DC-Build-Header: libncl 2.1.21+git20190531.feceb81-2 / 2020-02-25 14:00:32 +0000 DC-Task: type:rebuild-binarch-only source:libncl version:2.1.21+git20190531.feceb81-2 chroot:unstable esttime:443 logfile:/tmp/libncl_2.1.21+git20190531.feceb81-2_unstable_clang9.log modes:clang9:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang9 libncl_2.1.21+git20190531.feceb81-2' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-13-114.eu-central-1.compute.internal +==============================================================================+ | libncl 2.1.21+git20190531.feceb81-2 (amd64) Tue, 25 Feb 2020 14:00:32 +0000 | +==============================================================================+ Package: libncl Version: 2.1.21+git20190531.feceb81-2 Source Version: 2.1.21+git20190531.feceb81-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2b0614c1-3f5a-479a-91b8-af97590f5f2c' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang9 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=9 + echo 'Install of clang-9' Install of clang-9 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:9 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:14 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB] Fetched 6604 kB in 2s (3554 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-9 libomp-9-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libgcc-9-dev libllvm9 libmpx2 libobjc-8-dev libobjc4 libomp5-9 libstdc++-8-dev libstdc++-9-dev libz3-4 Suggested packages: clang-9-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib libomp-9-doc libstdc++-8-doc libstdc++-9-doc Recommended packages: llvm-9-dev python3 The following NEW packages will be installed: clang-9 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libllvm9 libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-9-dev libomp5-9 libstdc++-8-dev libz3-4 The following packages will be upgraded: cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev 7 upgraded, 21 newly installed, 0 to remove and 2 not upgraded. Need to get 78.9 MB of archives. After this operation, 237 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp9 amd64 1:9.0.1-8 [8429 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B] Get:23 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-9-dev amd64 1:9.0.1-8 [3727 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 clang-9 amd64 1:9.0.1-8 [1156 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp5-9 amd64 1:9.0.1-8 [333 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libomp-9-dev amd64 1:9.0.1-8 [66.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.9 MB in 1s (96.4 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12119 files and directories currently installed.) Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ... Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ... Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ... 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Setting up clang-9 (1:9.0.1-8) ... Setting up g++-9 (9.2.1-30) ... Processing triggers for libc-bin (2.29-10) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-9 g++-4.6 + ln -s clang-9 gcc-4.6 + ln -s clang-9 cpp-4.6 + ln -s clang-9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-9 g++-4.7 + ln -s clang-9 gcc-4.7 + ln -s clang-9 cpp-4.7 + ln -s clang-9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-9 g++-4.8 + ln -s clang-9 gcc-4.8 + ln -s clang-9 cpp-4.8 + ln -s clang-9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-9 g++-4.9 + ln -s clang-9 gcc-4.9 + ln -s clang-9 cpp-4.9 + ln -s clang-9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-9 g++-5 + ln -s clang-9 gcc-5 + ln -s clang-9 cpp-5 + ln -s clang-9 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-9 g++-6 + ln -s clang-9 gcc-6 + ln -s clang-9 cpp-6 + ln -s clang-9 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-9 g++-7 + ln -s clang-9 gcc-7 + ln -s clang-9 cpp-7 + ln -s clang-9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-9 g++-8 + ln -s clang-9 gcc-8 + ln -s clang-9 cpp-8 + ln -s clang-9 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-9 g++-9 + ln -s clang-9 gcc-9 + ln -s clang-9 cpp-9 + ln -s clang-9 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-9 g++-10 + ln -s clang-9 gcc-10 + ln -s clang-9 cpp-10 + ln -s clang-9 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/libncl-ZtGFt4 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang9'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libncl-ZtGFt4/resolver-uAQSDm' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgmp10 zlib1g 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 343 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 343 kB in 0s (6563 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libncl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libncl.git Please use: git clone https://salsa.debian.org/med-team/libncl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 566 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main libncl 2.1.21+git20190531.feceb81-2 (dsc) [2186 B] Get:2 http://127.0.0.1:12990/debian sid/main libncl 2.1.21+git20190531.feceb81-2 (tar) [544 kB] Get:3 http://127.0.0.1:12990/debian sid/main libncl 2.1.21+git20190531.feceb81-2 (diff) [19.9 kB] Fetched 566 kB in 0s (7346 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libncl-ZtGFt4/libncl-2.1.21+git20190531.feceb81' with '<>' I: NOTICE: Log filtering will replace 'build/libncl-ZtGFt4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), d-shlibs, python3, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), d-shlibs, python3, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [382 B] Get:5 copy:/<>/apt_archive ./ Packages [466 B] Fetched 1805 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3.7 python3.7-minimal readline-common sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3.7 python3.7-minimal readline-common sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After this operation, 101 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [888 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libpython3.7-minimal amd64 3.7.6-1+b1 [591 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 python3.7-minimal amd64 3.7.6-1+b1 [1813 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 python3-minimal amd64 3.7.5-3 [36.8 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 mime-support all 3.64 [37.8 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 readline-common all 8.0-3 [72.5 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libreadline8 amd64 8.0-3 [160 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libsqlite3-0 amd64 3.31.1-3 [661 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libpython3.7-stdlib amd64 3.7.6-1+b1 [1735 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 python3.7 amd64 3.7.6-1+b1 [351 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libpython3-stdlib amd64 3.7.5-3 [20.2 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 python3 amd64 3.7.5-3 [62.1 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 d-shlibs all 0.88 [17.4 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.5 MB in 0s (91.4 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../0-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../5-libssl1.1_1.1.1d-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-2) ... 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-10) ... Setting up d-shlibs (0.88) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-3) ... Setting up libxml2:amd64 (2.9.10+dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libtool (2.4.6-13) ... Setting up libreadline8:amd64 (8.0-3) ... Setting up m4 (1.4.18-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.7-stdlib:amd64 (3.7.6-1+b1) ... Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3-stdlib:amd64 (3.7.5-3) ... Setting up python3.7 (3.7.6-1+b1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.5-3) ... Setting up debhelper (12.9) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-9_1:9.0.1-8 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 d-shlibs_0.88 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200222-1 libclang-common-9-dev_1:9.0.1-8 libclang-cpp9_1:9.0.1-8 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 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libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.10+dfsg-3 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 python3_3.7.5-3 python3-minimal_3.7.5-3 python3.7_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 readline-common_8.0-3 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libncl Binary: ncl-tools, libncl2, libncl-dev Architecture: any Version: 2.1.21+git20190531.feceb81-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/mtholder/ncl Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/libncl Vcs-Git: https://salsa.debian.org/med-team/libncl.git Build-Depends: debhelper-compat (= 12), d-shlibs, python3 Package-List: libncl-dev deb libdevel optional arch=any libncl2 deb libs optional arch=any ncl-tools deb science optional arch=any Checksums-Sha1: 79497c4e753de381268b623d538641578bd6dc56 543968 libncl_2.1.21+git20190531.feceb81.orig.tar.xz 3d4d5923414989f7c82b8b7662bcead771c732dd 19924 libncl_2.1.21+git20190531.feceb81-2.debian.tar.xz Checksums-Sha256: 6f55b5637e30781d6e1d557bdbc152d999c2f4f4d86b91a2238c3855791a648d 543968 libncl_2.1.21+git20190531.feceb81.orig.tar.xz 29d04e06c9d9312075cb6d3b12c1a4815f371ab87a625d45cea0b173c980a1fa 19924 libncl_2.1.21+git20190531.feceb81-2.debian.tar.xz Files: 6247cc411c82b6a76ebb6e9b4329301e 543968 libncl_2.1.21+git20190531.feceb81.orig.tar.xz 4963237a5ef19614729f0a2c5e75c720 19924 libncl_2.1.21+git20190531.feceb81-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl33n0kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGFYw//a5UfkEAkl/ep5my3DOew8WmxnnMthafq xQ7b4zsxab7KMuOX89Uj0F0FIVEfdqzT+6meqHAePBfdrqgwH8cSjch+kcG7RoWA Jz8qt0AgKhHA3WrE/HG3Z3p3kp81qnOG7XR2vfdQeNOJ7+SYoyGQ8D/ygM4T4kzr DHlX/ashzr2QYHvDf31upByGjMgTx1A71f/q8jhXTcT8K1cuN3W7O3yvuKIohr3m b26ybQKnT77jhoU40Lg7j+8lL2qCR5qG7dQ/CKmfx/PjN3A6u56++W8e+gSGJftX sQ9+NrGJgW6bMJhtvoQRjrzDmr2k/tyuysFoeU+h8ihHktonY5f+bk1nmCvNawrt 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info: using patch list from debian/patches/series dpkg-source: info: applying fix_rpath_issue.patch dpkg-source: info: applying set_soname_version.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-2b0614c1-3f5a-479a-91b8-af97590f5f2c SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package libncl dpkg-buildpackage: info: source version 2.1.21+git20190531.feceb81-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find . -name ".roundTripNCL*" -delete make[1]: Leaving directory '/<>' debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' configure.ac:28: installing 'config/compile' configure.ac:21: installing 'config/missing' example/basiccmdline/Makefile.am: installing 'config/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-constfuncs=yes ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1001' is supported by ustar format... yes checking whether GID '1001' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... yes checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether C++ compiler works... yes checking for ANSI C header files... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for stdlib.h... (cached) yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for an ANSI C-conforming const... yes checking for inline... inline checking whether struct tm is in sys/time.h or time.h... time.h checking whether time.h and sys/time.h may both be included... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for alarm... yes checking for working mktime... yes checking for working strtod... yes checking for memmove... yes checking for strchr... yes checking for strtol... yes checking for python3... /usr/bin/python3 checking python3 module: subprocess... yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating example/Makefile config.status: creating example/basiccmdline/Makefile config.status: creating example/check-taxo-nodes/Makefile config.status: creating example/compressor/Makefile config.status: creating example/find-unsupported-edges/Makefile config.status: creating example/gapcode/Makefile config.status: creating example/ot-subtree/Makefile config.status: creating example/ot-tree-inspect/Makefile config.status: creating example/nclsimplest/Makefile config.status: creating example/ncltest/Makefile config.status: creating example/normalizer/Makefile config.status: creating example/patristic/Makefile config.status: creating example/phylobaseinterface/Makefile config.status: creating example/polytomy-count/Makefile config.status: creating example/outdeg1count/Makefile config.status: creating example/splitsinfile/Makefile config.status: creating example/subsetter/Makefile config.status: creating example/translate/Makefile config.status: creating ncl/Makefile config.status: creating test/Makefile config.status: creating nclv2.1.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' dh_auto_build make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in ncl make[3]: Entering directory '/<>/ncl' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o nxsassumptionsblock.lo nxsassumptionsblock.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. 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.libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/outdeg1count' Making all in patristic make[4]: Entering directory '/<>/example/patristic' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o patristic.o patristic.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/patristic' Making all in phylobaseinterface make[4]: Entering directory '/<>/example/phylobaseinterface' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/phylobaseinterface' Making all in polytomy-count make[4]: Entering directory '/<>/example/polytomy-count' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/polytomy-count' Making all in splitsinfile make[4]: Entering directory '/<>/example/splitsinfile' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/splitsinfile' Making all in subsetter make[4]: Entering directory '/<>/example/subsetter' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/subsetter' Making all in translate make[4]: Entering directory '/<>/example/translate' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -ffast-math -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so make[4]: Leaving directory '/<>/example/translate' make[4]: Entering directory '/<>/example' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/example' make[3]: Leaving directory '/<>/example' Making all in test make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/test' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in ncl make[2]: Entering directory '/<>/ncl' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/ncl' Making check in example make[2]: Entering directory '/<>/example' Making check in basiccmdline make[3]: Entering directory '/<>/example/basiccmdline' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/basiccmdline' Making check in check-taxo-nodes make[3]: Entering directory '/<>/example/check-taxo-nodes' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/check-taxo-nodes' Making check in compressor make[3]: Entering directory '/<>/example/compressor' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/compressor' Making check in find-unsupported-edges make[3]: Entering directory '/<>/example/find-unsupported-edges' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/find-unsupported-edges' Making check in gapcode make[3]: Entering directory '/<>/example/gapcode' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/gapcode' Making check in nclsimplest make[3]: Entering directory '/<>/example/nclsimplest' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/nclsimplest' Making check in ncltest make[3]: Entering directory '/<>/example/ncltest' make check-local make[4]: Entering directory '/<>/example/ncltest' /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS [Reading -s2 ] [Reading -s2 ] storing read block: TAXA storing implied block: TAXA storing read block: DATA "/<>/example/ncltest/ncltest" "-s2" "/<>/test/OldValidIn/m.nex" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/ncltest/ncltest succeeded for /<>/test/OldValidIn/m.nex "/<>/example/ncltest/ncltest" "-s2" "/<>/test/OldValidOut/m.