DC-Build-Header: spoa 3.0.1-1 / 2020-02-25 18:39:42 +0000 DC-Task: type:rebuild-binarch-only source:spoa version:3.0.1-1 chroot:unstable esttime:66 logfile:/tmp/spoa_3.0.1-1_unstable_clang8.log modes:clang8:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang8 spoa_3.0.1-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-0-217.eu-central-1.compute.internal +==============================================================================+ | spoa 3.0.1-1 (amd64) Tue, 25 Feb 2020 18:39:42 +0000 | +==============================================================================+ Package: spoa Version: 3.0.1-1 Source Version: 3.0.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-ad5b06e8-a255-4842-8d03-144f1705411a' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang8 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=8 + echo 'Install of clang-8' Install of clang-8 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:9 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-1413.15.pdiff [16.3 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-1413.15.pdiff [18.4 kB] Get:9 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-1413.15.pdiff [16.3 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-1413.15.pdiff [18.4 kB] Get:16 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB] Fetched 6638 kB in 2s (3830 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-8 libomp-8-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libgcc-8-dev libgcc-9-dev libllvm8 libmpx2 libobjc-8-dev libobjc4 libomp5-8 libstdc++-8-dev libstdc++-9-dev Suggested packages: clang-8-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib libomp-8-doc libstdc++-8-doc libstdc++-9-doc Recommended packages: llvm-8-dev python3 The following NEW packages will be installed: clang-8 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-8-dev libclang1-8 libedit2 libgc1c2 libgcc-8-dev libllvm8 libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-8-dev libomp5-8 libstdc++-8-dev The following packages will be upgraded: cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev 7 upgraded, 20 newly installed, 0 to remove and 3 not upgraded. Need to get 74.9 MB of archives. After this operation, 223 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libllvm8 amd64 1:8.0.1-7 [13.8 MB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B] Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-8-dev amd64 1:8.0.1-7 [2989 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libclang1-8 amd64 1:8.0.1-7 [6244 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 clang-8 amd64 1:8.0.1-7 [8010 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libomp5-8 amd64 1:8.0.1-7 [331 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp-8-dev amd64 1:8.0.1-7 [62.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.9 MB in 1s (105 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12119 files and directories currently installed.) Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ... Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ... Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ... 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W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-8 g++-4.6 + ln -s clang-8 gcc-4.6 + ln -s clang-8 cpp-4.6 + ln -s clang-8 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-8 g++-4.7 + ln -s clang-8 gcc-4.7 + ln -s clang-8 cpp-4.7 + ln -s clang-8 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-8 g++-4.8 + ln -s clang-8 gcc-4.8 + ln -s clang-8 cpp-4.8 + ln -s clang-8 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-8 g++-4.9 + ln -s clang-8 gcc-4.9 + ln -s clang-8 cpp-4.9 + ln -s clang-8 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-8 g++-5 + ln -s clang-8 gcc-5 + ln -s clang-8 cpp-5 + ln -s clang-8 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-8 g++-6 + ln -s clang-8 gcc-6 + ln -s clang-8 cpp-6 + ln -s clang-8 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-8 g++-7 + ln -s clang-8 gcc-7 + ln -s clang-8 cpp-7 + ln -s clang-8 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-8 g++-8 + ln -s clang-8 gcc-8 + ln -s clang-8 cpp-8 + ln -s clang-8 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-8 g++-9 + ln -s clang-8 gcc-9 + ln -s clang-8 cpp-9 + ln -s clang-8 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-8 g++-10 + ln -s clang-8 gcc-10 + ln -s clang-8 cpp-10 + ln -s clang-8 