DC-Build-Header: anfo 0.98-7 / 2020-02-25 17:57:11 +0000
DC-Task: type:rebuild-binarch-only source:anfo version:0.98-7 chroot:unstable esttime:102 logfile:/tmp/anfo_0.98-7_unstable_clang9.log modes:clang9:binarch-only
DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang9 anfo_0.98-7'
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-12-118.eu-central-1.compute.internal

+==============================================================================+
| anfo 0.98-7 (amd64)                          Tue, 25 Feb 2020 17:57:11 +0000 |
+==============================================================================+

Package: anfo
Version: 0.98-7
Source Version: 0.98-7
Distribution: unstable
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-18cc55b2-a1c4-4857-9eef-50a1fa5ae710' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


/tmp/clang9
-----------

+ echo 'Entering customization script...'
Entering customization script...
+ CLANG_VERSION=9
+ echo 'Install of clang-9'
Install of clang-9
+ apt-get update
Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB]
Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB]
Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB]
Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB]
Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB]
Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB]
Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B]
Get:9 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-1413.15.pdiff [16.3 kB]
Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB]
Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB]
Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB]
Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB]
Get:14 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB]
Get:15 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-1413.15.pdiff [18.4 kB]
Get:9 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-1413.15.pdiff [16.3 kB]
Get:15 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-1413.15.pdiff [18.4 kB]
Get:16 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB]
Fetched 6638 kB in 2s (3942 kB/s)
Reading package lists...
+ apt-get install --yes --no-install-recommends --force-yes clang-9 libomp-9-dev libobjc-9-dev
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
  cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6
  libasan5 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2
  libgc1c2 libgcc-8-dev libgcc-9-dev libllvm9 libmpx2 libobjc-8-dev libobjc4
  libomp5-9 libstdc++-8-dev libstdc++-9-dev libz3-4
Suggested packages:
  clang-9-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib
  libomp-9-doc libstdc++-8-doc libstdc++-9-doc
Recommended packages:
  llvm-9-dev python3
The following NEW packages will be installed:
  clang-9 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386
  libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libllvm9
  libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-9-dev libomp5-9
  libstdc++-8-dev libz3-4
The following packages will be upgraded:
  cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev
7 upgraded, 21 newly installed, 0 to remove and 3 not upgraded.
Need to get 78.9 MB of archives.
After this operation, 237 MB of additional disk space will be used.
Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB]
Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB]
Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB]
Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB]
Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB]
Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB]
Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB]
Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB]
Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB]
Get:10 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB]
Get:11 http://127.0.0.1:12990/debian sid/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB]
Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp9 amd64 1:9.0.1-8 [8429 kB]
Get:13 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB]
Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB]
Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB]
Get:16 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB]
Get:17 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB]
Get:18 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB]
Get:19 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB]
Get:20 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB]
Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB]
Get:22 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B]
Get:23 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB]
Get:24 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-9-dev amd64 1:9.0.1-8 [3727 kB]
Get:25 http://127.0.0.1:12990/debian sid/main amd64 clang-9 amd64 1:9.0.1-8 [1156 kB]
Get:26 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB]
Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp5-9 amd64 1:9.0.1-8 [333 kB]
Get:28 http://127.0.0.1:12990/debian sid/main amd64 libomp-9-dev amd64 1:9.0.1-8 [66.2 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 78.9 MB in 1s (96.4 MB/s)
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(Reading database ... 12119 files and directories currently installed.)
Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ...
Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ...
Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ...
Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ...
Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ...
Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ...
Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ...
Unpacking libstdc++-9-dev:amd64 (9.2.1-30) over (9.2.1-29) ...
Preparing to unpack .../04-libgcc-9-dev_9.2.1-30_amd64.deb ...
Unpacking libgcc-9-dev:amd64 (9.2.1-30) over (9.2.1-29) ...
Preparing to unpack .../05-cpp-9_9.2.1-30_amd64.deb ...
Unpacking cpp-9 (9.2.1-30) over (9.2.1-29) ...
Preparing to unpack .../06-gcc-9-base_9.2.1-30_amd64.deb ...
Unpacking gcc-9-base:amd64 (9.2.1-30) over (9.2.1-29) ...
Selecting previously unselected package libbsd0:amd64.
Preparing to unpack .../07-libbsd0_0.10.0-1_amd64.deb ...
Unpacking libbsd0:amd64 (0.10.0-1) ...
Selecting previously unselected package libedit2:amd64.
Preparing to unpack .../08-libedit2_3.1-20191231-1_amd64.deb ...
Unpacking libedit2:amd64 (3.1-20191231-1) ...
Selecting previously unselected package libz3-4:amd64.
Preparing to unpack .../09-libz3-4_4.8.7-4_amd64.deb ...
Unpacking libz3-4:amd64 (4.8.7-4) ...
Selecting previously unselected package libllvm9:amd64.
Preparing to unpack .../10-libllvm9_1%3a9.0.1-8_amd64.deb ...
Unpacking libllvm9:amd64 (1:9.0.1-8) ...
Selecting previously unselected package libclang-cpp9.
Preparing to unpack .../11-libclang-cpp9_1%3a9.0.1-8_amd64.deb ...
Unpacking libclang-cpp9 (1:9.0.1-8) ...
Selecting previously unselected package gcc-8-base:amd64.
Preparing to unpack .../12-gcc-8-base_8.3.0-29_amd64.deb ...
Unpacking gcc-8-base:amd64 (8.3.0-29) ...