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/ncltest/ncltest succeeded for /<>/test/OldValidOut/m.nex make[4]: Leaving directory '/<>/example/ncltest' make[3]: Leaving directory '/<>/example/ncltest' Making check in normalizer make[3]: Entering directory '/<>/example/normalizer' make check-local make[4]: Entering directory '/<>/example/normalizer' /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data [Reading /<>/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS [Reading /<>/test/data/characters.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/data/characters.nex" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/data/characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/data/characters.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/data/characters.nex /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data [Reading /<>/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES [Reading /<>/test/data/sample.tre ] Executing storing read block: PAUP storing read block: TAXA storing read block: TREES "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/data/sample.tre" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/data/sample.tre "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/data/sample.tre" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/data/sample.tre /usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut [Reading /<>/test/NTSValidIn/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED [Reading /<>/test/NTSValidOut/unaligned.nex ] Executing storing read block: TAXA storing read block: UNALIGNED [Reading /<>/test/NTSValidIn/characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS [Reading /<>/test/NTSValidOut/characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS storing read block: CHARACTERS [Reading /<>/test/NTSValidIn/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidOut/basic-bush-mixed-line-endings.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidIn/kim.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/NTSValidOut/kim.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES [Reading /<>/test/NTSValidIn/mdata.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS [Reading /<>/test/NTSValidOut/mdata.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS [Reading /<>/test/NTSValidIn/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 1014) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 1053) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE [Reading /<>/test/NTSValidOut/nhxtree.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE [Reading /<>/test/NTSValidIn/dzmissing_bug.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: ASSUMPTIONS storing read block: MACCLADE [Reading /<>/test/NTSValidOut/dzmissing_bug.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS storing read block: MACCLADE [Reading /<>/test/NTSValidIn/replicase.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/NTSValidOut/replicase.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES [Reading /<>/test/NTSValidIn/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidOut/t.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidIn/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS Warning: An * is ignored in a CHARSET command at line 67, column (approximately) 46 (file position 929) Warning: An * is ignored in a CHARSET command at line 68, column (approximately) 42 (file position 968) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/unaligned.nex" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/unaligned.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/unaligned.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/unaligned.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/characters.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/characters.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-mixed-line-endings.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-mixed-line-endings.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-mixed-line-endings.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-mixed-line-endings.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/kim.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/kim.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/kim.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/kim.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/mdata.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/mdata.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/mdata.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/mdata.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/nhxtree.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/nhxtree.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/nhxtree.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/nhxtree.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/dzmissing_bug.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/dzmissing_bug.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/dzmissing_bug.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/dzmissing_bug.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/replicase.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/replicase.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/replicase.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/replicase.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/t.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/t.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/t.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/t.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-rake.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-rake.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-rake.nex" [Reading /<>/test/NTSValidOut/basic-rake.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: CODONS storing read block: SETS storing read block: ASSUMPTIONS storing read block: MESQUITECHARMODELS storing read block: MESQUITE [Reading /<>/test/NTSValidIn/adh.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/NTSValidOut/adh.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES [Reading /<>/test/NTSValidIn/notaxablock-quotes.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 7 (file position 26) storing implied block: TAXA storing read block: TREES [Reading /<>/test/NTSValidOut/notaxablock-quotes.nex ] Executing storing read block: TAXA storing read block: TREES [Reading /<>/test/NTSValidIn/linktest.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 189) storing read block: TAXA Warning: Skipping command: blockid at line 27, column (approximately) 11 (file position 388) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS Warning: Skipping unknown LINK subcommand: characters at line 61, column (approximately) 38 (file position 1551) storing read block: TREES Warning: Skipping unknown LINK subcommand: characters at line 71, column (approximately) 38 (file position 1745) storing read block: TREES storing implied block: ASSUMPTIONS storing implied block: ASSUMPTIONS storing read block: ASSUMPTIONS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 90, column (approximately) 42 (file position 2360) storing read block: ASSUMPTIONS storing read block: ASSUMPTIONS [Reading /<>/test/NTSValidOut/linktest.