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/spoa-RabZIt + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang8'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/spoa-RabZIt/resolver-XcTec5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash libgmp10 zlib1g 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1722 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 bash amd64 5.0-6 [1379 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1722 kB in 0s (73.3 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-6_amd64.deb ... Unpacking bash (5.0-6) over (5.0-5) ... Setting up bash (5.0-6) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'spoa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/spoa.git Please use: git clone https://salsa.debian.org/med-team/spoa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 49.0 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main spoa 3.0.1-1 (dsc) [2098 B] Get:2 http://127.0.0.1:12990/debian sid/main spoa 3.0.1-1 (tar) [41.1 kB] Get:3 http://127.0.0.1:12990/debian sid/main spoa 3.0.1-1 (diff) [5800 B] Fetched 49.0 kB in 0s (666 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/spoa-RabZIt/spoa-3.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/spoa-RabZIt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, d-shlibs, rename, libbioparser-dev (>= 2.0), libgtest-dev, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), cmake, d-shlibs, rename, libbioparser-dev (>= 2.0), libgtest-dev, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [416 B] Get:5 copy:/<>/apt_archive ./ Packages [496 B] Fetched 1869 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libbioparser-dev libbrotli1 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgtest-dev libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps rename sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libbioparser-dev libbrotli1 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgtest-dev libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps rename sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 31.8 MB of archives. After this operation, 133 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libprocps8 amd64 2:3.3.16-1+b1 [62.8 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 procps amd64 2:3.3.16-1+b1 [263 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 libldap-common all 2.4.49+dfsg-1 [91.9 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-1 [226 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libcurl4 amd64 7.68.0-1 [321 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libuv1 amd64 1.34.2-1 [127 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 d-shlibs all 0.88 [17.4 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 googletest all 1.10.0-2 [626 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libbioparser-dev all 2.0.1-1 [5700 B] Get:65 http://127.0.0.1:12990/debian sid/main amd64 libgtest-dev amd64 1.10.0-2 [1589 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 rename all 1.10-1 [17.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.8 MB in 0s (81.0 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13887 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../05-libncurses6_6.1+20191019-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20191019-1) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../06-libprocps8_2%3a3.3.16-1+b1_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-1+b1) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a3.3.16-1+b1_amd64.deb ... Unpacking procps (2:3.3.16-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../10-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. 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Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libdebhelper-perl (12.9) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1) ... Setting up googletest (1.10.0-2) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.34.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.88) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libbioparser-dev (2.0.1-1) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-3) ... Setting up libprocps8:amd64 (2:3.3.16-1+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libgtest-dev:amd64 (1.10.0-2) ... Setting up libtool (2.4.6-13) ... Setting up libarchive13:amd64 (3.4.0-1+b1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-1+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libcurl4:amd64 (7.68.