DC-Build-Header: apbs 1.4-1 / 2020-02-25 14:00:31 +0000 DC-Task: type:rebuild-binarch-only source:apbs version:1.4-1 chroot:unstable esttime:434 logfile:/tmp/apbs_1.4-1_unstable_clang8.log modes:clang8:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang8 apbs_1.4-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-9-232.eu-central-1.compute.internal +==============================================================================+ | apbs 1.4-1 (amd64) Tue, 25 Feb 2020 14:00:31 +0000 | +==============================================================================+ Package: apbs Version: 1.4-1 Source Version: 1.4-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-314a6aee-265c-4a8a-82aa-30f2955f5ac5' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang8 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=8 + echo 'Install of clang-8' Install of clang-8 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:9 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:14 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB] Fetched 6604 kB in 2s (3697 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-8 libomp-8-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libgcc-8-dev libgcc-9-dev libllvm8 libmpx2 libobjc-8-dev libobjc4 libomp5-8 libstdc++-8-dev libstdc++-9-dev Suggested packages: clang-8-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib libomp-8-doc libstdc++-8-doc libstdc++-9-doc Recommended packages: llvm-8-dev python3 The following NEW packages will be installed: clang-8 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libgcc-8-dev libllvm8 libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-8-dev libomp5-8 libstdc++-8-dev The following packages will be upgraded: cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev 7 upgraded, 20 newly installed, 0 to remove and 2 not upgraded. Need to get 74.9 MB of archives. After this operation, 223 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libllvm8 amd64 1:8.0.1-7 [13.8 MB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B] Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-8-dev amd64 1:8.0.1-7 [2989 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libclang1-8 amd64 1:8.0.1-7 [6244 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 clang-8 amd64 1:8.0.1-7 [8010 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libomp5-8 amd64 1:8.0.1-7 [331 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp-8-dev amd64 1:8.0.1-7 [62.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.9 MB in 1s (101 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12119 files and directories currently installed.) Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ... Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ... Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../04-libgcc-9-dev_9.2.1-30_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../05-cpp-9_9.2.1-30_amd64.deb ... Unpacking cpp-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../06-gcc-9-base_9.2.1-30_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-30) over (9.2.1-29) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../07-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../08-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libllvm8:amd64. Preparing to unpack .../09-libllvm8_1%3a8.0.1-7_amd64.deb ... Unpacking libllvm8:amd64 (1:8.0.1-7) ... Selecting previously unselected package gcc-8-base:amd64. 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W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-8 g++-4.6 + ln -s clang-8 gcc-4.6 + ln -s clang-8 cpp-4.6 + ln -s clang-8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-8 g++-4.7 + ln -s clang-8 gcc-4.7 + ln -s clang-8 cpp-4.7 + ln -s clang-8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-8 g++-4.8 + ln -s clang-8 gcc-4.8 + ln -s clang-8 cpp-4.8 + ln -s clang-8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-8 g++-4.9 + ln -s clang-8 gcc-4.9 + ln -s clang-8 cpp-4.9 + ln -s clang-8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-8 g++-5 + ln -s clang-8 gcc-5 + ln -s clang-8 cpp-5 + ln -s clang-8 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-8 g++-6 + ln -s clang-8 gcc-6 + ln -s clang-8 cpp-6 + ln -s clang-8 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-8 g++-7 + ln -s clang-8 gcc-7 + ln -s clang-8 cpp-7 + ln -s clang-8 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-8 g++-8 + ln -s clang-8 gcc-8 + ln -s clang-8 cpp-8 + ln -s clang-8 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-8 g++-9 + ln -s clang-8 gcc-9 + ln -s clang-8 cpp-9 + ln -s clang-8 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-8 g++-10 + ln -s clang-8 gcc-10 + ln -s clang-8 cpp-10 + ln -s clang-8 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/apbs-Ck14Gq + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang8'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/apbs-Ck14Gq/resolver-yXzREZ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgmp10 zlib1g 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 343 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 343 kB in 0s (6258 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'apbs' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debichem/unstable/apbs/ Need to get 29.7 MB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main apbs 1.4-1 (dsc) [1339 B] Get:2 http://127.0.0.1:12990/debian sid/main apbs 1.4-1 (tar) [29.