Selecting previously unselected package libmpx2:amd64.
Preparing to unpack .../13-libmpx2_8.3.0-29_amd64.deb ...
Unpacking libmpx2:amd64 (8.3.0-29) ...
Selecting previously unselected package libgcc-8-dev:amd64.
Preparing to unpack .../14-libgcc-8-dev_8.3.0-29_amd64.deb ...
Unpacking libgcc-8-dev:amd64 (8.3.0-29) ...
Selecting previously unselected package libstdc++-8-dev:amd64.
Preparing to unpack .../15-libstdc++-8-dev_8.3.0-29_amd64.deb ...
Unpacking libstdc++-8-dev:amd64 (8.3.0-29) ...
Selecting previously unselected package libgc1c2:amd64.
Preparing to unpack .../16-libgc1c2_1%3a7.6.4-0.4_amd64.deb ...
Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ...
Selecting previously unselected package libobjc4:amd64.
Preparing to unpack .../17-libobjc4_10-20200222-1_amd64.deb ...
Unpacking libobjc4:amd64 (10-20200222-1) ...
Selecting previously unselected package libobjc-8-dev:amd64.
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Unpacking libobjc-8-dev:amd64 (8.3.0-29) ...
Selecting previously unselected package libc6-i386.
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Unpacking libc6-i386 (2.29-10) ...
Selecting previously unselected package lib32gcc-s1.
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Unpacking lib32gcc1 (1:10-20200222-1) ...
Selecting previously unselected package lib32stdc++6.
Preparing to unpack .../22-lib32stdc++6_10-20200222-1_amd64.deb ...
Unpacking lib32stdc++6 (10-20200222-1) ...
Selecting previously unselected package libclang-common-9-dev.
Preparing to unpack .../23-libclang-common-9-dev_1%3a9.0.1-8_amd64.deb ...
Unpacking libclang-common-9-dev (1:9.0.1-8) ...
Selecting previously unselected package clang-9.
Preparing to unpack .../24-clang-9_1%3a9.0.1-8_amd64.deb ...
Unpacking clang-9 (1:9.0.1-8) ...
Selecting previously unselected package libobjc-9-dev:amd64.
Preparing to unpack .../25-libobjc-9-dev_9.2.1-30_amd64.deb ...
Unpacking libobjc-9-dev:amd64 (9.2.1-30) ...
Selecting previously unselected package libomp5-9:amd64.
Preparing to unpack .../26-libomp5-9_1%3a9.0.1-8_amd64.deb ...
Unpacking libomp5-9:amd64 (1:9.0.1-8) ...
Selecting previously unselected package libomp-9-dev.
Preparing to unpack .../27-libomp-9-dev_1%3a9.0.1-8_amd64.deb ...
Unpacking libomp-9-dev (1:9.0.1-8) ...
Setting up libgc1c2:amd64 (1:7.6.4-0.4) ...
Setting up libobjc4:amd64 (10-20200222-1) ...
Setting up libz3-4:amd64 (4.8.7-4) ...
Setting up gcc-8-base:amd64 (8.3.0-29) ...
Setting up libmpx2:amd64 (8.3.0-29) ...
Setting up libc6-i386 (2.29-10) ...
Setting up libbsd0:amd64 (0.10.0-1) ...
Setting up gcc-9-base:amd64 (9.2.1-30) ...
Setting up libomp5-9:amd64 (1:9.0.1-8) ...
Setting up libedit2:amd64 (3.1-20191231-1) ...
Setting up libasan5:amd64 (9.2.1-30) ...
Setting up lib32gcc-s1 (10-20200222-1) ...
Setting up libgcc-8-dev:amd64 (8.3.0-29) ...
Setting up libomp-9-dev (1:9.0.1-8) ...
Setting up cpp-9 (9.2.1-30) ...
Setting up libllvm9:amd64 (1:9.0.1-8) ...
Setting up libstdc++-8-dev:amd64 (8.3.0-29) ...
Setting up libclang-cpp9 (1:9.0.1-8) ...
Setting up lib32gcc1 (1:10-20200222-1) ...
Setting up libgcc-9-dev:amd64 (9.2.1-30) ...
Setting up libobjc-8-dev:amd64 (8.3.0-29) ...
Setting up lib32stdc++6 (10-20200222-1) ...
Setting up libobjc-9-dev:amd64 (9.2.1-30) ...
Setting up libclang-common-9-dev (1:9.0.1-8) ...
Setting up gcc-9 (9.2.1-30) ...
Setting up libstdc++-9-dev:amd64 (9.2.1-30) ...
Setting up clang-9 (1:9.0.1-8) ...
Setting up g++-9 (9.2.1-30) ...
Processing triggers for libc-bin (2.29-10) ...
W: --force-yes is deprecated, use one of the options starting with --allow instead.
+ echo 'Replace gcc, g++ & cpp by clang'
Replace gcc, g++ & cpp by clang
+ VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10'
+ cd /usr/bin
+ for VERSION in $VERSIONS
+ rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc
+ ln -s clang++-9 g++-4.6
+ ln -s clang-9 gcc-4.6
+ ln -s clang-9 cpp-4.6
+ ln -s clang-9 gcc
+ echo 'gcc-4.6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc
+ ln -s clang++-9 g++-4.7
+ ln -s clang-9 gcc-4.7
+ ln -s clang-9 cpp-4.7
+ ln -s clang-9 gcc
+ echo 'gcc-4.7 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.7
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.7 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.7
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc
+ ln -s clang++-9 g++-4.8
+ ln -s clang-9 gcc-4.8
+ ln -s clang-9 cpp-4.8
+ ln -s clang-9 gcc
+ echo 'gcc-4.8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc
+ ln -s clang++-9 g++-4.9
+ ln -s clang-9 gcc-4.9
+ ln -s clang-9 cpp-4.9
+ ln -s clang-9 gcc
+ echo 'gcc-4.9 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-4.9
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-4.9 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-4.9
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-5 gcc-5 cpp-5 gcc
+ ln -s clang++-9 g++-5
+ ln -s clang-9 gcc-5
+ ln -s clang-9 cpp-5
+ ln -s clang-9 gcc
+ echo 'gcc-5 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-5
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-5 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-5
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-6 gcc-6 cpp-6 gcc
+ ln -s clang++-9 g++-6
+ ln -s clang-9 gcc-6
+ ln -s clang-9 cpp-6
+ ln -s clang-9 gcc
+ echo 'gcc-6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-6 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-6
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-7 gcc-7 cpp-7 gcc
+ ln -s clang++-9 g++-7
+ ln -s clang-9 gcc-7
+ ln -s clang-9 cpp-7
+ ln -s clang-9 gcc
+ echo 'gcc-7 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-7
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-7 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-7
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-8 gcc-8 cpp-8 gcc
+ ln -s clang++-9 g++-8
+ ln -s clang-9 gcc-8
+ ln -s clang-9 cpp-8
+ ln -s clang-9 gcc
+ echo 'gcc-8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-8 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-8
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ for VERSION in $VERSIONS
+ rm -f g++-9 gcc-9 cpp-9 gcc
+ ln -s clang++-9 g++-9
+ ln -s clang-9 gcc-9
+ ln -s clang-9 cpp-9
+ ln -s clang-9 gcc
+ echo 'gcc-9 hold'
+ dpkg --set-selections
+ echo 'g++-9 hold'
+ dpkg --set-selections
+ for VERSION in $VERSIONS
+ rm -f g++-10 gcc-10 cpp-10 gcc
+ ln -s clang++-9 g++-10
+ ln -s clang-9 gcc-10
+ ln -s clang-9 cpp-10
+ ln -s clang-9 gcc
+ echo 'gcc-10 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: gcc-10
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ echo 'g++-10 hold'
+ dpkg --set-selections
dpkg: warning: package not in status nor available database at line 1: g++-10
dpkg: warning: found unknown packages; this might mean the available database
is outdated, and needs to be updated through a frontend method;
please see the FAQ <https://wiki.debian.org/Teams/Dpkg/FAQ>
+ cd -
/build/anfo-xtAm8n
+ echo 'Check if gcc, g++ & cpp are actually clang'
Check if gcc, g++ & cpp are actually clang
+ gcc --version
+ grep clang
+ cpp --version
+ grep clang
+ g++ --version
+ grep clang

