DC-Build-Header: libgenome 1.3.11+svn20110227.4616-2 / 2020-02-25 18:36:38 +0000 DC-Task: type:rebuild-binarch-only source:libgenome version:1.3.11+svn20110227.4616-2 chroot:unstable esttime:67 logfile:/tmp/libgenome_1.3.11+svn20110227.4616-2_unstable_clang9.log modes:clang9:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang9 libgenome_1.3.11+svn20110227.4616-2' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-11-13.eu-central-1.compute.internal +==============================================================================+ | libgenome 1.3.11+svn20110227.4616-2 (amd64) Tue, 25 Feb 2020 18:36:39 +0000 | +==============================================================================+ Package: libgenome Version: 1.3.11+svn20110227.4616-2 Source Version: 1.3.11+svn20110227.4616-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-abc20a1d-154c-450b-977e-389ba7faaae2' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang9 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=9 + echo 'Install of clang-9' Install of clang-9 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:9 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-1413.15.pdiff [16.3 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-1413.15.pdiff [18.4 kB] Get:9 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-1413.15.pdiff [16.3 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-1413.15.pdiff [18.4 kB] Get:16 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB] Fetched 6638 kB in 2s (3868 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-9 libomp-9-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libgcc-9-dev libllvm9 libmpx2 libobjc-8-dev libobjc4 libomp5-9 libstdc++-8-dev libstdc++-9-dev libz3-4 Suggested packages: clang-9-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib libomp-9-doc libstdc++-8-doc libstdc++-9-doc Recommended packages: llvm-9-dev python3 The following NEW packages will be installed: clang-9 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libllvm9 libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-9-dev libomp5-9 libstdc++-8-dev libz3-4 The following packages will be upgraded: cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev 7 upgraded, 21 newly installed, 0 to remove and 3 not upgraded. Need to get 78.9 MB of archives. After this operation, 237 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp9 amd64 1:9.0.1-8 [8429 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B] Get:23 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-9-dev amd64 1:9.0.1-8 [3727 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 clang-9 amd64 1:9.0.1-8 [1156 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp5-9 amd64 1:9.0.1-8 [333 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libomp-9-dev amd64 1:9.0.1-8 [66.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.9 MB in 1s (95.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12119 files and directories currently installed.) Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ... Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ... Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ... 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Setting up gcc-8-base:amd64 (8.3.0-29) ... Setting up libmpx2:amd64 (8.3.0-29) ... Setting up libc6-i386 (2.29-10) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up gcc-9-base:amd64 (9.2.1-30) ... Setting up libomp5-9:amd64 (1:9.0.1-8) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libasan5:amd64 (9.2.1-30) ... Setting up lib32gcc-s1 (10-20200222-1) ... Setting up libgcc-8-dev:amd64 (8.3.0-29) ... Setting up libomp-9-dev (1:9.0.1-8) ... Setting up cpp-9 (9.2.1-30) ... Setting up libllvm9:amd64 (1:9.0.1-8) ... Setting up libstdc++-8-dev:amd64 (8.3.0-29) ... Setting up libclang-cpp9 (1:9.0.1-8) ... Setting up lib32gcc1 (1:10-20200222-1) ... Setting up libgcc-9-dev:amd64 (9.2.1-30) ... Setting up libobjc-8-dev:amd64 (8.3.0-29) ... Setting up lib32stdc++6 (10-20200222-1) ... Setting up libobjc-9-dev:amd64 (9.2.1-30) ... Setting up libclang-common-9-dev (1:9.0.1-8) ... Setting up gcc-9 (9.2.1-30) ... Setting up libstdc++-9-dev:amd64 (9.2.1-30) ... Setting up clang-9 (1:9.0.1-8) ... Setting up g++-9 (9.2.1-30) ... Processing triggers for libc-bin (2.29-10) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-9 g++-4.6 + ln -s clang-9 gcc-4.6 + ln -s clang-9 cpp-4.6 + ln -s