDataValueFormatter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Editor.cpp -o build/temp.linux-amd64-2.7/layer3/Editor.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/Editor.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/Editor.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer4/PopUp.cpp -o build/temp.linux-amd64-2.7/layer4/PopUp.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer4/PopUp.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer4/PopUp.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVRandom.cpp -o build/temp.linux-amd64-2.7/ov/src/OVRandom.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/ov_utility.cpp -o build/temp.linux-amd64-2.7/ov/src/ov_utility.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/ObjectVolume.cpp -o build/temp.linux-amd64-2.7/layer2/ObjectVolume.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/ObjectVolume.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/ObjectVolume.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/PyMOL.cpp -o build/temp.linux-amd64-2.7/layer5/PyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer5/PyMOL.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer5/PyMOL.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Executive.cpp -o build/temp.linux-amd64-2.7/layer3/Executive.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/Executive.cpp:16: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/Executive.cpp:16: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepAngle.cpp -o build/temp.linux-amd64-2.7/layer2/RepAngle.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/TestPyMOL.cpp -o build/temp.linux-amd64-2.7/layer5/TestPyMOL.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepAngle.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepAngle.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer5/TestPyMOL.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer5/TestPyMOL.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer5/main.cpp -o build/temp.linux-amd64-2.7/layer5/main.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon 7 warnings generated. clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCartoon.cpp -o build/temp.linux-amd64-2.7/layer2/RepCartoon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer5/main.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer5/main.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ In file included from layer2/RepCartoon.cpp:27: In file included from layer2/RepCartoon.h:21: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepCartoon.cpp:27: In file included from layer2/RepCartoon.h:21: In file included from layer2/CoordSet.h:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ layer5/main.cpp:1480:24: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings] char *myArgv[8] = {"pymol"}; ^ 8 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.linux-amd64-2.7/modules/cealign/src/ccealignmodule.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from modules/cealign/src/ccealignmodule.cpp:33: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from modules/cealign/src/ccealignmodule.cpp:33: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MaeExportHelpers.cpp -o build/temp.linux-amd64-2.7/layer3/MaeExportHelpers.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/MaeExportHelpers.cpp:11: In file included from layer3/MaeExportHelpers.h:11: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/MaeExportHelpers.cpp:11: In file included from layer3/MaeExportHelpers.h:11: In file included from layer2/AtomInfo.h:21: In file included from layer1/Setting.h:23: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MoleculeExporter.cpp -o build/temp.linux-amd64-2.7/layer3/MoleculeExporter.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVContext.cpp -o build/temp.linux-amd64-2.7/ov/src/OVContext.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeap.cpp -o build/temp.linux-amd64-2.7/ov/src/OVHeap.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/MoleculeExporter.cpp:15: In file included from layer3/MoleculeExporter.h:7: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/MoleculeExporter.cpp:15: In file included from layer3/MoleculeExporter.h:7: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepCylBond.cpp -o build/temp.linux-amd64-2.7/layer2/RepCylBond.