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 168) storing read block: TAXA Warning: Skipping command: blockid at line 12, column (approximately) 13 (file position 341) storing read block: TAXA storing read block: CHARACTERS storing read block: CHARACTERS storing read block: TREES storing read block: TREES storing read block: SETS storing read block: SETS storing read block: SETS Warning: A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s). at line 84, column (approximately) 20 (file position 2384) storing read block: SETS storing read block: SETS [Reading /<>/test/NTSValidIn/primates.nex ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/NTSValidOut/primates.nex ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/NTSValidIn/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidOut/basic-bush-dos.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidIn/cynmix.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES storing read block: MRBAYES [Reading /<>/test/NTSValidOut/cynmix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES storing read block: MRBAYES [Reading /<>/test/NTSValidIn/treeswithouttaxa.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 10 (file position 26) storing implied block: TAXA storing read block: TREES [Reading /<>/test/NTSValidOut/treeswithouttaxa.nex ] Executing storing read block: TAXA storing read block: TREES [Reading /<>/test/NTSValidIn/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/NTSValidOut/protein.nex ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/NTSValidIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/NTSValidOut/bglobin.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES [Reading /<>/test/NTSValidIn/partitions.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-rake.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/adh.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/adh.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/adh.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/adh.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/notaxablock-quotes.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/notaxablock-quotes.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/notaxablock-quotes.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/notaxablock-quotes.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/linktest.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/linktest.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/linktest.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/linktest.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/primates.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/primates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/primates.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/primates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-dos.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-dos.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-dos.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-dos.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/cynmix.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/cynmix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/cynmix.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/cynmix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/treeswithouttaxa.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/treeswithouttaxa.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/treeswithouttaxa.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/treeswithouttaxa.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/protein.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/protein.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/protein.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/protein.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/bglobin.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/bglobin.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/bglobin.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/bglobin.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/partitions.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/partitions.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/partitions.nex" [Reading /<>/test/NTSValidOut/partitions.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: TREES storing read block: SETS storing read block: ASSUMPTIONS [Reading /<>/test/NTSValidIn/charsets.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS [Reading /<>/test/NTSValidOut/charsets.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 183) storing read block: TAXA storing read block: CHARACTERS storing read block: SETS storing read block: ASSUMPTIONS [Reading /<>/test/NTSValidIn/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES [Reading /<>/test/NTSValidOut/distances.nex ] Executing storing read block: TAXA storing read block: DISTANCES [Reading /<>/test/NTSValidIn/anolis.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/NTSValidOut/anolis.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES [Reading /<>/test/NTSValidIn/avian_ovomucoids.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/NTSValidOut/avian_ovomucoids.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: MRBAYES [Reading /<>/test/NTSValidIn/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidOut/basic-bush-mac.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidIn/notaxablock.nex ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 3, column (approximately) 13 (file position 32) storing implied block: TAXA storing read block: TREES [Reading /<>/test/NTSValidOut/notaxablock.nex ] Executing storing read block: TAXA storing read block: TREES [Reading /<>/test/NTSValidIn/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION [Reading /<>/test/NTSValidOut/associates.nex ] Executing storing read block: TAXA storing read block: TAXA storing read block: TAXAASSOCIATION [Reading /<>/test/NTSValidIn/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidOut/basic-bush-unix.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: TREES [Reading /<>/test/NTSValidIn/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 13, column (approximately) 11 (file position 176) storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/NTSValidOut/paup_characters.nex ] Executing Warning: Skipping command: blockid at line 6, column (approximately) 13 (file position 188) storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/NTSValidIn/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: ASSUMPTIONS ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/partitions.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/charsets.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/charsets.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/charsets.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/charsets.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/distances.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/distances.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/distances.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/distances.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/anolis.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/anolis.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/anolis.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/anolis.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/avian_ovomucoids.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/avian_ovomucoids.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/avian_ovomucoids.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/avian_ovomucoids.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-mac.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-mac.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-mac.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-mac.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/notaxablock.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/notaxablock.