I: Finished running '/tmp/clang9'.

Finished processing commands.
--------------------------------------------------------------------------------
I: NOTICE: Log filtering will replace 'build/anfo-xtAm8n/resolver-m3Bx5D' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Hit:1 http://127.0.0.1:12990/debian sid InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  bash libgmp10 zlib1g
3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 1722 kB of archives.
After this operation, 4096 B of additional disk space will be used.
Get:1 http://127.0.0.1:12990/debian sid/main amd64 bash amd64 5.0-6 [1379 kB]
Get:2 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB]
Get:3 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 1722 kB in 0s (69.9 MB/s)
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(Reading database ... 13921 files and directories currently installed.)
Preparing to unpack .../archives/bash_5.0-6_amd64.deb ...
Unpacking bash (5.0-6) over (5.0-5) ...
Setting up bash (5.0-6) ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
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(Reading database ... 13921 files and directories currently installed.)
Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ...
Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ...
Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ...
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(Reading database ... 13921 files and directories currently installed.)
Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ...
Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ...
Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ...
Processing triggers for libc-bin (2.29-10) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'anfo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/anfo.git
Please use:
git clone https://salsa.debian.org/med-team/anfo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 472 kB of source archives.
Get:1 http://127.0.0.1:12990/debian sid/main anfo 0.98-7 (dsc) [2139 B]
Get:2 http://127.0.0.1:12990/debian sid/main anfo 0.98-7 (tar) [462 kB]
Get:3 http://127.0.0.1:12990/debian sid/main anfo 0.98-7 (diff) [7556 B]
Fetched 472 kB in 0s (5755 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/anfo-xtAm8n/anfo-0.98' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/anfo-xtAm8n' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77), build-essential, fakeroot
Filtered Build-Depends: debhelper (>= 11~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77), build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [432 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [512 B]
Fetched 1901 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libbz2-dev libcroco3
  libdebhelper-perl libelf-dev libelf1 libelk0 libelk0-dev
  libfile-stripnondeterminism-perl libglib2.0-0 libice-dev libice6 libicu63
  libmagic-mgc libmagic1 libpipeline1 libpopt-dev libpopt0 libprotobuf-dev
  libprotobuf-lite17 libprotobuf17 libprotoc17 libpthread-stubs0-dev
  libsigsegv2 libsm-dev libsm6 libsub-override-perl libtool libuchardet0
  libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxmu-dev
  libxmu-headers libxmu6 libxt-dev libxt6 m4 man-db pkg-config po-debconf
  protobuf-compiler sensible-utils x11-common x11proto-core-dev x11proto-dev
  x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
  libice-doc libsm-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
  libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
  groff-base intltool-debian libarchive-zip-perl libbz2-dev libcroco3
  libdebhelper-perl libelf-dev libelf1 libelk0 libelk0-dev
  libfile-stripnondeterminism-perl libglib2.0-0 libice-dev libice6 libicu63
  libmagic-mgc libmagic1 libpipeline1 libpopt-dev libpopt0 libprotobuf-dev
  libprotobuf-lite17 libprotobuf17 libprotoc17 libpthread-stubs0-dev
  libsigsegv2 libsm-dev libsm6 libsub-override-perl libtool libuchardet0
  libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml2 libxmu-dev
  libxmu-headers libxmu6 libxt-dev libxt6 m4 man-db pkg-config po-debconf
  protobuf-compiler sbuild-build-depends-main-dummy sensible-utils x11-common
  x11proto-core-dev x11proto-dev x11proto-xext-dev xorg-sgml-doctools
  xtrans-dev zlib1g-dev
0 upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.0 MB of archives.
After this operation, 104 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B]
Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB]
Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB]
Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB]
Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB]
Get:7 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:8 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB]
Get:9 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB]
Get:10 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB]
Get:11 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB]
Get:12 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:13 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB]
Get:14 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB]
Get:15 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:16 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB]
Get:17 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB]
Get:18 http://127.0.0.1:12990/debian sid/main amd64 d-shlibs all 0.88 [17.4 kB]
Get:19 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB]
Get:20 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:21 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB]
Get:22 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB]
Get:23 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:24 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:25 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:26 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB]
Get:27 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB]
Get:28 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB]
Get:29 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB]
Get:30 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB]
Get:31 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB]
Get:32 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB]
Get:33 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:34 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB]
Get:35 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB]
Get:36 http://127.0.0.1:12990/debian sid/main amd64 libbz2-dev amd64 1.0.8-2 [30.1 kB]
Get:37 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB]
Get:38 http://127.0.0.1:12990/debian sid/main amd64 libelf-dev amd64 0.176-1.1 [72.1 kB]
Get:39 http://127.0.0.1:12990/debian sid/main amd64 x11-common all 1:7.7+20 [252 kB]
Get:40 http://127.0.0.1:12990/debian sid/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB]
Get:41 http://127.0.0.1:12990/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB]
Get:42 http://127.0.0.1:12990/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB]
Get:43 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get:44 http://127.0.0.1:12990/debian sid/main amd64 libxcb1 amd64 1.13.1-5 [137 kB]
Get:45 http://127.0.0.1:12990/debian sid/main amd64 libx11-data all 2:1.6.8-1 [298 kB]
Get:46 http://127.0.0.1:12990/debian sid/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB]
Get:47 http://127.0.0.1:12990/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB]
Get:48 http://127.0.0.1:12990/debian sid/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB]
Get:49 http://127.0.0.1:12990/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB]
Get:50 http://127.0.0.1:12990/debian sid/main amd64 libelk0 amd64 3.99.8-4.2+b1 [166 kB]
Get:51 http://127.0.0.1:12990/debian sid/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:52 http://127.0.0.1:12990/debian sid/main amd64 x11proto-dev all 2018.4-4 [251 kB]
Get:53 http://127.0.0.1:12990/debian sid/main amd64 x11proto-core-dev all 2018.4-4 [3128 B]
Get:54 http://127.0.0.1:12990/debian sid/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB]
Get:55 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB]
Get:56 http://127.0.0.1:12990/debian sid/main amd64 xtrans-dev all 1.3.5-1 [100 kB]