clang-9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-9 g++-4.7 + ln -s clang-9 gcc-4.7 + ln -s clang-9 cpp-4.7 + ln -s clang-9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-9 g++-4.8 + ln -s clang-9 gcc-4.8 + ln -s clang-9 cpp-4.8 + ln -s clang-9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-9 g++-4.9 + ln -s clang-9 gcc-4.9 + ln -s clang-9 cpp-4.9 + ln -s clang-9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-9 g++-5 + ln -s clang-9 gcc-5 + ln -s clang-9 cpp-5 + ln -s clang-9 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-9 g++-6 + ln -s clang-9 gcc-6 + ln -s clang-9 cpp-6 + ln -s clang-9 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-9 g++-7 + ln -s clang-9 gcc-7 + ln -s clang-9 cpp-7 + ln -s clang-9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-9 g++-8 + ln -s clang-9 gcc-8 + ln -s clang-9 cpp-8 + ln -s clang-9 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-9 g++-9 + ln -s clang-9 gcc-9 + ln -s clang-9 cpp-9 + ln -s clang-9 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-9 g++-10 + ln -s clang-9 gcc-10 + ln -s clang-9 cpp-10 + ln -s clang-9 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/libgenome-FCXeha + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang9'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libgenome-FCXeha/resolver-xlgGgb' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash libgmp10 zlib1g 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1722 kB of archives. After this operation, 4096 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 bash amd64 5.0-6 [1379 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1722 kB in 0s (74.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../archives/bash_5.0-6_amd64.deb ... Unpacking bash (5.0-6) over (5.0-5) ... Setting up bash (5.0-6) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libgenome' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libgenome.git Please use: git clone https://salsa.debian.org/med-team/libgenome.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 93.6 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main libgenome 1.3.11+svn20110227.4616-2 (dsc) [2132 B] Get:2 http://127.0.0.1:12990/debian sid/main libgenome 1.3.11+svn20110227.4616-2 (tar) [81.1 kB] Get:3 http://127.0.0.1:12990/debian sid/main libgenome 1.3.11+svn20110227.4616-2 (diff) [10.3 kB] Fetched 93.6 kB in 0s (1282 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libgenome-FCXeha/libgenome-1.3.11+svn20110227.4616' with '<>' I: NOTICE: Log filtering will replace 'build/libgenome-FCXeha' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.61), build-essential, fakeroot Filtered Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.61), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [380 B] Get:5 copy:/<>/apt_archive ./ Packages [462 B] Fetched 1799 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After this operation, 70.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [888 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 d-shlibs all 0.88 [17.4 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.2 MB in 0s (77.9 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../00-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... 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Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.9_all.deb ... Unpacking debhelper (12.9) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../34-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.9) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libicu63:amd64 (63.2-2) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.88) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-13) ... Setting up m4 (1.4.18-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-9_1:9.0.1-8 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200222-1 libclang-common-9-dev_1:9.0.1-8 libclang-cpp9_1:9.0.1-8 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libitm1_10-20200222-1 libllvm9_1:9.0.1-8 liblsan0_10-20200222-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-29 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libobjc-8-dev_8.3.0-29 libobjc-9-dev_9.2.1-30 libobjc4_10-20200222-1 libomp-9-dev_1:9.0.1-8 libomp5-9_1:9.0.1-8 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libquadmath0_10-20200222-1 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.10+dfsg-3 