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main apbs 1.4-1 (diff) [9348 B] Fetched 29.7 MB in 0s (71.6 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/apbs-Ck14Gq/apbs-1.4' with '<>' I: NOTICE: Log filtering will replace 'build/apbs-Ck14Gq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: cmake, debhelper (>> 7.0.50~), libmaloc-dev, libpython-dev, mpi-default-dev (>= 0.3), python-minimal (>> 2.6.6-3~), python-setuptools, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: cmake, debhelper (>> 7.0.50~), libmaloc-dev, libpython-dev, mpi-default-dev (>= 0.3), python-minimal (>> 2.6.6-3~), python-setuptools, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [438 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1914 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libarchive13 libbrotli1 libcbor0 libcroco3 libcurl4 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmagic-mgc libmagic1 libmaloc-dev libmaloc1 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-dev libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librdmacm1 libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf procps python-minimal python-pkg-resources python-setuptools python2 python2-minimal python2.7 python2.7-minimal readline-common sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff lrzip krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-setuptools-doc python2-doc python-tk python2.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev publicsuffix libsasl2-modules xauth libmail-sendmail-perl psmisc python The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl libarchive13 libbrotli1 libcbor0 libcroco3 libcurl4 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmagic-mgc libmagic1 libmaloc-dev libmaloc1 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 libpython-dev libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librdmacm1 libreadline8 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsqlite3-0 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf procps python-minimal python-pkg-resources python-setuptools python2 python2-minimal python2.7 python2.7-minimal readline-common sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 85.4 MB of archives. After this operation, 264 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libpython2.7-minimal amd64 2.7.17-1+b1 [395 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 python2.7-minimal amd64 2.7.17-1+b1 [1342 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 python2-minimal amd64 2.7.17-2 [41.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 mime-support all 3.64 [37.8 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 readline-common all 8.0-3 [72.5 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libsqlite3-0 amd64 3.31.1-3 [661 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libpython2.7-stdlib amd64 2.7.17-1+b1 [1886 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 python2.7 amd64 2.7.17-1+b1 [309 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libpython2-stdlib amd64 2.7.17-2 [20.9 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 python2 amd64 2.7.17-2 [41.7 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libprocps8 amd64 2:3.3.16-1+b1 [62.8 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 procps amd64 2:3.3.16-1+b1 [263 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libfido2-1 amd64 1.3.1-1 [47.4 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 openssh-client amd64 1:8.2p1-3 [906 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 python-minimal amd64 2.7.17-2 [21.1 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 libldap-common all 2.4.49+dfsg-1 [91.9 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-1 [226 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libcurl4 amd64 7.68.0-1 [321 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 libuv1 amd64 1.34.2-1 [127 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libgfortran5 amd64 10-20200222-1 [721 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 libgfortran-9-dev amd64 9.2.1-30 [676 