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.cpp -o build/temp.linux-amd64-2.7/ov/src/OVHeapArray.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepCylBond.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepCylBond.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVLexicon.cpp -o build/temp.linux-amd64-2.7/ov/src/OVLexicon.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.cpp -o build/temp.linux-amd64-2.7/ov/src/OVOneToAny.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.cpp -o build/temp.linux-amd64-2.7/ov/src/OVOneToOne.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/MovieScene.cpp -o build/temp.linux-amd64-2.7/layer3/MovieScene.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/MovieScene.cpp:8: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/MovieScene.cpp:8: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer2/RepDihedral.cpp -o build/temp.linux-amd64-2.7/layer2/RepDihedral.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer2/RepDihedral.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer2/RepDihedral.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/PlugIOManager.cpp -o build/temp.linux-amd64-2.7/layer3/PlugIOManager.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/PlugIOManager.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/PlugIOManager.cpp:17: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Seeker.cpp -o build/temp.linux-amd64-2.7/layer3/Seeker.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/Seeker.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/Seeker.cpp:20: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_FREETYPE -DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python2.7 -c layer3/Selector.cpp -o build/temp.linux-amd64-2.7/layer3/Selector.o -Wno-narrowing -Wno-unused-function -Wno-char-subscripts -ffast-math -funroll-loops -O3 -fcommon clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] In file included from layer3/Selector.cpp:19: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:88: /usr/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj /* Object */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register const wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ /usr/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register wchar_t *w, /* wchar_t buffer */ ^~~~~~~~~ In file included from layer3/Selector.cpp:19: In file included from layer0/os_python.h:34: In file included from /usr/include/python2.7/Python.h:97: /usr/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register PyObject *obj, /* string or Unicode object */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register char **s, /* pointer to buffer variable */ ^~~~~~~~~ /usr/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register Py_ssize_t *len /* pointer to length variable or NULL ^~~~~~~~~ 7 warnings generated. x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-AjKZhf/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/build/generated/ShaderText.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-amd64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-amd64-2.7/layer0/Block.o build/temp.linux-amd64-2.7/layer0/Crystal.o build/temp.linux-amd64-2.7/layer0/Debug.o build/temp.linux-amd64-2.7/layer0/Deferred.o build/temp.linux-amd64-2.7/layer0/Err.o build/temp.linux-amd64-2.7/layer0/Feedback.o build/temp.linux-amd64-2.7/layer0/Field.o build/temp.linux-amd64-2.7/layer0/File.o build/temp.linux-amd64-2.7/layer0/GenericBuffer.o build/temp.linux-amd64-2.7/layer0/GraphicsUtil.o build/temp.linux-amd64-2.7/layer0/Isosurf.o build/temp.linux-amd64-2.7/layer0/Map.o build/temp.linux-amd64-2.7/layer0/Match.o build/temp.linux-amd64-2.7/layer0/Matrix.o build/temp.linux-amd64-2.7/layer0/MemoryCache.o build/temp.linux-amd64-2.7/layer0/MemoryDebug.o build/temp.linux-amd64-2.7/layer0/MyPNG.o build/temp.linux-amd64-2.7/layer0/Parse.o build/temp.linux-amd64-2.7/layer0/Pixmap.o build/temp.linux-amd64-2.7/layer0/Queue.o build/temp.linux-amd64-2.7/layer0/ShaderMgr.o build/temp.linux-amd64-2.7/layer0/ShaderPrg.o build/temp.linux-amd64-2.7/layer0/Sphere.o build/temp.linux-amd64-2.7/layer0/Tetsurf.o build/temp.linux-amd64-2.7/layer0/Texture.o build/temp.linux-amd64-2.7/layer0/Tracker.o build/temp.linux-amd64-2.7/layer0/Triangle.o build/temp.linux-amd64-2.7/layer0/Util.o build/temp.linux-amd64-2.7/layer0/Util2.o