Get:57 http://127.0.0.1:12990/debian sid/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B]
Get:58 http://127.0.0.1:12990/debian sid/main amd64 libxcb1-dev amd64 1.13.1-5 [174 kB]
Get:59 http://127.0.0.1:12990/debian sid/main amd64 libx11-dev amd64 2:1.6.8-1 [822 kB]
Get:60 http://127.0.0.1:12990/debian sid/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B]
Get:61 http://127.0.0.1:12990/debian sid/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB]
Get:62 http://127.0.0.1:12990/debian sid/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB]
Get:63 http://127.0.0.1:12990/debian sid/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB]
Get:64 http://127.0.0.1:12990/debian sid/main amd64 libxt-dev amd64 1:1.1.5-1+b3 [426 kB]
Get:65 http://127.0.0.1:12990/debian sid/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:66 http://127.0.0.1:12990/debian sid/main amd64 libxmu-dev amd64 2:1.1.2-2+b3 [66.3 kB]
Get:67 http://127.0.0.1:12990/debian sid/main amd64 libelk0-dev amd64 3.99.8-4.2+b1 [193 kB]
Get:68 http://127.0.0.1:12990/debian sid/main amd64 libpopt0 amd64 1.16-14 [49.5 kB]
Get:69 http://127.0.0.1:12990/debian sid/main amd64 libpopt-dev amd64 1.16-14 [57.2 kB]
Get:70 http://127.0.0.1:12990/debian sid/main amd64 libprotobuf17 amd64 3.6.1.3-2+b2 [840 kB]
Get:71 http://127.0.0.1:12990/debian sid/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2+b2 [169 kB]
Get:72 http://127.0.0.1:12990/debian sid/main amd64 libprotobuf-dev amd64 3.6.1.3-2+b2 [1152 kB]
Get:73 http://127.0.0.1:12990/debian sid/main amd64 libprotoc17 amd64 3.6.1.3-2+b2 [686 kB]
Get:74 http://127.0.0.1:12990/debian sid/main amd64 pkg-config amd64 0.29-6 [63.5 kB]
Get:75 http://127.0.0.1:12990/debian sid/main amd64 protobuf-compiler amd64 3.6.1.3-2+b2 [65.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 27.0 MB in 0s (78.5 MB/s)
Selecting previously unselected package bsdmainutils.
(Reading database ... 13921 files and directories currently installed.)
Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ...
Unpacking bsdmainutils (11.1.2+b1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-4_amd64.deb ...
Unpacking groff-base (1.22.4-4) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../03-libpipeline1_1.5.2-2_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.2-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.0-2_amd64.deb ...
Unpacking man-db (2.9.0-2) ...
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Preparing to unpack .../05-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
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Preparing to unpack .../06-libmagic-mgc_1%3a5.38-4_amd64.deb ...
Unpacking libmagic-mgc (1:5.38-4) ...
Selecting previously unselected package libmagic1:amd64.
Preparing to unpack .../07-libmagic1_1%3a5.38-4_amd64.deb ...
Unpacking libmagic1:amd64 (1:5.38-4) ...
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Preparing to unpack .../08-file_1%3a5.38-4_amd64.deb ...
Unpacking file (1:5.38-4) ...
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Preparing to unpack .../09-gettext-base_0.19.8.1-10_amd64.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:amd64.
Preparing to unpack .../10-libsigsegv2_2.12-2_amd64.deb ...
Unpacking libsigsegv2:amd64 (2.12-2) ...
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Preparing to unpack .../11-m4_1.4.18-4_amd64.deb ...
Unpacking m4 (1.4.18-4) ...
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Preparing to unpack .../12-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
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Preparing to unpack .../13-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
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Preparing to unpack .../14-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
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Unpacking autopoint (0.19.8.1-10) ...
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Preparing to unpack .../16-d-shlibs_0.88_all.deb ...
Unpacking d-shlibs (0.88) ...
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Unpacking libtool (2.4.6-13) ...
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Preparing to unpack .../18-dh-autoreconf_19_all.deb ...
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+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64)
Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-9_1:9.0.1-8 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200222-1 libclang-common-9-dev_1:9.0.1-8 libclang-cpp9_1:9.0.1-8 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf-dev_0.176-1.1 libelf1_0.176-1.1 libelk0_3.99.8-4.2+b1 libelk0-dev_3.99.8-4.2+b1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libice-dev_2:1.0.9-2 libice6_2:1.0.9-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libitm1_10-20200222-1 libllvm9_1:9.0.1-8 liblsan0_10-20200222-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-29 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libobjc-8-dev_8.3.0-29 libobjc-9-dev_9.2.1-30 libobjc4_10-20200222-1 libomp-9-dev_1:9.0.1-8 libomp5-9_1:9.0.1-8 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpopt-dev_1.16-14 libpopt0_1.16-14 libprotobuf-dev_3.6.1.3-2+b2 libprotobuf-lite17_3.6.1.3-2+b2 libprotobuf17_3.6.1.3-2+b2 libprotoc17_3.6.1.3-2+b2 libpthread-stubs0-dev_0.4-1 libquadmath0_10-20200222-1 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm-dev_2:1.2.3-1 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libx11-dev_2:1.6.8-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-5 libxcb1-dev_1.13.1-5 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1+b2 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-3 libxmu-dev_2:1.1.2-2+b3 libxmu-headers_2:1.1.2-2 libxmu6_2:1.1.2-2+b3 libxt-dev_1:1.1.5-1+b3 libxt6_1:1.1.5-1+b3 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pkg-config_0.29-6 po-debconf_1.0.21 protobuf-compiler_3.6.1.3-2+b2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 util-linux_2.34-0.1 x11-common_1:7.7+20 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 x11proto-xext-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: anfo
Binary: anfo, libanfo0, libanfo0-dev
Architecture: any
Version: 0.98-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Tim Booth <tbooth@ceh.ac.uk>, Andreas Tille <tille@debian.org>
Homepage: http://bioinf.eva.mpg.de/anfo/
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/anfo
Vcs-Git: https://salsa.debian.org/med-team/anfo.git
Build-Depends: debhelper (>= 11~), libpopt-dev, libprotobuf-dev, libelk0-dev, libelk0, zlib1g-dev, libbz2-dev, pkg-config, protobuf-compiler, d-shlibs (>= 0.77)
Package-List:
 anfo deb science optional arch=any
 libanfo0 deb libs optional arch=any
 libanfo0-dev deb libdevel optional arch=any
Checksums-Sha1:
 df0dc3bd6ac455e86cf66628434ac1587336c14c 462359 anfo_0.98.orig.tar.gz
 35c4e9acc879cb31d8ee358e11d57ffce3e7d5bb 7556 anfo_0.98-7.debian.tar.xz
Checksums-Sha256:
 fdd7bfb6467872f4b9f3a3a19310f73154345689751fd965b1f4418ee0f740e7 462359 anfo_0.98.orig.tar.gz
 177e51c1e49540f1fe2dd4828e0a6ba11377e8e51cf1e8e945b3288c98755bc1 7556 anfo_0.98-7.debian.tar.xz
Files:
 17398d931375f0be94cf5543739733b8 462359 anfo_0.98.orig.tar.gz
 61df42b57db4bc5bfca76c2c61042431 7556 anfo_0.98-7.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Oct 15 14:55:48 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./anfo_0.98-7.dsc
dpkg-source: info: extracting anfo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking anfo_0.98.orig.tar.gz
dpkg-source: info: unpacking anfo_0.98-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 01-silence-narrowing-conversion.patch
dpkg-source: info: applying 02-correct-minscore-self-initialization.patch
dpkg-source: info: applying 03-include-unistd-forF_OK.patch
dpkg-source: info: applying 04-reorder-template-for-new-scope-rules.patch
dpkg-source: info: applying 05-autoreconf.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=user42
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1001
SCHROOT_GROUP=user42
SCHROOT_SESSION_ID=sid-amd64-sbuild-18cc55b2-a1c4-4857-9eef-50a1fa5ae710
SCHROOT_UID=1001
SCHROOT_USER=user42
SHELL=/bin/sh
USER=user42