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 gfortran-9 amd64 9.2.1-30 [10.4 MB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 libibverbs1 amd64 28.0-1 [54.5 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 ibverbs-providers amd64 28.0-1 [234 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 libevent-2.1-7 amd64 2.1.11-stable-1 [186 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.11-stable-1 [137 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libevent-extra-2.1-7 amd64 2.1.11-stable-1 [108 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.11-stable-1 [55.1 kB] Get:87 http://127.0.0.1:12990/debian sid/main amd64 libevent-openssl-2.1-7 amd64 2.1.11-stable-1 [62.0 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 libevent-dev amd64 2.1.11-stable-1 [309 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 libexpat1-dev amd64 2.2.9-1 [136 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6+b1 [169 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 libpsm2-2 amd64 11.2.86-1 [177 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 librdmacm1 amd64 28.0-1 [67.1 kB] Get:94 http://127.0.0.1:12990/debian sid/main amd64 libfabric1 amd64 1.6.2-3+b1 [397 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 libltdl7 amd64 2.4.6-13 [390 kB] Get:96 http://127.0.0.1:12990/debian sid/main amd64 libhwloc15 amd64 2.1.0+dfsg-3 [139 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 libltdl-dev amd64 2.4.6-13 [162 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-dev amd64 2.1.0+dfsg-3 [210 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:101 http://127.0.0.1:12990/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:103 http://127.0.0.1:12990/debian sid/main amd64 libxcb1 amd64 1.13.1-5 [137 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 libx11-data all 2:1.6.8-1 [298 kB] Get:105 http://127.0.0.1:12990/debian sid/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:107 http://127.0.0.1:12990/debian sid/main amd64 libxnvctrl0 amd64 440.59-1 [26.2 kB] Get:108 http://127.0.0.1:12990/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-3 [37.7 kB] Get:109 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-plugins amd64 2.1.0+dfsg-3 [19.9 kB] Get:110 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get:111 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get:112 http://127.0.0.1:12990/debian sid/main amd64 libibverbs-dev amd64 28.0-1 [444 kB] Get:113 http://127.0.0.1:12990/debian sid/main amd64 libmaloc1 amd64 0.2-3.1+b1 [50.3 kB] Get:114 http://127.0.0.1:12990/debian sid/main amd64 libmaloc-dev amd64 0.2-3.1+b1 [144 kB] Get:115 http://127.0.0.1:12990/debian sid/main amd64 libpmix2 amd64 3.1.4-1+b1 [431 kB] Get:116 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi3 amd64 4.0.2-5 [1993 kB] Get:117 http://127.0.0.1:12990/debian sid/main amd64 openmpi-common all 4.0.2-5 [169 kB] Get:118 http://127.0.0.1:12990/debian sid/main amd64 openmpi-bin amd64 4.0.2-5 [186 kB] Get:119 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi-dev amd64 4.0.2-5 [915 kB] Get:120 http://127.0.0.1:12990/debian sid/main amd64 libpython2.7 amd64 2.7.17-1+b1 [1035 kB] Get:121 http://127.0.0.1:12990/debian sid/main amd64 libpython2.7-dev amd64 2.7.17-1+b1 [27.1 MB] Get:122 http://127.0.0.1:12990/debian sid/main amd64 libpython2-dev amd64 2.7.17-2 [21.0 kB] Get:123 http://127.0.0.1:12990/debian sid/main amd64 libpython-dev amd64 2.7.17-2 [21.0 kB] Get:124 http://127.0.0.1:12990/debian sid/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get:125 http://127.0.0.1:12990/debian sid/main amd64 python-pkg-resources all 44.0.0-1 [184 kB] Get:126 http://127.0.0.1:12990/debian sid/main amd64 python-setuptools all 44.0.0-1 [385 kB] Get:127 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.4 MB in 1s (92.4 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../05-libpython2.7-minimal_2.7.17-1+b1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.17-1+b1) ... 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Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libxcb1:amd64 (1.13.1-5) ... Setting up mime-support (3.64) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libdebhelper-perl (12.9) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up libsqlite3-0:amd64 (3.31.1-3) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.34.2-1) ... Setting up python-minimal (2.7.17-2) ... Setting up libexpat1-dev:amd64 (2.2.9-1) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libevent-2.1-7:amd64 (2.1.11-stable-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libltdl7:amd64 (2.4.6-13) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libgfortran5:amd64 (10-20200222-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-3) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.86-1) ... Setting