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up cmake (3.16.3-1) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-8_1:8.0.1-7 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 googletest_1.10.0-2 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3 libbioparser-dev_2.0.1-1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200222-1 libclang-common-8-dev_1:8.0.1-7 libclang1-8_1:8.0.1-7 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libgtest-dev_1.10.0-2 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libitm1_10-20200222-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 libldap-2.4-2_2.4.49+dfsg-1 libldap-common_2.4.49+dfsg-1 libllvm8_1:8.0.1-7 liblsan0_10-20200222-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-29 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libobjc-8-dev_8.3.0-29 libobjc-9-dev_9.2.1-30 libobjc4_10-20200222-1 libomp-8-dev_1:8.0.1-7 libomp5-8_1:8.0.1-7 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-1+b1 libpsl5_0.20.2-2 libquadmath0_10-20200222-1 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.34.2-1 libxml2_2.9.10+dfsg-3 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.16-1+b1 rename_1.10-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: spoa Binary: spoa, libspoa3, libspoa-dev Architecture: amd64 Version: 3.0.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvaser/spoa Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), cmake, d-shlibs, rename, libbioparser-dev (>= 2.0), libgtest-dev, zlib1g-dev Package-List: libspoa-dev deb libdevel optional arch=amd64 libspoa3 deb libs optional arch=amd64 spoa deb science optional arch=amd64 Checksums-Sha1: 5ebad50e84f860dce8d710506753d64e115699f6 41146 spoa_3.0.1.orig.tar.gz 6ed919ba92bf74e6c194634526633995152503b7 5800 spoa_3.0.1-1.debian.tar.xz Checksums-Sha256: a27678ea3e5701b63ba0b0b75c7151910b48ef50ff55a97ebd57bb57f4c0f14a 41146 spoa_3.0.1.orig.tar.gz dc1b90fda662edd50b3a435751f67bd513b66e7860dc16b125e451e09baddc7b 5800 spoa_3.0.1-1.debian.tar.xz Files: 61d4f2ba90719d44b4f34464d1d227da 41146 spoa_3.0.1.orig.tar.gz fc83b876e9562f015edd574e8f7ae4bb 5800 spoa_3.0.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1/ckkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEeSg/+OGvogkMlDGmai5tbgKggHZCvVRZMSpdv 0xXq81UGFn3Q0LptiT7rOz+MfHG6EreNxx7V4cv1yWMFo0MqBWv8hY7VUUjA3cRe xEpA8LmohfJ8I4W0UKlC3sZvVOquz/kzeM804JV6vTH75QOvE6kCqt7kAhxbayXq msIAn09PdotvSOi7u7Co9hWlESzixg+09OnEwPpmjp3kvC052G7muZ6ugRFvx7Tj mGuy3+9y9H2geRa1muRV2k2QS+QF7lMwidRT1CWg4AdSVbkhavu+/LY6EKTo1pqV sLSYzHLHXQoa8oLfYzp1cxTbQjGwj5vDcOSNE+0v/eVW4emT+gS56DYcPWLzLNOI dJ4uKez9vYNGs4PkGStWbc8WnEzhzgekkKOZTsd+5HhbBQw9A6dHgHP/BVBo9TZR psfyvDW4L+lMA7afE6KkC8NHWTmmldK0J2OoKY4xNpqXaGEWN9iP09IxYadWpyGf AfrsLfT0W2v/uumbAllb+qy+5J2tuwHU2nLkbW1o3xJd4z998ff4MLH75UgNqhb7 GrCiYxWjHe/ZLRNOxQmRLD5e8S+2OJOp61r3cPsUCNX8LTWqAUYxU4j4vBqw6Kj2 nfEBWcqVj1MTWAm0aE6Li93gzI821X2WYaMY9zecyoGPHTm2/dOtmg8eWD1weo4k mPQnYwqjlaE= =iRp4 -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Sep 16 11:30:17 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./spoa_3.0.1-1.dsc dpkg-source: info: extracting spoa in /<> dpkg-source: info: unpacking spoa_3.0.1.orig.tar.gz dpkg-source: info: unpacking spoa_3.0.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch dpkg-source: info: applying fix_soversion.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-ad5b06e8-a255-4842-8d03-144f1705411a SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 3.0.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_optimize_for_native=FALSE cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_optimize_for_native=FALSE .. -- The CXX compiler identification is Clang 8.0.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake --color= Scanning dependencies of target spoa Scanning dependencies of target spoa_static make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 6%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o [ 12%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -Dspoa_EXPORTS -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /<>/src/alignment_engine.cpp /usr/bin/c++ -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /<>/src/alignment_engine.cpp [ 18%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o [ 25%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /<>/src/graph.cpp /usr/bin/c++ -Dspoa_EXPORTS -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /<>/src/graph.cpp [ 37%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o [ 37%] Building CXX object CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o /usr/bin/c++ -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o -c /<>/src/simd_alignment_engine.cpp /usr/bin/c++ -Dspoa_EXPORTS -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o -c /<>/src/simd_alignment_engine.cpp /<>/src/simd_alignment_engine.cpp:293:74: warning: unused parameter 'type' [-Wunused-parameter] std::unique_ptr createSimdAlignmentEngine(AlignmentType type, ^ /<>/src/simd_alignment_engine.cpp:294:22: warning: unused parameter 'subtype' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:294:43: warning: unused parameter 'm' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:294:58: warning: unused parameter 'n' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:294:73: warning: unused parameter 'g' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:295:17: warning: unused parameter 'e' [-Wunused-parameter] std::int8_t e, std::int8_t q, std::int8_t c) { ^ /<>/src/simd_alignment_engine.cpp:295:32: warning: unused parameter 'q' [-Wunused-parameter] std::int8_t e, std::int8_t q, std::int8_t c) { ^ /<>/src/simd_alignment_engine.cpp:295:47: warning: unused parameter 'c' [-Wunused-parameter] std::int8_t e, std::int8_t q, std::int8_t c) { /<>/src/simd_alignment_engine.cpp ^ :293:74: warning: unused parameter 'type' [-Wunused-parameter] std::unique_ptr createSimdAlignmentEngine(AlignmentType type, ^ /<>/src/simd_alignment_engine.cpp:294:22: warning: unused parameter 'subtype' [-Wunused-parameter]/<>/src/simd_alignment_engine.cpp AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:294:43: warning: unused parameter 'm' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:294:58: warning: unused parameter 'n' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:294:73::358:50: warning: unused parameter 'max_sequence_size' [-Wunused-parameter] void SimdAlignmentEngine::prealloc(std::uint32_t max_sequence_size, ^ /<>/src/simd_alignment_engine.cpp:359:19 : warning: unused parameter 'alphabet_size' [-Wunused-parameter] std::uint32_t alphabet_size) { ^ warning: /<>/src/simd_alignment_engine.cpp:380:49: warning: unused parameter 'matrix_width' [-Wunused-parameter] void SimdAlignmentEngine::realloc(std::uint32_t matrix_width, unused parameter 'g' [-Wunused-parameter] AlignmentSubtype subtype, std::int8_t m, std::int8_t n, std::int8_t g, ^ /<>/src/simd_alignment_engine.cpp:295:17: warning: ^ /<>/src/simd_alignment_engine.cpp:381:19: warning: unused parameter 'matrix_height' [-Wunused-parameter] std::uint32_t matrix_height, std::uint32_t num_codes) { ^ /<>/src/simd_alignment_engine.cpp:381:48: warning: unused parameter 'num_codes' [-Wunused-parameter]unused parameter 'e' [-Wunused-parameter] std::int8_t e, std::int8_t q, std::int8_t c) { ^ /<>/src/simd_alignment_engine.cpp:295:32: warning: unused parameter 'q' [-Wunused-parameter] std::int8_t e, std::int8_t q, std::int8_t c) { ^ /<>/src/simd_alignment_engine.cpp:295:47: warning: unused parameter 'c' [-Wunused-parameter] std::int8_t e, std::int8_t q, std::int8_t c) { ^ std::uint32_t matrix_height, std::uint32_t num_codes) { ^ /<>/src/simd_alignment_engine.cpp/<>/src/simd_alignment_engine.cpp:358:50: warning: unused parameter 'max_sequence_size' [-Wunused-parameter] void SimdAlignmentEngine::prealloc(std::uint32_t max_sequence_size, ^ /<>/src/simd_alignment_engine.cpp:359:19::460:50: warning: unused parameter 'sequence' [-Wunused-parameter] void SimdAlignmentEngine::initialize(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:461:35: warning: unused parameter 'graph' [-Wunused-parameter] const std::unique_ptr& graph, std::uint32_t normal_matrix_width, ^ /<>/src/simd_alignment_engine.cpp:461:warning56: warning: unused parameter 'normal_matrix_width' [-Wunused-parameter] const std::unique_ptr& graph, std::uint32_t normal_matrix_width, : unused parameter 'alphabet_size' [-Wunused-parameter] std::uint32_t alphabet_size) { ^ ^ /<>/src/simd_alignment_engine.cpp:380:/<>/src/simd_alignment_engine.cpp:462:19: warning: unused parameter 'matrix_width' [-Wunused-parameter] std::uint32_t matrix_width, std::uint32_t matrix_height) noexcept { ^ /<>/src/simd_alignment_engine.cpp:462:47:49: warning: unused parameter 'matrix_width' [-Wunused-parameter] void SimdAlignmentEngine::realloc(std::uint32_t matrix_width, ^ /<>/src/simd_alignment_engine.cpp:381:19 warning: unused