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgenome Binary: libgenome-dev, libgenome0 Architecture: any Version: 1.3.11+svn20110227.4616-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://sourceforge.net/projects/libgenome/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/libgenome Vcs-Git: https://salsa.debian.org/med-team/libgenome.git Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.61) Package-List: libgenome-dev deb libdevel optional arch=any libgenome0 deb libs optional arch=any Checksums-Sha1: ff883500ecf525a078e542ba2eacf7918f7a02f8 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 9799512d370bcd335d29558f685f557abe364775 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz Checksums-Sha256: a2ca77c2a4e9c6239d9cc2fd84b84ffa75444283e3c3d34f8e724525b6a1b677 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 1b2b9cd052802604449bc5898caf90d3bb0606ef837d0385b2cfe4f21f9ba94d 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz Files: 505900cdacc864d2a52847ff47b8ae37 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz c6ae492c8d7d746704765c1dee7a4a61 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAltxoBUACgkQr8/sjmac 4cJ30Q//bMzzTOci4UuK+Pf7ta/C7USR25nsdx0dJcSMA/lZa3ykYspNHsVEaQ1Q 9fJzohWsAAgvNShgVbnZ/2/D0qJpeJsPK8EbtrKC89HD9aBu/c5Z4pHmN66XXd1O 6SdDHA0PHDMLiww1TlEoN6FMb7xLVMDKYsj0spj2HmCnPSYjpcVz0YRvY7QvJ7Jp zhn6OAj2obvaDe9TyyC+fz+c5xQNdIgjaDc576tSkzjo/wNudZ7MMlml43sZ2KBg /VWVbzJs2KtB7qLQEDsEqOFvRbb2k6M8IHfVK8YtLxbAuAtE+Dg3z53s5np1SzhI kEOYQi9iUS8GD4ZUxx8XgooEcASzoaNI5I8ighHnaU1w+STMEDXoTIwOuz4gJCEM F7qBn/yF1dUfcqTJnJyxXtXwn+5lqNRCnR3bmsRADkTyItTphAvNi3cRxIsu2Y48 G+gNtgr/4vJSA21m5hIc8UhHnJgXZWsa7Cg8qUjOCl46EUtmL0jEobjX0tZqg8RK cjyYZdK94mKf9MLOXL+TdZfSTpu+/bwwYN1B2FkGX7CqGHXbuI/wZAHmiQWTQChf r9KrV50/mncWi1T1SkPNkXlbOQxl9XGDnQ4etQw2HNT+FnqNh5xqqM0A5bQqeG+Q laQmtvWgxtsUmRoXlxvDwFWADpGh7cFlB4sw5Ii650yEKjVavH4= =HdlD -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 13 15:13:25 2018 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgenome_1.3.11+svn20110227.4616-2.dsc dpkg-source: info: extracting libgenome in /<> dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-abc20a1d-154c-450b-977e-389ba7faaae2 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ANSI C header files... (cached) yes checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking whether time.h and sys/time.h may both be included... yes checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in libGenome make[3]: Entering directory '/<>/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFilter.lo gnFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnCompare.lo gnCompare.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnTranslator.lo gnTranslator.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceFactory.lo gnSourceFactory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFeature.lo gnFeature.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time 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'/<>/libGenome' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/<>/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in libGenome make[2]: Entering directory '/<>/libGenome' make[3]: Entering directory '/<>/libGenome' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/<>/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/<>/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/<>/libGenome' make[2]: Leaving directory '/<>/libGenome' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-2_amd64) +++ dpkg-gensymbolsCLN_4S 2020-02-25 18:37:26.356057687 +0000 @@ -3,7 +3,7 @@ _ZN6genome10gnBaseSpec5ClearEv@Base 1.3.11+svn20110227.4616 _ZN6genome10gnBaseSpec7SetNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome10gnBaseSpecD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome10gnBaseSpecD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome10gnBaseSpecD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome10gnBaseSpecD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome10gnLocation12MoveNegativeEy@Base 1.3.11+svn20110227.4616 _ZN6genome10gnLocation12MovePositiveEy@Base 1.3.11+svn20110227.4616 @@ -23,7 +23,7 @@ _ZN6genome10gnLocationC2EyyNS0_14gnLocationTypeENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome10gnLocationC2EyyyyNS0_14gnLocationTypeENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome10gnLocationD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome10gnLocationD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome10gnLocationD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome10gnLocationD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome10gnSequence10LoadSourceENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome10gnSequence10addFeatureEPNS_13gnBaseFeatureE@Base 1.3.11+svn20110227.4616 @@ -69,11 +69,11 @@ _ZN6genome10parseValueERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome11WriteHeaderINS_12gnContigSpecEEEvPNS_11gnMultiSpecIT_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERSt14basic_ofstreamIcS9_E@Base 1.3.11+svn20110227.4616 _ZN6genome11gnException9AddCallerEPKc@Base 1.3.11+svn20110227.4616 - _ZN6genome11gnExceptionC1EPKcjS2_RNS_15gnExceptionCodeES2_@Base 1.3.11+svn20110227.4616 - _ZN6genome11gnExceptionC1ERKS0_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome11gnExceptionC1EPKcjS2_RNS_15gnExceptionCodeES2_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome11gnExceptionC1ERKS0_@Base 1.3.11+svn20110227.4616 _ZN6genome11gnExceptionC2EPKcjS2_RNS_15gnExceptionCodeES2_@Base 1.3.11+svn20110227.4616 - _ZN6genome11gnExceptionC2ERKS0_@Base 1.3.11+svn20110227.4616 - _ZN6genome11gnExceptionD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome11gnExceptionC2ERKS0_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome11gnExceptionD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome11gnExceptionD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome11gnFASSource11ParseStreamERSi@Base 1.3.11+svn20110227.4616 _ZN6genome11gnFASSource11SeqReadImplEyPcRyj@Base 1.3.11+svn20110227.4616 @@ -113,7 +113,7 @@ _ZN6genome11gnMultiSpecINS_12gnContigSpecEE9AddHeaderEPNS_12gnBaseHeaderEj@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_12gnContigSpecEE9CropStartEy@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_12gnContigSpecEED0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome11gnMultiSpecINS_12gnContigSpecEED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome11gnMultiSpecINS_12gnContigSpecEED1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_12gnContigSpecEED2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEE10RemoveSpecEj@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEE12RemoveHeaderEj@Base 1.3.11+svn20110227.4616 @@ -124,7 +124,7 @@ _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEE9AddHeaderEPNS_12gnBaseHeaderEj@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEE9CropStartEy@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEED0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEED1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome11gnMultiSpecINS_14gnFragmentSpecEED2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome11gnRAWSource11ParseStreamERSi@Base 1.3.11+svn20110227.4616 _ZN6genome11gnRAWSource5WriteERNS_10gnSequenceERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 @@ -153,6 +153,8 @@ _ZN6genome11removeSpaceERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome12getExtStringENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome12gnBaseFilter7SetNameENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 + _ZN6genome12gnBaseFilterD0Ev@Base 1.3.11+svn20110227.4616-2 + _ZN6genome12gnBaseFilterD2Ev@Base 1.3.11+svn20110227.4616-2 _ZN6genome12gnContigSpec13SetSourceNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome12gnContigSpec20SetReverseComplementEh@Base 1.3.11+svn20110227.4616 _ZN6genome12gnContigSpec20SetSourceContigIndexEj@Base 1.3.11+svn20110227.4616 @@ -179,12 +181,12 @@ _ZN6genome12gnFileSource4ReadEyPcRy@Base 1.3.11+svn20110227.4616 _ZN6genome12gnFileSource5CloseEv@Base 1.3.11+svn20110227.4616 _ZN6genome12gnFileSource9SetFilterEPNS_8gnFilterE@Base 1.3.11+svn20110227.4616 - _ZN6genome12gnFileSourceC1ERKS0_@Base 1.3.11+svn20110227.4616 - _ZN6genome12gnFileSourceC1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome12gnFileSourceC1ERKS0_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome12gnFileSourceC1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12gnFileSourceC2ERKS0_@Base 1.3.11+svn20110227.4616 _ZN6genome12gnFileSourceC2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12gnFileSourceD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome12gnFileSourceD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome12gnFileSourceD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12gnFileSourceD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12gnGenomeSpec10AddFeatureEPNS_13gnBaseFeatureE@Base 