up openmpi-common (4.0.2-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.3.1-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-3) ... Setting up libxml2:amd64 (2.9.10+dfsg-3) ... Setting up libmaloc-dev (0.2-3.1+b1) ... Setting up libprocps8:amd64 (2:3.3.16-1+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libtool (2.4.6-13) ... Setting up libarchive13:amd64 (3.4.0-1+b1) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgfortran-9-dev:amd64 (9.2.1-30) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libnuma-dev:amd64 (2.0.12-1+b1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libxnvctrl0:amd64 (440.59-1) ... Setting up libpython2.7-stdlib:amd64 (2.7.17-1+b1) ... Setting up libevent-dev (2.1.11-stable-1) ... Setting up libhwloc15:amd64 (2.1.0+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-1+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcurl4:amd64 (7.68.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (28.0-1) ... Setting up libpython2.7:amd64 (2.7.17-1+b1) ... Setting up libpython2.7-dev:amd64 (2.7.17-1+b1) ... Setting up gettext (0.19.8.1-10) ... Setting up python2.7 (2.7.17-1+b1) ... Setting up gfortran-9 (9.2.1-30) ... Setting up ibverbs-providers:amd64 (28.0-1) ... Setting up libpython2-stdlib:amd64 (2.7.17-2) ... Setting up openssh-client (1:8.2p1-3) ... Setting up libhwloc-plugins:amd64 (2.1.0+dfsg-3) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.17-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up libltdl-dev:amd64 (2.4.6-13) ... Setting up cmake (3.16.3-1) ... Setting up libpython2-dev:amd64 (2.7.17-2) ... Setting up libhwloc-dev:amd64 (2.1.0+dfsg-3) ... Setting up librdmacm1:amd64 (28.0-1) ... Setting up libpmix2:amd64 (3.1.4-1+b1) ... Setting up python-pkg-resources (44.0.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:amd64 (28.0-1) ... Setting up libpython-dev:amd64 (2.7.17-2) ... Setting up python-setuptools (44.0.0-1) ... Setting up libfabric1 (1.6.2-3+b1) ... Setting up libopenmpi3:amd64 (4.0.2-5) ... Setting up openmpi-bin (4.0.2-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.0.2-5) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-8_1:8.0.1-7 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-9_9.2.1-30 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 ibverbs-providers_28.0-1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcap-ng0_0.7.9-2.1+b1 libcbor0_0.5.0+dfsg-2 libcc1-0_10-20200222-1 libclang-common-8-dev_1:8.0.1-7 libclang1-8_1:8.0.1-7 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfabric1_1.6.2-3+b1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfido2-1_1.3.1-1 libfile-stripnondeterminism-perl_1.6.3-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-30 libgfortran5_10-20200222-1 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.1.0+dfsg-3 libhwloc-plugins_2.1.0+dfsg-3 libhwloc15_2.1.0+dfsg-3 libibverbs-dev_28.0-1 libibverbs1_28.0-1 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libitm1_10-20200222-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-1 libldap-common_2.4.49+dfsg-1 libllvm8_1:8.0.1-7 liblsan0_10-20200222-1 libltdl-dev_2.4.6-13 libltdl7_2.4.6-13 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 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| Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 3.0 (quilt) Source: apbs Binary: apbs Architecture: any Version: 1.4-1 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: http://apbs.sourceforge.net Standards-Version: 3.9.4 Vcs-Browser: http://anonscm.debian.org/viewvc/debichem/unstable/apbs/ Vcs-Svn: svn://anonscm.debian.org/debichem/unstable/apbs/ Build-Depends: cmake, debhelper (>> 7.0.50~), libmaloc-dev, libpython-dev, mpi-default-dev (>= 0.3), python-minimal (>> 2.6.6-3~), python-setuptools, zlib1g-dev Package-List: apbs deb science optional Checksums-Sha1: 4f10e300ab5c98607d65de5a82e4b66ced8b78bb 29711532 apbs_1.4.orig.tar.gz 93f8d5bae9f4a05d7510fe31a12a80f67c923395 9348 apbs_1.4-1.debian.tar.gz Checksums-Sha256: 00312320a042e283f106583a3f8b9093abbd193fe5e22ca5c615ab722ca586bd 29711532 apbs_1.4.orig.tar.gz 4634d3bcc8f50b9bd9d885a50c7cb20de3379560881f4889a7a80f626c33f3b9 9348 apbs_1.4-1.debian.tar.gz Files: e0281bd44ffecb651e40687cdaa26361 29711532 apbs_1.4.orig.tar.gz b9bb574b4e0a470a55a8a107dafb03e0 9348 apbs_1.4-1.debian.tar.gz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.14 (GNU/Linux) iEYEARECAAYFAlID0VMACgkQm0bx+wiPa4xaUgCfQeR4OOXRuqkZvH1rFeWL43EV XlwAoLSnXWcLkkCOf6SxlQPK5X7Wg/ow =RIqu -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 8 17:11:47 2013 UTC gpgv: using DSA key 9B46F1FB088F6B8C gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./apbs_1.4-1.dsc dpkg-source: info: extracting apbs in /<> dpkg-source: info: unpacking apbs_1.4.orig.tar.gz dpkg-source: info: unpacking apbs_1.4-1.debian.