parameter 'matrix_height' [-Wunused-parameter] std::uint32_t matrix_width, std::uint32_t matrix_height) noexcept { : warning: unused parameter 'matrix_height' [-Wunused-parameter] std::uint32_t matrix_height, std::uint32_t num_codes) { ^ /<>/src/simd_alignment_engine.cpp:381:48: warning ^ : unused parameter 'num_codes' [-Wunused-parameter] std::uint32_t matrix_height, std::uint32_t num_codes) { ^ /<>/src/simd_alignment_engine.cpp:460:50: warning: unused parameter 'sequence' [-Wunused-parameter] void SimdAlignmentEngine::initialize(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:461:35: warning: unused parameter 'graph' [-Wunused-parameter] const std::unique_ptr& graph, std::uint32_t normal_matrix_width, ^ /<>/src/simd_alignment_engine.cpp:461:56: warning: unused parameter 'normal_matrix_width' [-Wunused-parameter] const std::unique_ptr& graph, std::uint32_t normal_matrix_width, ^ /<>/src/simd_alignment_engine.cpp:462:19: warning: unused parameter 'matrix_width' [-Wunused-parameter] std::uint32_t matrix_width, std::uint32_t matrix_height) noexcept { ^ /<>/src/simd_alignment_engine.cpp:462:47: warning: unused parameter 'matrix_height' [-Wunused-parameter] std::uint32_t matrix_width, std::uint32_t matrix_height) noexcept { ^ /<>/src/simd_alignment_engine.cpp:649:50: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::align(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:691:51: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::linear(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:692:19: warning: unused parameter 'sequence_size' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:692:64: warning: unused parameter 'graph' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:649:50: warning: unused parameter 'sequence' [-Wunused-parameter] /<>/src/simd_alignment_engine.cpp:1038Alignment SimdAlignmentEngine::align(const char* sequence,:51: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::affine(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:1039:19 ^ : warning: unused parameter 'sequence_size' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:691:51: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::linear(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:692:19:/<>/src/simd_alignment_engine.cpp:1039:64: warning: unused parameter 'graph' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ warning: unused parameter 'sequence_size' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:692:64/<>/src/simd_alignment_engine.cpp:1468:51: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::convex(const char* sequence, : warning: unused parameter 'graph' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ ^ /<>/src/simd_alignment_engine.cpp:1469:19: warning: unused parameter 'sequence_size' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept {/<>/src/simd_alignment_engine.cpp ^ /<>/src/simd_alignment_engine.cpp:1469:64: warning: unused parameter 'graph' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ :1038:51: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::affine(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:1039:19: warning: unused parameter 'sequence_size' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:1039:64: warning: unused parameter 'graph' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:1468:51: warning: unused parameter 'sequence' [-Wunused-parameter] Alignment SimdAlignmentEngine::convex(const char* sequence, ^ /<>/src/simd_alignment_engine.cpp:1469:19: warning: unused parameter 'sequence_size' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ /<>/src/simd_alignment_engine.cpp:1469:64: warning: unused parameter 'graph' [-Wunused-parameter] std::uint32_t sequence_size, const std::unique_ptr& graph) noexcept { ^ 28 warnings generated. 28 warnings generated. [ 43%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -Dspoa_EXPORTS -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /<>/src/sisd_alignment_engine.cpp [ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -I/<>/include -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /<>/src/sisd_alignment_engine.cpp [ 56%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 [ 62%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/simd_alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.3 -o lib/libspoa.so.3 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 62%] Built target spoa_static /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.3 lib/libspoa.so.3 lib/libspoa.