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/notaxablock.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/notaxablock.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/associates.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/associates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/associates.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/associates.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/basic-bush-unix.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/basic-bush-unix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/basic-bush-unix.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/basic-bush-unix.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/paup_characters.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/paup_characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/paup_characters.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/paup_characters.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/m.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/m.nex[Reading /<>/test/NTSValidOut/m.nex ] Executing storing read block: TAXA storing read block: CHARACTERS storing read block: SETS [Reading /<>/test/NTSValidIn/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES [Reading /<>/test/NTSValidOut/parens_intree.tre ] Executing storing read block: TAXA storing read block: TREES "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/m.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/m.nex "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidIn/parens_intree.tre" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidIn/parens_intree.tre "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/NTSValidOut/parens_intree.tre" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/NTSValidOut/parens_intree.tre /usr/bin/python3 ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut [Reading /<>/test/funkyValidIn/choke.tre ] Executing Warning: A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block. at line 5, column (approximately) 6 (file position 74) storing implied block: TAXA storing read block: TREES [Reading /<>/test/funkyValidOut/choke.tre ] Executing storing read block: TAXA storing read block: TREES "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/test/funkyValidIn/choke.tre" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/funkyValidIn/choke.tre "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/<>/test/funkyValidOut/choke.tre" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/funkyValidOut/choke.tre /usr/bin/python3 ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut [Reading /<>/test/ExternalValidIn/aaphylip_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/aaphylip_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/ExternalValidIn/relaxedphyliptree_q.phy ] Executing storing implied block: TAXA storing read block: TREES [Reading /<>/test/ExternalValidOut/relaxedphyliptree_q.phy ] Executing storing read block: TAXA storing read block: TREES [Reading /<>/test/ExternalValidIn/dnarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/dnarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/ExternalValidIn/dnarelaxedphylip_brana.phy ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/dnarelaxedphylip_brana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/ExternalValidIn/phyliptree_simple.phy ] Executing storing implied block: TAXA storing read block: TREES [Reading /<>/test/ExternalValidOut/phyliptree_simple.phy ] Executing storing read block: TAXA storing read block: TREES [Reading /<>/test/ExternalValidIn/aarelaxedphylip_rana.phy ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/aarelaxedphylip_rana.phy ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/ExternalValidIn/aafasta_twoprot.fas ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/aafasta_twoprot.fas ] Executing storing read block: TAXA storing read block: CHARACTERS [Reading /<>/test/ExternalValidIn/aaaln_twoprot_undec.aln ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/aaaln_twoprot_undec.aln ] Executing storing read block: TAXA storing read block: CHARACTERS "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/<>/test/ExternalValidIn/aaphylip_emboss.phy" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaphylip_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaphylip_emboss.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaphylip_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/<>/test/ExternalValidIn/relaxedphyliptree_q.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/relaxedphyliptree_q.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/relaxedphyliptree_q.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/relaxedphyliptree_q.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/test/ExternalValidIn/dnarelaxedphylip_rana.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/dnarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/dnarelaxedphylip_rana.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/dnarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/<>/test/ExternalValidIn/aaphylipinterleaved_emboss.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaphylipinterleaved_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaphylipinterleaved_emboss.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaphylipinterleaved_emboss.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/test/ExternalValidIn/dnarelaxedphylip_brana.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/dnarelaxedphylip_brana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/dnarelaxedphylip_brana.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/dnarelaxedphylip_brana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/<>/test/ExternalValidIn/phyliptree_simple.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/phyliptree_simple.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/phyliptree_simple.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/phyliptree_simple.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/test/ExternalValidIn/aarelaxedphylip_rana.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aarelaxedphylip_rana.phy" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aarelaxedphylip_rana.phy "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/<>/test/ExternalValidIn/aafasta_twoprot.fas" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aafasta_twoprot.fas "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aafasta_twoprot.fas" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aafasta_twoprot.fas "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/test/ExternalValidIn/aaaln_twoprot_undec.aln" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaaln_twoprot_undec.aln "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaaln_twoprot_undec.aln" ../../test/roundTripNCLTest.py : Call to[Reading /<>/test/ExternalValidIn/aaaln_twoprot.aln ] Executing storing implied block: TAXA storing read block: DATA [Reading /<>/test/ExternalValidOut/aaaln_twoprot.aln ] Executing storing read block: TAXA storing read block: CHARACTERS /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaaln_twoprot_undec.aln "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/<>/test/ExternalValidIn/aaaln_twoprot.aln" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidIn/aaaln_twoprot.aln "/<>/example/normalizer/NEXUSnormalizer" "-s2" "/<>/test/ExternalValidOut/aaaln_twoprot.aln" ../../test/roundTripNCLTest.py : Call to /<>/example/normalizer/NEXUSnormalizer succeeded for /<>/test/ExternalValidOut/aaaln_twoprot.aln /usr/bin/python3 ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn [Reading /<>/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ] Executing Error: Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945 at line 12, column (approximately) 28 (and file position 20065) [Reading /<>/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ] Executing