build/temp.linux-amd64-2.7/layer0/Vector.o build/temp.linux-amd64-2.7/layer0/Word.o build/temp.linux-amd64-2.7/layer0/os_gl.o build/temp.linux-amd64-2.7/layer1/Basis.o build/temp.linux-amd64-2.7/layer1/ButMode.o build/temp.linux-amd64-2.7/layer1/CGO.o build/temp.linux-amd64-2.7/layer1/COLLADA.o build/temp.linux-amd64-2.7/layer1/Character.o build/temp.linux-amd64-2.7/layer1/Color.o build/temp.linux-amd64-2.7/layer1/Control.o build/temp.linux-amd64-2.7/layer1/Extrude.o build/temp.linux-amd64-2.7/layer1/Font.o build/temp.linux-amd64-2.7/layer1/FontGLUT.o build/temp.linux-amd64-2.7/layer1/FontGLUT8x13.o build/temp.linux-amd64-2.7/layer1/FontGLUT9x15.o build/temp.linux-amd64-2.7/layer1/FontGLUTHel10.o build/temp.linux-amd64-2.7/layer1/FontGLUTHel12.o build/temp.linux-amd64-2.7/layer1/FontGLUTHel18.o build/temp.linux-amd64-2.7/layer1/FontType.o build/temp.linux-amd64-2.7/layer1/Movie.o build/temp.linux-amd64-2.7/layer1/Ortho.o build/temp.linux-amd64-2.7/layer1/P.o build/temp.linux-amd64-2.7/layer1/PConv.o build/temp.linux-amd64-2.7/layer1/Pop.o build/temp.linux-amd64-2.7/layer1/PyMOLObject.o build/temp.linux-amd64-2.7/layer1/Ray.o build/temp.linux-amd64-2.7/layer1/Rep.o build/temp.linux-amd64-2.7/layer1/Scene.o build/temp.linux-amd64-2.7/layer1/ScenePicking.o build/temp.linux-amd64-2.7/layer1/SceneRay.o build/temp.linux-amd64-2.7/layer1/SceneRender.o build/temp.linux-amd64-2.7/layer1/ScrollBar.o build/temp.linux-amd64-2.7/layer1/Seq.o build/temp.linux-amd64-2.7/layer1/Setting.o build/temp.linux-amd64-2.7/layer1/Shaker.o build/temp.linux-amd64-2.7/layer1/Symmetry.o build/temp.linux-amd64-2.7/layer1/Text.o build/temp.linux-amd64-2.7/layer1/TypeFace.o build/temp.linux-amd64-2.7/layer1/View.o build/temp.linux-amd64-2.7/layer1/Wizard.o build/temp.linux-amd64-2.7/layer2/AssemblyHelpers.o build/temp.linux-amd64-2.7/layer2/AtomInfo.o build/temp.linux-amd64-2.7/layer2/AtomInfoHistory.o build/temp.linux-amd64-2.7/layer2/BondTypeHistory.o build/temp.linux-amd64-2.7/layer2/CifFile.o build/temp.linux-amd64-2.7/layer2/CifMoleculeReader.o build/temp.linux-amd64-2.7/layer2/CoordSet.o build/temp.linux-amd64-2.7/layer2/DistSet.o build/temp.linux-amd64-2.7/layer2/GadgetSet.o build/temp.linux-amd64-2.7/layer2/HydrogenAdder.o build/temp.linux-amd64-2.7/layer2/MmodTyping.o build/temp.linux-amd64-2.7/layer2/MmtfMoleculeReader.o build/temp.linux-amd64-2.7/layer2/Mol2Typing.o build/temp.linux-amd64-2.7/layer2/MolV3000.o build/temp.linux-amd64-2.7/layer2/ObjectAlignment.o build/temp.linux-amd64-2.7/layer2/ObjectCGO.o build/temp.linux-amd64-2.7/layer2/ObjectCallback.o build/temp.linux-amd64-2.7/layer2/ObjectDist.o build/temp.linux-amd64-2.7/layer2/ObjectGadget.o build/temp.linux-amd64-2.7/layer2/ObjectGadgetRamp.o build/temp.linux-amd64-2.7/layer2/ObjectGroup.o build/temp.linux-amd64-2.7/layer2/ObjectMap.o build/temp.linux-amd64-2.7/layer2/ObjectMesh.o build/temp.linux-amd64-2.7/layer2/ObjectMolecule.o build/temp.linux-amd64-2.7/layer2/ObjectMolecule2.o build/temp.linux-amd64-2.7/layer2/ObjectSlice.o build/temp.linux-amd64-2.7/layer2/ObjectSurface.o build/temp.linux-amd64-2.7/layer2/ObjectVolume.o build/temp.linux-amd64-2.7/layer2/RepAngle.o build/temp.linux-amd64-2.7/layer2/RepCartoon.o build/temp.linux-amd64-2.7/layer2/RepCylBond.o build/temp.linux-amd64-2.7/layer2/RepDihedral.o build/temp.linux-amd64-2.7/layer2/RepDistDash.o build/temp.linux-amd64-2.7/layer2/RepDistLabel.o build/temp.linux-amd64-2.7/layer2/RepDot.o build/temp.linux-amd64-2.7/layer2/RepEllipsoid.o build/temp.linux-amd64-2.7/layer2/RepLabel.o build/temp.linux-amd64-2.7/layer2/RepMesh.o build/temp.linux-amd64-2.7/layer2/RepNonbonded.o build/temp.linux-amd64-2.7/layer2/RepNonbondedSphere.o build/temp.linux-amd64-2.7/layer2/RepRibbon.o build/temp.linux-amd64-2.7/layer2/RepSphere.o build/temp.linux-amd64-2.7/layer2/RepSphereGenerate.o build/temp.linux-amd64-2.7/layer2/RepSphereImmediate.o build/temp.linux-amd64-2.7/layer2/RepSurface.o build/temp.linux-amd64-2.7/layer2/RepWireBond.o build/temp.linux-amd64-2.7/layer2/Sculpt.o build/temp.linux-amd64-2.7/layer2/SculptCache.o build/temp.linux-amd64-2.7/layer2/SideChainHelper.o build/temp.linux-amd64-2.7/layer2/VFont.o build/temp.linux-amd64-2.7/layer3/AtomIterators.o build/temp.linux-amd64-2.7/layer3/CifDataValueFormatter.o build/temp.linux-amd64-2.7/layer3/Editor.o build/temp.linux-amd64-2.7/layer3/Executive.o