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package anfo
dpkg-buildpackage: info: source version 0.98-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh  clean
   dh_clean
 debian/rules build
dh  build
   dh_update_autotools_config
   dh_autoreconf
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
aclocal: overwriting 'm4/libtool.m4' with '/usr/share/aclocal/libtool.m4'
aclocal: overwriting 'm4/ltoptions.m4' with '/usr/share/aclocal/ltoptions.m4'
aclocal: overwriting 'm4/ltversion.m4' with '/usr/share/aclocal/ltversion.m4'
aclocal: overwriting 'm4/lt~obsolete.m4' with '/usr/share/aclocal/lt~obsolete.m4'
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
/usr/share/aclocal-1.16/ar-lib.m4:13: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: warning: LT_INIT was called before AM_PROG_AR
aclocal.m4:70: AM_PROG_AR is expanded from...
configure.ac:77: the top level
configure.ac:77: installing './ar-lib'
configure.ac:12: installing './compile'
configure.ac:6: installing './missing'
src/Makefile.am: installing './depcomp'
   dh_auto_configure
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for protoc... /usr/bin/protoc
checking for library containing exp... none required
checking for library containing log1p... none required
checking for poptGetContext in -lpopt... yes
checking for deflate in -lz... yes
checking for BZ2_bzCompress in -lbz2... yes
checking for Elk_Init in -lelk... yes
checking popt.h usability... yes
checking popt.h presence... yes
checking for popt.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for protobuf... yes
checking google/protobuf/message.h usability... yes
checking google/protobuf/message.h presence... yes
checking for google/protobuf/message.h... yes
checking elk/scheme.h usability... yes
checking elk/scheme.h presence... yes
checking for elk/scheme.h... yes
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for working volatile... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for int32_t... yes
checking for int64_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for uint8_t... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for strerror... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating man/Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking the archiver (ar) interface... ar
   dh_auto_build
	make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make  all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
protoc -I. -I/usr/include --cpp_out=. config.proto
protoc -I. -I/usr/include --cpp_out=. output.proto
[libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
[libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: output.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
[libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: config.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.)
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fa2dna.o fa2dna.cc
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.cc
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o anfo_common.lo anfo_common.cc
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o concurrent_stream.lo concurrent_stream.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc  -fPIC -DPIC -o .libs/align.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc  -fPIC -DPIC -o .libs/anfo_common.o
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc  -fPIC -DPIC -o .libs/concurrent_stream.o
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
In file included from ./stream.h:20:
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
In file included from anfo_common.cc:21./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
:
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: In file included from note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^

# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                                             ^
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from ./stream.h:20:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
                                             ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from concurrent_stream.cc:1:
In file included from ./concurrent_stream.h:23:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]

      ^
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'

      ^# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^

/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
In file included from # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))align.cc:21:
In file included from ./align.h:22:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]

                                             ^
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
    } _GLIBCXX_DEPRECATED;
      ^                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here

    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
:
./stream.h                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
:    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
345:8# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.hIn file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
:86:46:                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
     } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
note: expanded from macro '_GLIBCXX_DEPRECATED'# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^

# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
In file included from ./anfo_common.h:22                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
:
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
In file included from ./align.h:# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
22:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
In file included from anfo_common.cc# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
align.cc    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
:21:
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ./align.h:22:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
    } _GLIBCXX_DEPRECATED;
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
      ^    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'

# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'

                                             ^# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^

In file included from In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
anfo_common.cc:21:
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
In file included from     } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
./anfo_common.h:22# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
:
In file included from ./align.h:22:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
concurrent_stream.cc:107:9: warning: exception of type 'char *' will be caught by earlier handler [-Wexceptions]
        catch( char *e ) { perr( e ) ; }
               ^
concurrent_stream.cc:106:15: note: for type 'const char *'
        catch( const char *e ) { perr( e ) ; }
                     ^
concurrent_stream.cc:178:2: warning: 'auto_ptr<output::Result>' is deprecated [-Wdeprecated-declarations]
        auto_ptr< Result > r( outgoing_[ next_out_++ ] ) ;
        ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<output::Result>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
concurrent_stream.cc:212:2: warning: 'auto_ptr<output::Result>' is deprecated [-Wdeprecated-declarations]
        auto_ptr< Result > r( incoming_[ next_in_ ] ) ;
        ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<output::Result>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
In file included from anfo_common.cc# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)):21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]

                                             ^                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here

    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
21:
In file included from ./align.h:                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
22    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
:
./stream.h# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
: note                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
:     } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
./stream.h:795:19:                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
     } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^

                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
    } _GLIBCXX_DEPRECATED;                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here

    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
      ^
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
                           ^    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'

# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
                                             ^

      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:832:8: warning: In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here

    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from align.cc:21:
In file included from ./align.h:22:
./stream.h:846:In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
14: warning:                 BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'

# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from anfo_common.cc:21:
In file included from ./anfo_common.h:22:
In file included from ./align.h:22:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
In file included from align.cc    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
:21:
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ./align.h:22:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
24 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c align.cc -o align.o >/dev/null 2>&1
21 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c concurrent_stream.cc -o concurrent_stream.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ducttape.lo ducttape.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc  -fPIC -DPIC -o .libs/ducttape.o
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
In file included from ./stream.h:20:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
In file included from ./ducttape.h:21:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from ducttape.cc:21:
./ducttape.h:139:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
ducttape.cc:597:57: warning: implicit conversion from 'int' to 'char' changes value from 254 to -2 [-Wconstant-conversion]
                                        buf[1] = h->has_map_quality() ? h->map_quality() : 254 ;
                                               ~                                           ^~~
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o index.lo index.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc  -fPIC -DPIC -o .libs/index.o
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o misc_streams.lo misc_streams.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc  -fPIC -DPIC -o .libs/misc_streams.o
24 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c anfo_common.cc -o anfo_common.o >/dev/null 2>&1
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
In file included from ./stream.h:20:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
26 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c ducttape.cc -o ducttape.o >/dev/null 2>&1
index.cc:424:11: warning: exception of type 'char *' will be caught by earlier handler [-Wexceptions]
                        catch( char *e ) { perr( e ) ; }
                               ^
index.cc:423:17: note: for type 'const char *'
                        catch( const char *e ) { perr( e ) ; }
                                     ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from misc_streams.cc:5:
In file included from ./misc_streams.h:4:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
misc_streams.cc:332:42: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
{ return Cons( Make_Unsigned( x & ~(~0LL << 31) ), Cons( Make_Unsigned( x >> 31 ), l ) ) ; }
                                    ~~~~ ^
misc_streams.cc:489:2: warning: 'auto_ptr<std::basic_istream<char> >' is deprecated [-Wdeprecated-declarations]
        auto_ptr< istream > deffile( p.first ) ;
        ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_istream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
1 warning generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c index.cc -o index.o >/dev/null 2>&1
26 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c misc_streams.cc -o misc_streams.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output_streams.lo output_streams.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc  -fPIC -DPIC -o .libs/output_streams.o
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc  -fPIC -DPIC -o .libs/sequence.o
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
In file included from ./stream.h:20:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
In file included from ./output_streams.h:21:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:45:3: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                auto_ptr< std::ostream > out_ ;
                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:72:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:123:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:138:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:149:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from output_streams.cc:21:
./output_streams.h:176:8: warning: 'auto_ptr<std::basic_ostream<char> >' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< std::ostream > out_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<std::basic_ostream<char> >' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
In file included from ./stream.h:20:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from sequence.cc:23:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stream.lo stream.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c stream.cc  -fPIC -DPIC -o .libs/stream.o
24 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.cc -o sequence.o >/dev/null 2>&1
30 warnings generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c output_streams.cc -o output_streams.o >/dev/null 2>&1
In file included from stream.cc:21:
./compress_stream.h:34:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:97:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                InflateStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is ), total_( 0 )
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:198:26: warning: '~DeflateStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r != Z_OK ) throw zs_.msg ;
                                                     ^
./compress_stream.h:183:11: note: destructor has a implicit non-throwing exception specification
                virtual ~DeflateStream()
                        ^
./compress_stream.h:225:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:278:22: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BunzipStream( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is ) : is_( is )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:21:
./compress_stream.h:379:26: warning: '~BzipStream' has a non-throwing exception specification but can still throw [-Wexceptions]
                                else if( r < BZ_OK ) throw BzipError( r ) ;
                                                     ^
./compress_stream.h:364:11: note: destructor has a implicit non-throwing exception specification
                virtual ~BzipStream()
                        ^
./compress_stream.h:395:7: warning: 'auto_ptr<google::protobuf::io::FileOutputStream>' is deprecated [-Wdeprecated-declarations]
        std::auto_ptr< google::protobuf::io::FileOutputStream > fos(
             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.cc
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc  -fPIC -DPIC -o .libs/util.o
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:319:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:323:20: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:345:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:385:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > zos_ ;      // final output
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:387:8: warning: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayOutputStream > aos_ ;         // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:414:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:416:8: warning: 'auto_ptr<google::protobuf::io::ArrayInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ArrayInputStream > ais_ ;          // output to buffer
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ArrayInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:422:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) ;
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:747:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:762:21: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                FastqReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, bool solexa_scores, char origin ) :
                                  ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:772:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:795:19: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SamReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& n, const string& g ) :
                                ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:806:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:821:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                SffReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name ) : 
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:832:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:846:14: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) ;
                           ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
In file included from stream.cc:22:
In file included from ./misc_streams.h:4:
./stream.h:880:8: warning: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' is deprecated [-Wdeprecated-declarations]
                std::auto_ptr< google::protobuf::io::ZeroCopyOutputStream > os_ ;
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyOutputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:81:30: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
AnfoReader::AnfoReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name )
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:373:20: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
        comp_size &= ~(~0 << 28) ;
                       ~~ ^
stream.cc:421:36: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
ChunkedReader::ChunkedReader( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const std::string& name ) : is_( is ), name_( name )
                                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1093:9: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is_ ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1114:29: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        StreamWithProgress( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, int64_t total )
                                                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1149:40: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
        StreamHolder make_input_stream_( std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, bool solexa_scores, char origin, const string& genome )
                                              ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1179:9: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > bs( new BunzipStream( is ) ) ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1189:9: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::ZeroCopyInputStream > zs( new InflateStream( is ) ) ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1233:9: warning: 'auto_ptr<google::protobuf::io::FileInputStream>' is deprecated [-Wdeprecated-declarations]