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_testfiles.patch dpkg-source: info: applying debian_make.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-314a6aee-265c-4a8a-82aa-30f2955f5ac5 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package apbs dpkg-buildpackage: info: source version 1.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Debichem Team dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel dh: warning: Compatibility levels before 9 are deprecated (level 7 in use) dh_auto_clean -O--parallel dh_auto_clean: warning: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules override_dh_clean make[1]: Entering directory '/<>' (cd /<>/build && /bin/bash cleanup.sh) rm: missing operand Try 'rm --help' for more information. make[1]: [debian/rules:26: override_dh_clean] Error 123 (ignored) dh_clean dh_clean: warning: Compatibility levels before 9 are deprecated (level 7 in use) make[1]: Leaving directory '/<>' debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --parallel dh: warning: Compatibility levels before 9 are deprecated (level 7 in use) dh_update_autotools_config -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On \ -DBUILD_DOC=Off -DBUILD_TOOLS=Off \ -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_ZLIB=On \ -DENABLE_PYTHON=On -DENABLE_READLINE=Off \ -DFETK_PATH=/usr -DENABLE_FETK=Off dh_auto_configure: warning: Compatibility levels before 9 are deprecated (level 7 in use) cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On -DBUILD_DOC=Off -DBUILD_TOOLS=Off -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_ZLIB=On -DENABLE_PYTHON=On -DENABLE_READLINE=Off -DFETK_PATH=/usr -DENABLE_FETK=Off .. -- The C compiler identification is Clang 8.0.1 -- The CXX compiler identification is Clang 8.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machien epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Checking for math library -- The math library was found: /usr/lib/x86_64-linux-gnu/libm.so -- Checking for the liberty library CMake Warning at CMakeLists.txt:193 (message): Liberty library not found -- The nsl library was found: /usr/lib/x86_64-linux-gnu/libnsl.so CMake Warning at CMakeLists.txt:237 (message): The socket library was not found CMake Warning at CMakeLists.txt:259 (message): The thread library was not found -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Found fetk: /usr -- Looking for include file maloc/maloc.h -- Looking for include file maloc/maloc.h - found -- External maloc headers found -- External maloc library was found: /usr/lib/libmaloc.so -- Checking for zlib -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- The zlib library was found: /usr/lib/x86_64-linux-gnu/libz.so -- Inline functions enabled -- Looking for python components CMake Error at CMakeLists.txt:675 (message): Python wrappers require GNU compilers -- Configuring incomplete, errors occurred! See also "/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log". cd obj-x86_64-linux-gnu && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /<>/obj-x86_64-linux-gnu # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //No help, variable specified on the command line. BUILD_DOC:UNINITIALIZED=Off //No help, variable specified on the command line. BUILD_TOOLS:UNINITIALIZED=Off //Path to a program. 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CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/x86_64-linux-gnu //No help, variable specified on the command line. CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var //Install path prefix, prepended onto install directories. CMAKE_INSTALL_PREFIX:PATH=/usr //No help, variable specified on the command line. CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc //Path to a program. CMAKE_LINKER:FILEPATH=/usr/bin/ld //Path to a program. CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make //Flags used by the linker during the creation of modules during // all build types. CMAKE_MODULE_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed //Flags used by the linker during the creation of modules during // DEBUG builds. CMAKE_MODULE_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during the creation of modules during // MINSIZEREL builds. CMAKE_MODULE_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during the creation of modules during // NONE builds. CMAKE_MODULE_LINKER_FLAGS_NONE:STRING= //Flags used by the linker during the creation of modules during // RELEASE builds. CMAKE_MODULE_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during the creation of modules during // RELWITHDEBINFO builds. CMAKE_MODULE_LINKER_FLAGS_RELWITHDEBINFO:STRING= //Path to a program. CMAKE_NM:FILEPATH=/usr/bin/nm //Path to a