Error: Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short. at line 3, column (approximately) 2 (and file position 2011) "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/<>/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy" "/<>/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/<>/test/ExternalInvalidIn/aarelaxedphylip_rana.phy" /usr/bin/python3 ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer /sbuild-nonexistent/.ncl_round_triprc does not exist. Test stepped skipped. make[4]: Leaving directory '/<>/example/normalizer' make[3]: Leaving directory '/<>/example/normalizer' Making check in ot-subtree make[3]: Entering directory '/<>/example/ot-subtree' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/ot-subtree' Making check in ot-tree-inspect make[3]: Entering directory '/<>/example/ot-tree-inspect' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/ot-tree-inspect' Making check in outdeg1count make[3]: Entering directory '/<>/example/outdeg1count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/outdeg1count' Making check in patristic make[3]: Entering directory '/<>/example/patristic' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/patristic' Making check in phylobaseinterface make[3]: Entering directory '/<>/example/phylobaseinterface' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/phylobaseinterface' Making check in polytomy-count make[3]: Entering directory '/<>/example/polytomy-count' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/polytomy-count' Making check in splitsinfile make[3]: Entering directory '/<>/example/splitsinfile' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/splitsinfile' Making check in subsetter make[3]: Entering directory '/<>/example/subsetter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/example/subsetter' Making check in translate make[3]: Entering directory '/<>/example/translate' make check-local make[4]: Entering directory '/<>/example/translate' /usr/bin/python3 ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut [Reading /<>/test/TranslateIn/bglobin.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: MRBAYES [Reading /<>/test/TranslateIn/bglobinoof.nex ] Executing storing implied block: TAXA storing read block: DATA storing read block: CODONS "/<>/example/translate/NEXUStranslate" "-s2" "/<>/test/TranslateIn/bglobin.nex" ../../test/roundTripNCLTest.py:106: DeprecationWarning: 'U' mode is deprecated e = open(expectedOut, "rU") ../../test/roundTripNCLTest.py:107: DeprecationWarning: 'U' mode is deprecated o = open(tf, "rU") ../../test/roundTripNCLTest.py : Call to /<>/example/translate/NEXUStranslate succeeded for /<>/test/TranslateIn/bglobin.nex "/<>/example/translate/NEXUStranslate" "-s2" "/<>/test/TranslateIn/bglobinoof.nex" ../../test/roundTripNCLTest.py : Call to /<>/example/translate/NEXUStranslate succeeded for /<>/test/TranslateIn/bglobinoof.nex make[4]: Leaving directory '/<>/example/translate' make[3]: Leaving directory '/<>/example/translate' make[3]: Entering directory '/<>/example' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/example' make[2]: Leaving directory '/<>/example' Making check in test make[2]: Entering directory '/<>/test' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/test' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/<>/libncl-2.1.21\+git20190531.feceb81/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in ncl make[2]: Entering directory '/<>/ncl' make[3]: Entering directory '/<>/ncl' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libncl.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; }) libtool: install: /usr/bin/install -c .libs/libncl.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la libtool: install: /usr/bin/install -c .libs/libncl.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/ncl' /usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/<>/debian/tmp/usr/include/ncl' make[3]: Leaving directory '/<>/ncl' make[2]: Leaving directory '/<>/ncl' Making install in example make[2]: Entering directory '/<>/example' Making install in basiccmdline make[3]: Entering directory '/<>/example/basiccmdline' make[4]: Entering directory '/<>/example/basiccmdline' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/basiccmdline' make[3]: Leaving directory '/<>/example/basiccmdline' Making install in check-taxo-nodes make[3]: Entering directory '/<>/example/check-taxo-nodes' make[4]: Entering directory '/<>/example/check-taxo-nodes' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/checktaxonnodes /<>/debian/tmp/usr/bin/checktaxonnodes make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/check-taxo-nodes' make[3]: Leaving directory '/<>/example/check-taxo-nodes' Making install in compressor make[3]: Entering directory '/<>/example/compressor' make[4]: Entering directory '/<>/example/compressor' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/compressor' make[3]: Leaving directory '/<>/example/compressor' Making install in find-unsupported-edges make[3]: Entering directory '/<>/example/find-unsupported-edges' make[4]: Entering directory '/<>/example/find-unsupported-edges' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/findunsupportededges /<>/debian/tmp/usr/bin/findunsupportededges make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/find-unsupported-edges' make[3]: Leaving directory '/<>/example/find-unsupported-edges' Making install in gapcode make[3]: Entering directory '/<>/example/gapcode' make[4]: Entering directory '/<>/example/gapcode' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/gapcode' make[3]: Leaving directory '/<>/example/gapcode' Making install in nclsimplest make[3]: Entering directory '/<>/example/nclsimplest' make[4]: Entering directory '/<>/example/nclsimplest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/nclsimplest' make[3]: Leaving directory '/<>/example/nclsimplest' Making install in ncltest make[3]: Entering directory '/<>/example/ncltest' make[4]: Entering directory '/<>/example/ncltest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/ncltest' make[3]: Leaving directory '/<>/example/ncltest' Making install in normalizer make[3]: Entering directory '/<>/example/normalizer' make[4]: Entering directory '/<>/example/normalizer' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /<>/debian/tmp/usr/bin/NEXUSnormalizer libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /<>/debian/tmp/usr/bin/NEXUSvalidator libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/NCLconverter /<>/debian/tmp/usr/bin/NCLconverter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/normalizer' make[3]: Leaving directory '/<>/example/normalizer' Making install in ot-subtree make[3]: Entering directory '/<>/example/ot-subtree' make[4]: Entering directory '/<>/example/ot-subtree' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otsubtree '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/otsubtree /<>/debian/tmp/usr/bin/otsubtree make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/ot-subtree' make[3]: Leaving directory '/<>/example/ot-subtree' Making install in ot-tree-inspect make[3]: Entering directory '/<>/example/ot-tree-inspect' make[4]: Entering directory '/<>/example/ot-tree-inspect' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/otTreeInspect /<>/debian/tmp/usr/bin/otTreeInspect make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/ot-tree-inspect' make[3]: Leaving directory '/<>/example/ot-tree-inspect' Making install in outdeg1count make[3]: Entering directory '/<>/example/outdeg1count' make[4]: Entering directory '/<>/example/outdeg1count' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c outdeg1count '/<>/debian/tmp/usr/bin' libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/outdeg1count /<>/debian/tmp/usr/bin/outdeg1count make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/outdeg1count' make[3]: Leaving directory '/<>/example/outdeg1count' Making