                        std::auto_ptr< google::protobuf::io::FileInputStream > s( new google::protobuf::io::FileInputStream( fd ) ) ;
                             ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::FileInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1238:12: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
                                                std::auto_ptr<google::protobuf::io::ZeroCopyInputStream>(s), name_, st.st_size ) ) ;
                                                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
stream.cc:1378:23: warning: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' is deprecated [-Wdeprecated-declarations]
BamReader::BamReader( auto_ptr< google::protobuf::io::ZeroCopyInputStream > is, const string& name, const string& genome ) : 
                      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/backward/auto_ptr.h:287:7: note: 'auto_ptr<google::protobuf::io::ZeroCopyInputStream>' has been explicitly marked deprecated here
    } _GLIBCXX_DEPRECATED;
      ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/x86_64-linux-gnu/c++/9/bits/c++config.h:86:46: note: expanded from macro '_GLIBCXX_DEPRECATED'
# define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__))
                                             ^
util.cc:40:9: warning: exception of type 'char *' will be caught by earlier handler [-Wexceptions]
        catch( char *e ) { perr( e ) ; }
               ^
util.cc:39:15: note: for type 'const char *'
        catch( const char *e ) { perr( e ) ; }
                     ^
In file included from stream.cc:21:
In file included from ./compress_stream.h:20:
In file included from ./util.h:26:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/sstream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/istream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/ios:42:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/ios_base.h:41:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/locale_classes.h:40:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/string:48:
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_function.h:386:20: error: call to function 'operator<' that is neither visible in the template definition nor found by argument-dependent lookup
      { return __x < __y; }
                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:2559:11: note: in instantiation of member function 'std::less<config::Policy>::operator()' requested here
              || _M_impl._M_key_compare(__k,
                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_set.h:795:21: note: in instantiation of member function 'std::_Rb_tree<config::Policy, config::Policy, std::_Identity<config::Policy>, std::less<config::Policy>, std::allocator<config::Policy> >::find' requested here
      { return _M_t.find(__x); }
                    ^
stream.cc:479:9: note: in instantiation of member function 'std::set<config::Policy, std::less<config::Policy>, std::allocator<config::Policy> >::find' requested here
                if( s.find( r.Get(b) ) == s.end() )
                      ^
stream.cc:531:2: note: in instantiation of function template specialization 'streams::nub<config::Policy>' requested here
        nub( *hdr.mutable_config()->mutable_policy() ) ;
        ^
stream.cc:48:7: note: 'operator<' should be declared prior to the call site or in an associated namespace of one of its arguments
        bool operator < ( const config::Policy& p, const config::Policy& q )
             ^
In file included from stream.cc:21:
In file included from ./compress_stream.h:22:
In file included from /usr/include/google/protobuf/io/zero_copy_stream.h:111:
In file included from /usr/include/google/protobuf/stubs/common.h:40:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/map:60:
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:772:2: error: static_assert failed due to requirement 'std::__is_invocable<std::less<config::Policy> &, const config::Policy &, const config::Policy &>{}' "comparison object must be invocable with two arguments of key type"
        static_assert(__is_invocable<_Compare&, const _Key&, const _Key&>{},
        ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:1929:30: note: in instantiation of member function 'std::_Rb_tree<config::Policy, config::Policy, std::_Identity<config::Policy>, std::less<config::Policy>, std::allocator<config::Policy> >::_S_key' requested here
        if (!_M_impl._M_key_compare(_S_key(__x), __k))
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:2557:22: note: in instantiation of member function 'std::_Rb_tree<config::Policy, config::Policy, std::_Identity<config::Policy>, std::less<config::Policy>, std::allocator<config::Policy> >::_M_lower_bound' requested here
      iterator __j = _M_lower_bound(_M_begin(), _M_end(), __k);
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_set.h:795:21: note: in instantiation of member function 'std::_Rb_tree<config::Policy, config::Policy, std::_Identity<config::Policy>, std::less<config::Policy>, std::allocator<config::Policy> >::find' requested here
      { return _M_t.find(__x); }
                    ^
stream.cc:479:9: note: in instantiation of member function 'std::set<config::Policy, std::less<config::Policy>, std::allocator<config::Policy> >::find' requested here
                if( s.find( r.Get(b) ) == s.end() )
                      ^
stream.cc:531:2: note: in instantiation of function template specialization 'streams::nub<config::Policy>' requested here
        nub( *hdr.mutable_config()->mutable_policy() ) ;
        ^
In file included from stream.cc:21:
In file included from ./compress_stream.h:20:
In file included from ./util.h:26:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/sstream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/istream:38:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/ios:42:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/ios_base.h:41:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/locale_classes.h:40:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/string:48:
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_function.h:386:20: error: call to function 'operator<' that is neither visible in the template definition nor found by argument-dependent lookup
      { return __x < __y; }
                   ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:2559:11: note: in instantiation of member function 'std::less<output::Read>::operator()' requested here
              || _M_impl._M_key_compare(__k,
                 ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_set.h:795:21: note: in instantiation of member function 'std::_Rb_tree<output::Read, output::Read, std::_Identity<output::Read>, std::less<output::Read>, std::allocator<output::Read> >::find' requested here
      { return _M_t.find(__x); }
                    ^
stream.cc:479:9: note: in instantiation of member function 'std::set<output::Read, std::less<output::Read>, std::allocator<output::Read> >::find' requested here
                if( s.find( r.Get(b) ) == s.end() )
                      ^
stream.cc:612:2: note: in instantiation of function template specialization 'streams::nub<output::Read>' requested here
        nub( *lhs.mutable_members() ) ;
        ^
stream.cc:45:7: note: 'operator<' should be declared prior to the call site or in an associated namespace of one of its arguments
        bool operator < ( const output::Read& p, const output::Read& q )
             ^
In file included from stream.cc:21:
In file included from ./compress_stream.h:22:
In file included from /usr/include/google/protobuf/io/zero_copy_stream.h:111:
In file included from /usr/include/google/protobuf/stubs/common.h:40:
In file included from /usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/map:60:
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:772:2: error: static_assert failed due to requirement 'std::__is_invocable<std::less<output::Read> &, const output::Read &, const output::Read &>{}' "comparison object must be invocable with two arguments of key type"
        static_assert(__is_invocable<_Compare&, const _Key&, const _Key&>{},
        ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:1929:30: note: in instantiation of member function 'std::_Rb_tree<output::Read, output::Read, std::_Identity<output::Read>, std::less<output::Read>, std::allocator<output::Read> >::_S_key' requested here
        if (!_M_impl._M_key_compare(_S_key(__x), __k))
                                    ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_tree.h:2557:22: note: in instantiation of member function 'std::_Rb_tree<output::Read, output::Read, std::_Identity<output::Read>, std::less<output::Read>, std::allocator<output::Read> >::_M_lower_bound' requested here
      iterator __j = _M_lower_bound(_M_begin(), _M_end(), __k);
                     ^
/usr/bin/../lib/gcc/x86_64-linux-gnu/9/../../../../include/c++/9/bits/stl_set.h:795:21: note: in instantiation of member function 'std::_Rb_tree<output::Read, output::Read, std::_Identity<output::Read>, std::less<output::Read>, std::allocator<output::Read> >::find' requested here
      { return _M_t.find(__x); }
                    ^
stream.cc:479:9: note: in instantiation of member function 'std::set<output::Read, std::less<output::Read>, std::allocator<output::Read> >::find' requested here
                if( s.find( r.Get(b) ) == s.end() )
                      ^
stream.cc:612:2: note: in instantiation of function template specialization 'streams::nub<output::Read>' requested here
        nub( *lhs.mutable_members() ) ;
        ^
35 warnings and 4 errors generated.
make[4]: *** [Makefile:774: stream.lo] Error 1
make[4]: *** Waiting for unfinished jobs....
1 warning generated.
libtool: compile:  g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.cc -o util.o >/dev/null 2>&1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: *** [Makefile:437: all] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: *** [Makefile:462: all-recursive] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [Makefile:370: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make: *** [debian/rules:12: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-02-25T17:58:05Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: binary
Build-Space: 23156
Build-Time: 32
Distribution: unstable
Fail-Stage: build
Host Architecture: amd64
Install-Time: 5
Job: anfo_0.98-7
Machine Architecture: amd64
Package: anfo
Package-Time: 54
Source-Version: 0.98-7
Space: 23156
Status: attempted
Version: 0.98-7
--------------------------------------------------------------------------------
Finished at 2020-02-25T17:58:05Z
Build needed 00:00:54, 23156k disk space
E: Build failure (dpkg-buildpackage died)
DC-Status: Failed 54.3506362s