program. CMAKE_OBJCOPY:FILEPATH=/usr/bin/objcopy //Path to a program. CMAKE_OBJDUMP:FILEPATH=/usr/bin/objdump //Value Computed by CMake CMAKE_PROJECT_DESCRIPTION:STATIC= //Value Computed by CMake CMAKE_PROJECT_HOMEPAGE_URL:STATIC= //Value Computed by CMake CMAKE_PROJECT_NAME:STATIC=apbs //Path to a program. CMAKE_RANLIB:FILEPATH=/usr/bin/ranlib //Path to a program. CMAKE_READELF:FILEPATH=/usr/bin/readelf //Flags used by the linker during the creation of shared libraries // during all build types. CMAKE_SHARED_LINKER_FLAGS:STRING=-Wl,-z,relro -Wl,--as-needed //Flags used by the linker during the creation of shared libraries // during DEBUG builds. CMAKE_SHARED_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during the creation of shared libraries // during MINSIZEREL builds. CMAKE_SHARED_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during the creation of shared libraries // during NONE builds. CMAKE_SHARED_LINKER_FLAGS_NONE:STRING= //Flags used by the linker during the creation of shared libraries // during RELEASE builds. CMAKE_SHARED_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during the creation of shared libraries // during RELWITHDEBINFO builds. CMAKE_SHARED_LINKER_FLAGS_RELWITHDEBINFO:STRING= //If set, runtime paths are not added when installing shared libraries, // but are added when building. CMAKE_SKIP_INSTALL_RPATH:BOOL=NO //If set, runtime paths are not added when using shared libraries. CMAKE_SKIP_RPATH:BOOL=On //Flags used by the linker during the creation of static libraries // during all build types. CMAKE_STATIC_LINKER_FLAGS:STRING= //Flags used by the linker during the creation of static libraries // during DEBUG builds. CMAKE_STATIC_LINKER_FLAGS_DEBUG:STRING= //Flags used by the linker during the creation of static libraries // during MINSIZEREL builds. CMAKE_STATIC_LINKER_FLAGS_MINSIZEREL:STRING= //Flags used by the linker during the creation of static libraries // during NONE builds. CMAKE_STATIC_LINKER_FLAGS_NONE:STRING= //Flags used by the linker during the creation of static libraries // during RELEASE builds. CMAKE_STATIC_LINKER_FLAGS_RELEASE:STRING= //Flags used by the linker during the creation of static libraries // during RELWITHDEBINFO builds. CMAKE_STATIC_LINKER_FLAGS_RELWITHDEBINFO:STRING= //Path to a program. CMAKE_STRIP:FILEPATH=/usr/bin/strip //If this value is on, makefiles will be generated without the // .SILENT directive, and all commands will be echoed to the console // during the make. This is useful for debugging only. With Visual // Studio IDE projects all commands are done without /nologo. CMAKE_VERBOSE_MAKEFILE:BOOL=ON //The path to contributed modules for apbs CONTRIB_PATH:FILEPATH=/<>/contrib //Enable debugging mode ENABLE_DEBUG:BOOL=OFF //Enable the electric fence library ENABLE_EFENCE:BOOL=OFF //Enable fast mode ENABLE_FAST:BOOL=OFF //Enable the finite element solver ENABLE_FETK:BOOL=Off //Enable inline functions ENABLE_INLINE:BOOL=ON //No help, variable specified on the command line. ENABLE_MPI:UNINITIALIZED=On //No help, variable specified on the command line. ENABLE_OPENMP:UNINITIALIZED=On //Enable the pedantic ansi compilation ENABLE_PEDANTIC:BOOL=OFF //Enable python wrappers ENABLE_PYTHON:BOOL=On //Enable quiet mode ENABLE_QUIET:BOOL=OFF //Enable the readline library ENABLE_READLINE:BOOL=Off //Enable TINKER support ENABLE_TINKER:BOOL=OFF //Enable verbose debugging mode ENABLE_VERBOSE_DEBUG:BOOL=OFF //Enable use of zlib library ENABLE_ZLIB:BOOL=On //Use an external fetk library FETK_PATH:FILEPATH=/usr //The liberty library LIBERTY_LIBRARY:FILEPATH=LIBERTY_LIBRARY-NOTFOUND //The fetk/maloc library MALOC_LIBRARY:FILEPATH=/usr/lib/libmaloc.so //The math library MATH_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libm.so //Set the maximum memory (in MB) to be used for a job MAX_MEMORY:BOOL=OFF //The nsl library NSL_LIBRARY:FILEPATH=/usr/lib/x86_64-linux-gnu/libnsl.so //The socket library SOCKET_LIBRARY:FILEPATH=SOCKET_LIBRARY-NOTFOUND //The thread library THREAD_LIBRARY:FILEPATH=THREAD_LIBRARY-NOTFOUND //Path to a file. ZLIB_INCLUDE_DIR:PATH=/usr/include //Path to a library. ZLIB_LIBRARY_DEBUG:FILEPATH=ZLIB_LIBRARY_DEBUG-NOTFOUND //Path to a library. 