build/temp.linux-amd64-2.7/layer3/MaeExportHelpers.o build/temp.linux-amd64-2.7/layer3/MoleculeExporter.o build/temp.linux-amd64-2.7/layer3/MovieScene.o build/temp.linux-amd64-2.7/layer3/PlugIOManager.o build/temp.linux-amd64-2.7/layer3/Seeker.o build/temp.linux-amd64-2.7/layer3/Selector.o build/temp.linux-amd64-2.7/layer4/Cmd.o build/temp.linux-amd64-2.7/layer4/Export.o build/temp.linux-amd64-2.7/layer4/Menu.o build/temp.linux-amd64-2.7/layer4/PopUp.o build/temp.linux-amd64-2.7/layer5/PyMOL.o build/temp.linux-amd64-2.7/layer5/TestPyMOL.o build/temp.linux-amd64-2.7/layer5/main.o build/temp.linux-amd64-2.7/modules/cealign/src/ccealignmodule.o build/temp.linux-amd64-2.7/ov/src/OVContext.o build/temp.linux-amd64-2.7/ov/src/OVHeap.o build/temp.linux-amd64-2.7/ov/src/OVHeapArray.o build/temp.linux-amd64-2.7/ov/src/OVLexicon.o build/temp.linux-amd64-2.7/ov/src/OVOneToAny.o build/temp.linux-amd64-2.7/ov/src/OVOneToOne.o build/temp.linux-amd64-2.7/ov/src/OVRandom.o build/temp.linux-amd64-2.7/ov/src/ov_utility.o -lxml2 -lpng -lfreetype -lGLEW -lGL -lglut -o /<>/pymol-2.2.0+dfsg/.pybuild/cpython2_2.7_pymol/build/pymol/_cmd.so clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-link.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] building 'chempy.champ._champ' extension creating build/temp.linux-amd64-2.7/contrib/champ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ.c -o build/temp.linux-amd64-2.7/contrib/champ/champ.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.linux-amd64-2.7/contrib/champ/champ_module.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/chiral.c -o build/temp.linux-amd64-2.7/contrib/champ/chiral.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/err2.c -o build/temp.linux-amd64-2.7/contrib/champ/err2.o clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clangclang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] : warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.linux-amd64-2.7/contrib/champ/feedback2.o x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/list.c -o build/temp.linux-amd64-2.7/contrib/champ/list.o clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] contrib/champ/champ.c:2787:3: error: unterminated function-like macro invocation PRINTFD(FB_smiles_parsing) ^ contrib/champ/feedback2.h:122:61: note: expanded from macro 'PRINTFD' #define PRINTFD(sysmod) {if(feedback_(sysmod,FB_debugging)) fprintf(stderr, ^ /usr/include/x86_64-linux-gnu/bits/stdio2.h:112:11: note: macro 'fprintf' defined here # define fprintf(stream, ...) \ ^ contrib/champ/champ.c:5213:2: error: expected expression } ^ contrib/champ/champ.c:5213:2: error: expected '}' contrib/champ/champ.c:2787:3: note: to match this '{' PRINTFD(FB_smiles_parsing) ^ contrib/champ/feedback2.h:122:25: note: expanded from macro 'PRINTFD' #define PRINTFD(sysmod) {if(feedback_(sysmod,FB_debugging)) fprintf(stderr, ^ contrib/champ/champ.c:5213:2: error: expected '}' } ^ contrib/champ/champ.c:2776:1: note: to match this '{' { ^ 4 errors generated. x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<>/pymol-2.2.0+dfsg=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icontrib/champ -I/usr/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.linux-amd64-2.7/contrib/champ/os_memory.o error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 clang: warning: argument unused during compilation: '-specs=/usr/share/dpkg/no-pie-compile.specs' [-Wunused-command-line-argument] E: pybuild pybuild:338: build: plugin distutils failed with: exit code=1: /usr/bin/python setup.py build --pyqt PyQt5 dh_auto_build: pybuild --build -i python{version} -p 2.7 returned exit code 13 make: *** [debian/rules:13: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-01-09T21:19:21Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 149224 Build-Time: 95 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 51 Job: pymol_2.2.0+dfsg-4 Machine Architecture: amd64 Package: pymol Package-Time: 161 Source-Version: 2.2.0+dfsg-4 Space: 149224 Status: attempted Version: 2.2.0+dfsg-4 -------------------------------------------------------------------------------- Finished at 2019-01-09T21:19:21Z Build needed 00:02:41, 149224k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 162.138620232s DC-Time-Estimation: 162.138620232 versus expected 415 (r/m: 1.5595382482359055 ; m: 162.138620232)