1.3.11+svn20110227.4616 _ZN6genome12gnGenomeSpec13RemoveFeatureEj@Base 1.3.11+svn20110227.4616 @@ -235,7 +237,7 @@ _ZN6genome12gnTranslatorC2ERKS0_@Base 1.3.11+svn20110227.4616 _ZN6genome12gnTranslatorC2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12gnTranslatorD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome12gnTranslatorD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome12gnTranslatorD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12gnTranslatorD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome12isWhiteSpaceEc@Base 1.3.11+svn20110227.4616 _ZN6genome12uintToStringB5cxx11Ej@Base 1.3.11+svn20110227.4616 @@ -260,8 +262,8 @@ _ZN6genome13gnBaseFeature7SetSpecEPNS_14gnFragmentSpecE@Base 1.3.11+svn20110227.4616 _ZN6genome13gnBaseFeature9CropStartEy@Base 1.3.11+svn20110227.4616 _ZN6genome13gnBaseFeature9SetBrokenEh@Base 1.3.11+svn20110227.4616 - _ZN6genome13gnBaseFeatureC1ERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjPNS_14gnFragmentSpecENS_10gnLocation14gnLocationTypeEh@Base 1.3.11+svn20110227.4616 - _ZN6genome13gnBaseFeatureC1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome13gnBaseFeatureC1ERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjPNS_14gnFragmentSpecENS_10gnLocation14gnLocationTypeEh@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome13gnBaseFeatureC1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome13gnBaseFeatureC2ERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjPNS_14gnFragmentSpecENS_10gnLocation14gnLocationTypeEh@Base 1.3.11+svn20110227.4616 _ZN6genome13gnBaseFeatureC2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome13gnBaseFeatureD0Ev@Base 1.3.11+svn20110227.4616 @@ -291,9 +293,9 @@ _ZN6genome14gnSourceHeaderD0Ev@Base 1.3.11+svn20110227.4616 _ZN6genome14gnSourceHeaderD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome14gnSourceHeaderD2Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome14gnStringHeaderD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome14gnStringHeaderD1Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome14gnStringHeaderD2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome14gnStringHeaderD0Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome14gnStringHeaderD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome14gnStringHeaderD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome14parseUintValueERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome14removeEndSpaceERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome14tokenizeStringB5cxx11EPKcjc@Base 1.3.11+svn20110227.4616 @@ -322,7 +324,7 @@ _ZN6genome16gnFastTranslatorC2ERKS0_@Base 1.3.11+svn20110227.4616 _ZN6genome16gnFastTranslatorC2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome16gnFastTranslatorD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome16gnFastTranslatorD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome16gnFastTranslatorD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome16gnFastTranslatorD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome17gnSourceQualifierC1EPNS_12gnBaseSourceERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjj@Base 1.3.11+svn20110227.4616 _ZN6genome17gnSourceQualifierC1ERKS0_@Base 1.3.11+svn20110227.4616 @@ -333,8 +335,9 @@ _ZN6genome17gnSourceQualifierD0Ev@Base 1.3.11+svn20110227.4616 _ZN6genome17gnSourceQualifierD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome17gnSourceQualifierD2Ev@Base 1.3.11+svn20110227.4616 + _ZN6genome17gnStringQualifierC2ERKS0_@Base 1.3.11+svn20110227.4616-2 _ZN6genome17gnStringQualifierD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome17gnStringQualifierD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome17gnStringQualifierD1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome17gnStringQualifierD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome18getFileNoExtStringENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZN6genome21standardizePathStringERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 @@ -347,8 +350,8 @@ _ZN6genome23gnPosSpecificTranslatorC2ERKS0_@Base 1.3.11+svn20110227.4616 _ZN6genome23gnPosSpecificTranslatorC2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome23gnPosSpecificTranslatorD0Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome23gnPosSpecificTranslatorD1Ev@Base 1.3.11+svn20110227.4616 - _ZN6genome23gnPosSpecificTranslatorD2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome23gnPosSpecificTranslatorD1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZN6genome23gnPosSpecificTranslatorD2Ev@Base 1.3.11+svn20110227.4616 _ZN6genome7isSpaceEc@Base 1.3.11+svn20110227.4616 _ZN6genome8gnFilter14DNAtoRNAFilterEv@Base 1.3.11+svn20110227.4616 _ZN6genome8gnFilter14RNAtoDNAFilterEv@Base 1.3.11+svn20110227.4616 @@ -392,6 +395,8 @@ _ZN6genome9gnCompare19CreateDNAComparatorEv@Base 1.3.11+svn20110227.4616 _ZN6genome9gnCompare19CreateRNAComparatorEv@Base 1.3.11+svn20110227.4616 _ZN6genome9gnCompare23CreateProteinComparatorEv@Base 1.3.11+svn20110227.4616 + _ZN6genome9gnCompare7SetPairEcc@Base 1.3.11+svn20110227.4616-2 + _ZN6genome9gnCompare9SetSingleEc@Base 1.3.11+svn20110227.4616-2 _ZN6genome9gnCompareC1ENS0_13gnCompareTypeE@Base 1.3.11+svn20110227.4616 _ZN6genome9gnCompareC1Ev@Base 1.3.11+svn20110227.4616 _ZN6genome9gnCompareC2ENS0_13gnCompareTypeE@Base 1.3.11+svn20110227.4616 @@ -577,10 +582,10 @@ _ZNK6genome14gnSourceHeader5CloneEv@Base 1.3.11+svn20110227.4616 _ZNK6genome14gnSourceHeader9GetHeaderB5cxx11Ev@Base 1.3.11+svn20110227.4616 _ZNK6genome14gnSourceHeader9GetLengthEv@Base 1.3.11+svn20110227.4616 - _ZNK6genome14gnStringHeader13GetHeaderNameB5cxx11Ev@Base 1.3.11+svn20110227.4616 - _ZNK6genome14gnStringHeader5CloneEv@Base 1.3.11+svn20110227.4616 - _ZNK6genome14gnStringHeader9GetHeaderB5cxx11Ev@Base 1.3.11+svn20110227.4616 - _ZNK6genome14gnStringHeader9GetLengthEv@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNK6genome14gnStringHeader13GetHeaderNameB5cxx11Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNK6genome14gnStringHeader5CloneEv@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNK6genome14gnStringHeader9GetHeaderB5cxx11Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNK6genome14gnStringHeader9GetLengthEv@Base 1.3.11+svn20110227.4616 _ZNK6genome15gnSourceFactory10PathExistsENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZNK6genome15gnSourceFactory14GetSourceClassERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 _ZNK6genome15gnSourceFactory14HasSourceClassERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.3.11+svn20110227.4616 @@ -618,47 +623,66 @@ _ZNK6genome9gnCompare8ContainsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_h@Base 1.3.11+svn20110227.4616 _ZNK6genome9gnCompare8ContainsEcch@Base 1.3.11+svn20110227.4616 _ZNK6genome9gnFeature5CloneEv@Base 1.3.11+svn20110227.4616 - _ZNKSt5ctypeIcE8do_widenEc@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNKSt5ctypeIcE8do_widenEc@Base 1.3.11+svn20110227.4616 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 + _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 1.3.11+svn20110227.4616-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEEPS9_EET0_T_SI_SH_@Base 1.3.11+svn20110227.4616-2 + _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_EET0_T_SA_S9_@Base 1.3.11+svn20110227.4616-2 + _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixERS9_@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE13_M_insert_auxIS5_EEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEOT_@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE20_M_allocate_and_copyIN9__gnu_cxx17__normal_iteratorIPKS5_S7_EEEEPS5_mT_SF_@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS5_S7_EERSA_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE9push_backERKS5_@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 - _ZNSt7__cxx114listIPKN6genome12gnBaseFilterESaIS4_EE18_M_assign_dispatchISt20_List_const_iteratorIS4_EEEvT_SA_St12__false_type@Base 1.3.11+svn20110227.4616 - _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome15gnBaseQualifierESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPcEEvT_S7_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 + _ZNSt7__cxx114listINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE14_M_create_nodeIJRKS5_EEEPSt10_List_nodeIS5_EDpOT_@Base 1.3.11+svn20110227.4616-2 + _ZNSt7__cxx114listINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt7__cxx114listIPKN6genome12gnBaseFilterESaIS4_EE18_M_assign_dispatchISt20_List_const_iteratorIS4_EEEvT_SA_St12__false_type@Base 1.3.11+svn20110227.4616 + _ZNSt7__cxx114listIPKN6genome12gnBaseFilterESaIS4_EE6insertISt20_List_const_iteratorIS4_EvEESt14_List_iteratorIS4_ES9_T_SC_@Base 