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[/usr/bin/../lib/gcc/x86_64-linux-gnu/9] ==> [/usr/lib/gcc/x86_64-linux-gnu/9] collapse library dir [/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu] collapse library dir [/lib/x86_64-linux-gnu] ==> [/lib/x86_64-linux-gnu] collapse library dir [/lib/../lib64] ==> [/lib64] collapse library dir [/usr/lib/x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu] collapse library dir [/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../..] ==> [/usr/lib] collapse library dir [/usr/lib/llvm-8/bin/../lib] ==> [/usr/lib/llvm-8/lib] collapse library dir [/lib] ==> [/lib] collapse library dir [/usr/lib] ==> [/usr/lib] implicit libs: [stdc++;m;gcc_s;gcc;c;gcc_s;gcc] implicit dirs: [/usr/lib/gcc/x86_64-linux-gnu/9;/usr/lib/x86_64-linux-gnu;/lib/x86_64-linux-gnu;/lib64;/usr/lib;/usr/lib/llvm-8/lib;/lib] implicit fwks: [] Determining if the function time exists passed with the following output: Change Dir: /<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_ba673/fast && make[2]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' /usr/bin/make -f CMakeFiles/cmTC_ba673.dir/build.make CMakeFiles/cmTC_ba673.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_ba673.dir/CheckFunctionExists.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=time -o CMakeFiles/cmTC_ba673.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.16/Modules/CheckFunctionExists.c Linking C executable cmTC_ba673 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_ba673.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=time -Wl,-z,relro -Wl,--as-needed -rdynamic CMakeFiles/cmTC_ba673.dir/CheckFunctionExists.c.o -o cmTC_ba673 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Determining if the function rand exists passed with the following output: Change Dir: /<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_237bd/fast && make[2]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' /usr/bin/make -f CMakeFiles/cmTC_237bd.dir/build.make CMakeFiles/cmTC_237bd.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_237bd.dir/CheckFunctionExists.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=rand -o CMakeFiles/cmTC_237bd.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.16/Modules/CheckFunctionExists.c Linking C executable cmTC_237bd /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_237bd.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=rand -Wl,-z,relro -Wl,--as-needed -rdynamic CMakeFiles/cmTC_237bd.dir/CheckFunctionExists.c.o -o cmTC_237bd make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Determining if the function srand exists passed with the following output: Change Dir: /<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_66f75/fast && make[2]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' /usr/bin/make -f CMakeFiles/cmTC_66f75.dir/build.make CMakeFiles/cmTC_66f75.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_66f75.dir/CheckFunctionExists.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=srand -o CMakeFiles/cmTC_66f75.dir/CheckFunctionExists.c.o -c /usr/share/cmake-3.16/Modules/CheckFunctionExists.c Linking C executable cmTC_66f75 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_66f75.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCHECK_FUNCTION_EXISTS=srand -Wl,-z,relro -Wl,--as-needed -rdynamic CMakeFiles/cmTC_66f75.dir/CheckFunctionExists.c.o -o cmTC_66f75 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Determining if files maloc/maloc.h exist passed with the following output: Change Dir: /<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_5f7f3/fast && make[2]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' /usr/bin/make -f CMakeFiles/cmTC_5f7f3.dir/build.make CMakeFiles/cmTC_5f7f3.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_5f7f3.dir/HAVE_MALOC_H.c.o /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/cmTC_5f7f3.dir/HAVE_MALOC_H.c.o -c /<>/obj-x86_64-linux-gnu/CMakeFiles/CheckIncludeFiles/HAVE_MALOC_H.c Linking C executable cmTC_5f7f3 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_5f7f3.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,--as-needed -rdynamic CMakeFiles/cmTC_5f7f3.dir/HAVE_MALOC_H.c.o -o cmTC_5f7f3 make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu/CMakeFiles/CMakeTmp' dh_auto_configure: error: cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=On -DBUILD_DOC=Off -DBUILD_TOOLS=Off -DENABLE_OPENMP=On -DENABLE_MPI=On -DENABLE_ZLIB=On -DENABLE_PYTHON=On -DENABLE_READLINE=Off -DFETK_PATH=/usr -DENABLE_FETK=Off .. returned exit code 1 make[1]: *** [debian/rules:15: override_dh_auto_configure] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:12: binary] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-25T14:01:11Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 74304 Build-Time: 3 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 18 Job: apbs_1.4-1 Machine Architecture: amd64 Package: apbs Package-Time: 40 Source-Version: 1.4-1 Space: 74304 Status: attempted Version: 1.4-1 -------------------------------------------------------------------------------- Finished at 2020-02-25T14:01:11Z Build needed 00:00:40, 74304k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 40.370293104s DC-Time-Estimation: 40.370293104 versus expected 434 (r/m: 9.750479291343023 ; m: 40.370293104)