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 62%] Built target spoa make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa_bin.dir/DependInfo.cmake --color= Scanning dependencies of target spoa_test Scanning dependencies of target spoa_bin make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /<>/test/spoa_test.cpp [ 75%] Building CXX object CMakeFiles/spoa_test.dir/src/sequence.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_test.dir/src/sequence.cpp.o -c /<>/src/sequence.cpp [ 81%] Building CXX object CMakeFiles/spoa_bin.dir/src/sequence.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_bin.dir/src/sequence.cpp.o -c /<>/src/sequence.cpp [ 87%] Building CXX object CMakeFiles/spoa_bin.dir/src/main.cpp.o /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/config -I/<>/src -I/<>/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_bin.dir/src/main.cpp.o -c /<>/src/main.cpp /<>/test/spoa_test.cpp:17:10: warning: 'SpoaAlignmentTest::SetUp' hides overloaded virtual function [-Woverloaded-virtual] void SetUp(const std::string& file_name, spoa::AlignmentType alignment_type, ^ /usr/include/gtest/gtest.h:469:16: note: hidden overloaded virtual function 'testing::Test::SetUp' declared here: different number of parameters (0 vs 8) virtual void SetUp(); ^ [ 93%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_bin.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/spoa_bin.dir/src/sequence.cpp.o CMakeFiles/spoa_bin.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib: lib/libspoa.so.3 -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target spoa_bin 1 warning generated. [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/spoa_test.dir/src/sequence.cpp.o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/<>/obj-x86_64-linux-gnu/lib lib/libspoa.so.3 -lgtest_main -lgtest -lz -lpthread make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target spoa_test make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' `find . -name spoa_test` Running main() from /build/googletest-E6gCXt/googletest-1.10.0/googletest/src/gtest_main.cc [==========] Running 39 tests from 2 test suites. [----------] Global test environment set-up. [----------] 2 tests from SpoaTest [ RUN ] SpoaTest.AlignmentTypeError [ OK ] SpoaTest.AlignmentTypeError (0 ms) [ RUN ] SpoaTest.EmptyInputError [ OK ] SpoaTest.EmptyInputError (0 ms) [----------] 2 tests from SpoaTest (0 ms total) [----------] 37 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.GraphClear [ OK ] SpoaAlignmentTest.GraphClear (234 ms) [ RUN ] SpoaAlignmentTest.LocalConsensus [ OK ] SpoaAlignmentTest.LocalConsensus (119 ms) [ RUN ] SpoaAlignmentTest.LocalAffineConsensus [ OK ] SpoaAlignmentTest.LocalAffineConsensus (278 ms) [ RUN ] SpoaAlignmentTest.LocalConvexConsensus [ OK ] SpoaAlignmentTest.LocalConvexConsensus (385 ms) [ RUN ] SpoaAlignmentTest.LocalConsensusWithQualities [ OK ] SpoaAlignmentTest.LocalConsensusWithQualities (117 ms) [ RUN ] SpoaAlignmentTest.LocalAffineConsensusWithQualities [ OK ] SpoaAlignmentTest.LocalAffineConsensusWithQualities (278 ms) [ RUN ] SpoaAlignmentTest.LocalConvexConsensusWithQualities [ OK ] SpoaAlignmentTest.LocalConvexConsensusWithQualities (382 ms) [ RUN ] SpoaAlignmentTest.GlobalConsensus [ OK ] SpoaAlignmentTest.GlobalConsensus (66 ms) [ RUN ] SpoaAlignmentTest.GlobalAffineConsensus [ OK ] SpoaAlignmentTest.GlobalAffineConsensus (252 ms) [ RUN ] SpoaAlignmentTest.GlobalConvexConsensus [ OK ] SpoaAlignmentTest.GlobalConvexConsensus (328 ms) [ RUN ] SpoaAlignmentTest.GlobalConsensusWithQualities [ OK ] SpoaAlignmentTest.GlobalConsensusWithQualities (66 ms) [ RUN ] SpoaAlignmentTest.GlobalAffineConsensusWithQualities [ OK ] SpoaAlignmentTest.GlobalAffineConsensusWithQualities (252 ms) [ RUN ] SpoaAlignmentTest.GlobalConvexConsensusWithQualities [ OK ] SpoaAlignmentTest.GlobalConvexConsensusWithQualities (328 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConsensus [ OK ] SpoaAlignmentTest.SemiGlobalConsensus (111 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalAffineConsensus [ OK ] SpoaAlignmentTest.SemiGlobalAffineConsensus (305 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConvexConsensus [ OK ] SpoaAlignmentTest.SemiGlobalConvexConsensus (385 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConsensusWithQualities [ OK ] SpoaAlignmentTest.SemiGlobalConsensusWithQualities (110 