install in patristic make[3]: Entering directory '/<>/example/patristic' make[4]: Entering directory '/<>/example/patristic' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/patristic' make[3]: Leaving directory '/<>/example/patristic' Making install in phylobaseinterface make[3]: Entering directory '/<>/example/phylobaseinterface' make[4]: Entering directory '/<>/example/phylobaseinterface' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/phylobaseinterface' make[3]: Leaving directory '/<>/example/phylobaseinterface' Making install in polytomy-count make[3]: Entering directory '/<>/example/polytomy-count' make[4]: Entering directory '/<>/example/polytomy-count' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/polytomy-count' make[3]: Leaving directory '/<>/example/polytomy-count' Making install in splitsinfile make[3]: Entering directory '/<>/example/splitsinfile' make[4]: Entering directory '/<>/example/splitsinfile' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/splitsinfile' make[3]: Leaving directory '/<>/example/splitsinfile' Making install in subsetter make[3]: Entering directory '/<>/example/subsetter' make[4]: Entering directory '/<>/example/subsetter' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/subsetter' make[3]: Leaving directory '/<>/example/subsetter' Making install in translate make[3]: Entering directory '/<>/example/translate' make[4]: Entering directory '/<>/example/translate' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example/translate' make[3]: Leaving directory '/<>/example/translate' make[3]: Entering directory '/<>/example' make[4]: Entering directory '/<>/example' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/example' make[3]: Leaving directory '/<>/example' make[2]: Leaving directory '/<>/example' Making install in test make[2]: Entering directory '/<>/test' make[3]: Entering directory '/<>/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/test' make[2]: Leaving directory '/<>/test' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 nclv2.1.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libncl.so Library package automatic movement utility set -e install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libncl2/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a debian/libncl-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la debian/libncl-dev/usr/lib/x86_64-linux-gnu || true mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so debian/libncl-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2 debian/libncl2/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 debian/libncl2/usr/lib/x86_64-linux-gnu PKGDEV=libncl-dev PKGSHL=libncl2 install -d -m 755 debian/libncl-dev/usr/include/ncl mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libncl-dev/usr/lib/x86_64-linux-gnu/pkgconfig rm -f debian/tmp/usr/include/ncl/nxsblock.cpp make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libncl2/DEBIAN/symbols doesn't match completely debian/libncl2.symbols.amd64 --- debian/libncl2.symbols.amd64 (libncl2_2.1.21+git20190531.feceb81-2_amd64) +++ dpkg-gensymbolsRBcX0n 2020-02-25 14:03:10.463029470 +0000 @@ -1,6 +1,6 @@ libncl.so.2 libncl2 #MINVER# _Z10fileExistsRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 - _Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18 _Z15parseNHXCommentNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3mapIS4_S4_St4lessIS4_ESaISt4pairIKS4_S4_EEE@Base 2.1.18 _Z16disambiguateNameRKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessIS5_ESaISt4pairIKS5_jEEERKSt3setIjS6_IjESaIjEER9NxsStringPKcb@Base 2.1.21+git20171002.4becff7 _Z18NxsWriteSetCommandPKcRKSt3mapI9NxsStringSt3setIjSt4lessIjESaIjEES4_IS2_ESaISt4pairIKS2_S7_EEERSoS0_@Base 2.1.18 @@ -29,8 +29,8 @@ _ZN12NxsDataBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN12NxsDataBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN12NxsDataBlockD0Ev@Base 2.1.18 - _ZN12NxsDataBlockD1Ev@Base 2.1.18 - _ZN12NxsDataBlockD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN12NxsDataBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN12NxsDataBlockD2Ev@Base 2.1.18 _ZN12NxsException15addPositionInfoERK15NxsTokenPosInfo@Base 2.1.18 _ZN12NxsException15addPositionInfoERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsException15addPositionInfoERK8NxsToken@Base 2.1.18 @@ -39,14 +39,14 @@ _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 _ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18 - _ZN12NxsExceptionC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN12NxsExceptionC1ERKS_@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK15NxsTokenPosInfo@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18 _ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18 - _ZN12NxsExceptionC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN12NxsExceptionC2ERKS_@Base 2.1.18 _ZN12NxsExceptionD0Ev@Base 2.1.18 - _ZN12NxsExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN12NxsExceptionD1Ev@Base 2.1.18 _ZN12NxsExceptionD2Ev@Base 2.1.18 _ZN12NxsSetReader13AddRangeToSetEjjjPSt3setIjSt4lessIjESaIjEEPKS4_R8NxsToken@Base 2.1.18 _ZN12NxsSetReader13GetTokenValueEv@Base 2.1.18 @@ -86,9 +86,10 @@ _ZN13NxsSimpleTree12AllocNewNodeEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree12RerootAtNodeEP13NxsSimpleNode@Base 2.1.18 _ZN13NxsSimpleTree20FlipRootsChildToRootEP13NxsSimpleNode@Base 2.1.18 + _ZN13NxsSimpleTree5ClearEv@Base 2.1.21+git20190531.feceb81-2 _ZN13NxsSimpleTree8RerootAtEj@Base 2.1.18 - _ZN13NxsSimpleTreeD1Ev@Base 2.1.18 - _ZN13NxsSimpleTreeD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN13NxsSimpleTreeD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN13NxsSimpleTreeD2Ev@Base 2.1.18 _ZN13NxsTreesBlock11GetNumTreesEv@Base 2.1.18 _ZN13NxsTreesBlock11GetTreeNameEj@Base 2.1.18 _ZN13NxsTreesBlock12IsRootedTreeEj@Base 2.1.18 @@ -120,19 +121,23 @@ _ZN13NxsTreesBlockD2Ev@Base 2.1.18 _ZN15NxsBlockFactory10BlockErrorEP8NxsBlock@Base 2.1.18 _ZN15NxsBlockFactory12BlockSkippedEP8NxsBlock@Base 2.1.18 + _ZN15NxsBlockFactoryD2Ev@Base 2.1.21+git20190531.feceb81-2 _ZN15NxsCodonTripletC1EPKc@Base 2.1.18 _ZN15NxsCodonTripletC2EPKc@Base 2.1.18 + _ZN15NxsTaxaBlockAPID0Ev@Base 2.1.21+git20190531.feceb81-2 + _ZN15NxsTaxaBlockAPID2Ev@Base 2.1.21+git20190531.feceb81-2 _ZN16BogusToIndMapper14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN16BogusToIndMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN16BogusToIndMapper15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZN16BogusToIndMapperD0Ev@Base 2.1.18 - _ZN16BogusToIndMapperD1Ev@Base 2.1.18 - _ZN16BogusToIndMapperD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN16BogusToIndMapperD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN16BogusToIndMapperD2Ev@Base 2.1.18 _ZN16FileToCharBuffer12refillBufferEm@Base 2.1.21+git20171002.4becff7 _ZN16FileToCharBuffer25skip_to_beginning_of_lineERc@Base 2.1.18 _ZN16FileToCharBuffer7advanceEv@Base 2.1.18 _ZN16FileToCharBufferC1ERSi@Base 2.1.18 _ZN16FileToCharBufferC2ERSi@Base 2.1.18 + _ZN16NxsIntStepMatrixC2ERKS_@Base 2.1.21+git20190531.feceb81-2 _ZN17MultiFormatReader10ReadStreamERSiNS_14DataFormatTypeEPKc@Base 2.1.18 _ZN17MultiFormatReader10ReadStreamERSiPKc@Base 2.1.18 _ZN17MultiFormatReader11readAlnDataER16FileToCharBufferRK25NxsDiscreteDatatypeMapperRNSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEERNS6_ISt6vectorIiSaIiEESaISH_EEE@Base 2.1.18 @@ -174,6 +179,7 @@ _ZN17NxsDistancesBlockD0Ev@Base 2.1.18 _ZN17NxsDistancesBlockD1Ev@Base 2.1.18 _ZN17NxsDistancesBlockD2Ev@Base 2.1.18 + _ZN17NxsRealStepMatrixC2ERKS_@Base 2.1.21+git20190531.feceb81-2 _ZN17NxsUnalignedBlock11IsInSymbolsEc@Base 2.1.18 _ZN17NxsUnalignedBlock12GetNumStatesEjj@Base 2.1.18 _ZN17NxsUnalignedBlock12HandleFormatER8NxsToken@Base 2.1.18 @@ -201,12 +207,15 @@ _ZN17NxsUnalignedBlockD2Ev@Base 2.1.18 _ZN17ProcessedNxsToken14ParseSimpleCmdERKSt6vectorIS_SaIS_EEb@Base 2.1.18 _ZN17ProcessedNxsToken16IncrementNotLastERN9__gnu_cxx17__normal_iteratorIPKS_St6vectorIS_SaIS_EEEERKS7_PKc@Base 