1.3.11+svn20110227.4616-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE10_M_insert_ISB_NSH_11_Alloc_nodeEEESt17_Rb_tree_iteratorISB_EPSt18_Rb_tree_node_baseSN_OT_RT0_@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE16_M_insert_uniqueISB_EES6_ISt17_Rb_tree_iteratorISB_EbEOT_@Base 1.3.11+svn20110227.4616 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE17_M_construct_nodeIJSB_EEEvPSt13_Rb_tree_nodeISB_EDpOT_@Base 1.3.11+svn20110227.4616-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616-2 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 1.3.11+svn20110227.4616 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE17_M_construct_nodeIJRKS8_EEEvPSt13_Rb_tree_nodeIS8_EDpOT_@Base 1.3.11+svn20110227.4616-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE17_M_construct_nodeIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEEvPSt13_Rb_tree_nodeIS8_EDpOT_@Base 1.3.11+svn20110227.4616-2 + _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 1.3.11+svn20110227.4616-2 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 1.3.11+svn20110227.4616 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 1.3.11+svn20110227.4616 @@ -666,7 +690,7 @@ _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 1.3.11+svn20110227.4616 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EEaSERKSE_@Base 1.3.11+svn20110227.4616 _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EERKS8_SA_@Base 1.3.11+svn20110227.4616 - _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EES5_RKS8_@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnBaseSpecE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnLocationE@Base 1.3.11+svn20110227.4616 _ZTIN6genome10gnSequenceE@Base 1.3.11+svn20110227.4616 @@ -690,7 +714,7 @@ _ZTIN6genome13gnBaseFeatureE@Base 1.3.11+svn20110227.4616 _ZTIN6genome14gnFragmentSpecE@Base 1.3.11+svn20110227.4616 _ZTIN6genome14gnSourceHeaderE@Base 1.3.11+svn20110227.4616 - _ZTIN6genome14gnStringHeaderE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZTIN6genome14gnStringHeaderE@Base 1.3.11+svn20110227.4616 _ZTIN6genome15gnBaseQualifierE@Base 1.3.11+svn20110227.4616 _ZTIN6genome16gnFastTranslatorE@Base 1.3.11+svn20110227.4616 _ZTIN6genome17gnSourceQualifierE@Base 1.3.11+svn20110227.4616 @@ -723,7 +747,7 @@ _ZTSN6genome13gnBaseFeatureE@Base 1.3.11+svn20110227.4616 _ZTSN6genome14gnFragmentSpecE@Base 1.3.11+svn20110227.4616 _ZTSN6genome14gnSourceHeaderE@Base 1.3.11+svn20110227.4616 - _ZTSN6genome14gnStringHeaderE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZTSN6genome14gnStringHeaderE@Base 1.3.11+svn20110227.4616 _ZTSN6genome15gnBaseQualifierE@Base 1.3.11+svn20110227.4616 _ZTSN6genome16gnFastTranslatorE@Base 1.3.11+svn20110227.4616 _ZTSN6genome17gnSourceQualifierE@Base 1.3.11+svn20110227.4616 @@ -743,7 +767,7 @@ _ZTVN6genome11gnRAWSourceE@Base 1.3.11+svn20110227.4616 _ZTVN6genome11gnSEQSourceE@Base 1.3.11+svn20110227.4616 _ZTVN6genome12gnBaseFilterE@Base 1.3.11+svn20110227.4616 - _ZTVN6genome12gnContigSpecE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZTVN6genome12gnContigSpecE@Base 1.3.11+svn20110227.4616 _ZTVN6genome12gnFileContigE@Base 1.3.11+svn20110227.4616 _ZTVN6genome12gnFileSourceE@Base 1.3.11+svn20110227.4616 _ZTVN6genome12gnGenomeSpecE@Base 1.3.11+svn20110227.4616 @@ -753,7 +777,7 @@ _ZTVN6genome13gnBaseFeatureE@Base 1.3.11+svn20110227.4616 _ZTVN6genome14gnFragmentSpecE@Base 1.3.11+svn20110227.4616 _ZTVN6genome14gnSourceHeaderE@Base 1.3.11+svn20110227.4616 - _ZTVN6genome14gnStringHeaderE@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZTVN6genome14gnStringHeaderE@Base 1.3.11+svn20110227.4616 _ZTVN6genome16gnFastTranslatorE@Base 1.3.11+svn20110227.4616 _ZTVN6genome17gnSourceQualifierE@Base 1.3.11+svn20110227.4616 _ZTVN6genome17gnStringQualifierE@Base 1.3.11+svn20110227.4616 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:6: binary] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-25T18:37:26Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 40844 Build-Time: 26 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 4 Job: libgenome_1.3.11+svn20110227.4616-2 Machine Architecture: amd64 Package: libgenome Package-Time: 47 Source-Version: 1.3.11+svn20110227.4616-2 Space: 40844 Status: attempted Version: 1.3.11+svn20110227.4616-2 -------------------------------------------------------------------------------- Finished at 2020-02-25T18:37:26Z Build needed 00:00:47, 40844k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 48.022858953s