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalAffineConsensusWithQualities [ OK ] SpoaAlignmentTest.SemiGlobalAffineConsensusWithQualities (305 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConvexConsensusWithQualities [ OK ] SpoaAlignmentTest.SemiGlobalConvexConsensusWithQualities (388 ms) [ RUN ] SpoaAlignmentTest.LocalMSA [ OK ] SpoaAlignmentTest.LocalMSA (118 ms) [ RUN ] SpoaAlignmentTest.LocalAffineMSA [ OK ] SpoaAlignmentTest.LocalAffineMSA (278 ms) [ RUN ] SpoaAlignmentTest.LocalConvexMSA [ OK ] SpoaAlignmentTest.LocalConvexMSA (383 ms) [ RUN ] SpoaAlignmentTest.LocalMSAWithQualities [ OK ] SpoaAlignmentTest.LocalMSAWithQualities (118 ms) [ RUN ] SpoaAlignmentTest.LocalAffineMSAWithQualities [ OK ] SpoaAlignmentTest.LocalAffineMSAWithQualities (280 ms) [ RUN ] SpoaAlignmentTest.LocalConvexMSAWithQualities [ OK ] SpoaAlignmentTest.LocalConvexMSAWithQualities (382 ms) [ RUN ] SpoaAlignmentTest.GlobalMSA [ OK ] SpoaAlignmentTest.GlobalMSA (68 ms) [ RUN ] SpoaAlignmentTest.GlobalAffineMSA [ OK ] SpoaAlignmentTest.GlobalAffineMSA (254 ms) [ RUN ] SpoaAlignmentTest.GlobalConvexMSA [ OK ] SpoaAlignmentTest.GlobalConvexMSA (329 ms) [ RUN ] SpoaAlignmentTest.GlobalMSAWithQualities [ OK ] SpoaAlignmentTest.GlobalMSAWithQualities (68 ms) [ RUN ] SpoaAlignmentTest.GlobalAffineMSAWithQualities [ OK ] SpoaAlignmentTest.GlobalAffineMSAWithQualities (255 ms) [ RUN ] SpoaAlignmentTest.GlobalConvexMSAWithQualities [ OK ] SpoaAlignmentTest.GlobalConvexMSAWithQualities (329 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalMSA [ OK ] SpoaAlignmentTest.SemiGlobalMSA (113 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalAffineMSA [ OK ] SpoaAlignmentTest.SemiGlobalAffineMSA (308 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConvexMSA [ OK ] SpoaAlignmentTest.SemiGlobalConvexMSA (393 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalMSAWithQualities [ OK ] SpoaAlignmentTest.SemiGlobalMSAWithQualities (112 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalAffineMSAWithQualities [ OK ] SpoaAlignmentTest.SemiGlobalAffineMSAWithQualities (310 ms) [ RUN ] SpoaAlignmentTest.SemiGlobalConvexMSAWithQualities [ OK ] SpoaAlignmentTest.SemiGlobalConvexMSAWithQualities (387 ms) [----------] 37 tests from SpoaAlignmentTest (9175 ms total) [----------] Global test environment tear-down [==========] 39 tests from 2 test suites ran. (9175 ms total) [ PASSED ] 39 tests. `find . -name spoa | grep bin` test/data/sample.fastq Consensus (496) AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/spoa.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/spoa_static.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target spoa make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/depend [ 62%] Built target spoa_static make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/spoa_bin.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/spoa_test.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_bin.dir/build.make CMakeFiles/spoa_bin.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/spoa_bin.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 81%] Built target spoa_test [100%] Built target spoa_bin make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.3 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a -- Installing: /<>/debian/tmp/usr/include/spoa -- Installing: /<>/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /<>/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /<>/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/spoa-1.pc -- Installing: /<>/debian/tmp/usr/bin/spoa -- Set runtime path of "/<>/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install file-rename 's/_static\.a/.a/' `find debian -name libspoa_static.a` d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libspoa3/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.a debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.3 debian/libspoa3/usr/lib/x86_64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa3 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libspoa-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libspoa3/DEBIAN/symbols doesn't match completely debian/libspoa3.symbols --- debian/libspoa3.symbols (libspoa3_3.0.1-1_amd64) +++ dpkg-gensymbols_IAK8N 2020-02-25 18:40:23.919219629 +0000 @@ -1,8 +1,10 @@ libspoa.so.3 libspoa3 #MINVER# _ZN4spoa11createGraphEv@Base 1.1.3 _ZN4spoa15AlignmentEngine5alignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt10unique_ptrINS_5GraphESt14default_deleteISA_EE@Base 3.0.0 - _ZN4spoa15AlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 +#MISSING: 3.0.1-1# _ZN4spoa15AlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 _ZN4spoa15AlignmentEngineC2ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0 + _ZN4spoa15AlignmentEngineD0Ev@Base 3.0.1-1 + _ZN4spoa15AlignmentEngineD2Ev@Base 3.0.1-1 _ZN4spoa19SimdAlignmentEngine5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0 _ZN4spoa19SimdAlignmentEngine7reallocEjjj@Base 1.1.3 _ZN4spoa19SimdAlignmentEngine8preallocEjj@Base 1.1.3 @@ -67,36 +69,40 @@ _ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE@Base 1.1.3 _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3 _ZNK4spoa5Graph9print_dotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.5 - 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_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 1.1.3 - _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC1IN4spoa4EdgeESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 1.1.3 - _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC2IN4spoa4EdgeESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 1.1.3 - _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3 + _ZNSt12__shared_ptrIN4spoa4EdgeELN9__gnu_cxx12_Lock_policyE2EEC2IS1_St14default_deleteIS1_EvEEOSt10unique_ptrIT_T0_E@Base 3.0.1-1 +#MISSING: 3.0.1-1# _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC1IN4spoa4EdgeESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC2IN4spoa4EdgeESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv@Base 1.1.3 + _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 3.0.1-1 _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.3 _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv@Base 1.1.3 _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info@Base 1.1.3 _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev@Base 1.1.3 - _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.3 - _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev@Base 1.1.3 _ZNSt5dequeIjSaIjEE16_M_push_back_auxIJRKjEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJRS5_EEEvDpOT_@Base 1.1.3 + _ZNSt5dequeIjSaIjEE17_M_reallocate_mapEmb@Base 3.0.1-1 +#MISSING: 3.0.1-1# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJRS5_EEEvDpOT_@Base 1.1.3 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 _ZNSt6vectorISt10shared_ptrIN4spoa4EdgeEESaIS3_EE17_M_realloc_insertIJRS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.1.3 _ZNSt6vectorISt10unique_ptrIN4spoa4NodeESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3 - _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 3.0.0 - _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 - _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 +#MISSING: 3.0.1-1# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 3.0.0 +#MISSING: 3.0.1-1# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0 +#MISSING: 3.0.1-1# _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0 _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3 _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3 - _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorIjSaIjEE12emplace_backIJRiEEEvDpOT_@Base 1.1.3 - _ZNSt6vectorIjSaIjEE12emplace_backIJRjEEEvDpOT_@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt6vectorIjSaIjEE12emplace_backIJRiEEEvDpOT_@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt6vectorIjSaIjEE12emplace_backIJRjEEEvDpOT_@Base 1.1.3 _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3 - _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1.3 +#MISSING: 3.0.1-1# _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1.3 _ZTIN4spoa15AlignmentEngineE@Base 1.1.3 _ZTIN4spoa19SimdAlignmentEngineE@Base 1.1.3 _ZTIN4spoa19SisdAlignmentEngineE@Base 1.1.3 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:13: binary] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-25T18:40:23Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 22480 Build-Time: 19 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 6 Job: spoa_3.0.1-1 Machine Architecture: amd64 Package: spoa Package-Time: 41 Source-Version: 3.0.1-1 Space: 22480 Status: attempted Version: 3.0.1-1 -------------------------------------------------------------------------------- Finished at 2020-02-25T18:40:23Z Build needed 00:00:41, 22480k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 42.517692444s