2.1.18 - _ZN17ProcessedNxsTokenD1Ev@Base 2.1.18 - _ZN17ProcessedNxsTokenD2Ev@Base 2.1.18 + _ZN17ProcessedNxsTokenC2ERK8NxsToken@Base 2.1.21+git20190531.feceb81-2 + _ZN17ProcessedNxsTokenC2ERKS_@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN17ProcessedNxsTokenD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN17ProcessedNxsTokenD2Ev@Base 2.1.18 _ZN17PublicNexusReader10AddFactoryEP15NxsBlockFactory@Base 2.1.18 _ZN17PublicNexusReader12ClearContentEv@Base 2.1.18 _ZN17PublicNexusReader12RegisterTaxaERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EE@Base 2.1.18 _ZN17PublicNexusReader15PostExecuteHookEv@Base 2.1.18 + _ZN17PublicNexusReader16AddReadTaxaBlockEP12NxsTaxaBlock@Base 2.1.21+git20190531.feceb81-2 _ZN17PublicNexusReader16parseFileOrThrowB5cxx11EPKcN9NxsReader19WarningHandlingModeEbb@Base 2.1.18 _ZN17PublicNexusReader18ClearUsedBlockListEv@Base 2.1.18 _ZN17PublicNexusReader25DeleteBlocksFromFactoriesEv@Base 2.1.18 @@ -254,7 +263,7 @@ _ZN18NxsCharactersBlock26CodonPosPartitionToPosListERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEEPNS1_IiSaIiEEE@Base 2.1.18 _ZN18NxsCharactersBlock27CreateDatatypeMapperObjectsERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEERKSt6vectorINS_13DataTypesEnumESaISJ_EE@Base 2.1.18 _ZN18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18 - _ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18 _ZN18NxsCharactersBlock4ReadER8NxsToken@Base 2.1.18 _ZN18NxsCharactersBlock5ResetEv@Base 2.1.18 _ZN18NxsCharactersBlock7ConsumeERS_@Base 2.1.18 @@ -262,18 +271,18 @@ _ZN18NxsCharactersBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN18NxsCharactersBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18 _ZN18NxsCharactersBlockD0Ev@Base 2.1.18 - _ZN18NxsCharactersBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN18NxsCharactersBlockD1Ev@Base 2.1.18 _ZN18NxsCharactersBlockD2Ev@Base 2.1.18 _ZN18NxsNCLAPIExceptionD0Ev@Base 2.1.18 - _ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18 - _ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18 _ZN18NxsX_UnexpectedEOFC1ER8NxsToken@Base 2.1.18 _ZN18NxsX_UnexpectedEOFC2ER8NxsToken@Base 2.1.18 _ZN18NxsX_UnexpectedEOFD0Ev@Base 2.1.18 - _ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18 - _ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18 - _ZN19CodonRecodingStructD1Ev@Base 2.1.18 - _ZN19CodonRecodingStructD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN19CodonRecodingStructD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN19CodonRecodingStructD2Ev@Base 2.1.18 _ZN19NxsAssumptionsBlock10AddCodeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN19NxsAssumptionsBlock10ApplyExsetE9NxsString@Base 2.1.18 _ZN19NxsAssumptionsBlock11HandleExSetER8NxsToken@Base 2.1.18 @@ -345,25 +354,26 @@ _ZN19NxsAssumptionsBlockD2Ev@Base 2.1.18 _ZN19NxsDataBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN19NxsDataBlockFactoryD0Ev@Base 2.1.18 - _ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18 - _ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18 _ZN19NxsTaxaBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN19NxsTaxaBlockFactoryD0Ev@Base 2.1.18 - _ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18 - _ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18 _ZN20NxsCXXDiscreteMatrix10InitializeEPK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC1ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC1ERK24NxsCDiscreteMatrixStruct@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC2ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18 _ZN20NxsCXXDiscreteMatrixC2ERK24NxsCDiscreteMatrixStruct@Base 2.1.18 + _ZN20NxsCloneBlockFactory12AddPrototypeEPK8NxsBlockPKc@Base 2.1.21+git20190531.feceb81-2 _ZN20NxsCloneBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN20NxsCloneBlockFactoryD0Ev@Base 2.1.18 - _ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18 _ZN20NxsCloneBlockFactoryD2Ev@Base 2.1.18 _ZN20NxsTreesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN20NxsTreesBlockFactoryD0Ev@Base 2.1.18 - _ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18 - _ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate13ActivateTaxonEj@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 @@ -377,16 +387,21 @@ _ZN21NxsTaxaBlockSurrogate21HandleLinkTaxaCommandER8NxsToken@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate30CopyTaxaBlockSurrogateContentsERKS_@Base 2.1.18 _ZN21NxsTaxaBlockSurrogate32SurrogateSwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 - _ZN22NxsFullTreeDescriptionD1Ev@Base 2.1.18 - _ZN22NxsFullTreeDescriptionD2Ev@Base 2.1.18 + _ZN21NxsTaxaBlockSurrogateD0Ev@Base 2.1.21+git20190531.feceb81-2 + _ZN21NxsTaxaBlockSurrogateD2Ev@Base 2.1.21+git20190531.feceb81-2 + _ZN22NxsFullTreeDescriptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_i@Base 2.1.21+git20190531.feceb81-2 + _ZN22NxsFullTreeDescriptionC2ERKS_@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN22NxsFullTreeDescriptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN22NxsFullTreeDescriptionD2Ev@Base 2.1.18 _ZN22NxsGeneticCodesManagerC1Ev@Base 2.1.18 _ZN22NxsGeneticCodesManagerC2Ev@Base 2.1.18 _ZN23NxsLabelToIndicesMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper18GetIndicesFromSetsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper25allowNumberAsIndexPlusOneE@Base 2.1.18 _ZN23NxsLabelToIndicesMapper27GetIndicesFromSetOrAsNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEEjPKc@Base 2.1.18 - _ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18 - _ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18 + _ZN23NxsLabelToIndicesMapperD2Ev@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlock14AddAssociationEjRKSt3setIjSt4lessIjESaIjEE@Base 2.1.18 _ZN23NxsTaxaAssociationBlock17HandleTaxaCommandER8NxsToken@Base 2.1.18 _ZN23NxsTaxaAssociationBlock17SetFirstTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18 @@ -397,12 +412,12 @@ _ZN23NxsTaxaAssociationBlockC1Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockC2Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockD0Ev@Base 2.1.18 - _ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18 _ZN23NxsTaxaAssociationBlockD2Ev@Base 2.1.18 _ZN24NxsDistancesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN24NxsDistancesBlockFactoryD0Ev@Base 2.1.18 - _ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18 - _ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18 _ZN24NxsTransformationManager10AddIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK16NxsIntStepMatrix@Base 2.1.18 _ZN24NxsTransformationManager10AddTypeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18 _ZN24NxsTransformationManager11AddRealTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17NxsRealStepMatrix@Base 2.1.18 @@ -414,28 +429,29 @@ _ZN24NxsTransformationManager17GetWeightForIndexERKNSt7__cxx114listISt4pairIiSt3setIjSt4lessIjESaIjEEESaIS8_EEEj@Base 2.1.18 _ZN24NxsTransformationManager18SetDefaultTypeNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN24NxsTransformationManager5ResetEv@Base 2.1.18 - _ZN24NxsTransformationManagerD1Ev@Base 2.1.18 + _ZN24NxsTransformationManagerC2Ev@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24NxsTransformationManagerD1Ev@Base 2.1.18 _ZN24NxsTransformationManagerD2Ev@Base 2.1.18 _ZN24NxsUnalignedBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN24NxsUnalignedBlockFactoryD0Ev@Base 2.1.18 - _ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18 - _ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18 _ZN24WtSetVectorItemValidator7convertB5cxx11ER8NxsToken@Base 2.1.18 _ZN24WtSetVectorItemValidatorD0Ev@Base 2.1.18 - _ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18 - _ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18 _ZN25ExceptionRaisingNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 _ZN25ExceptionRaisingNxsReader12ClearContentEv@Base 2.1.18 _ZN25ExceptionRaisingNxsReader13SkippingBlockE9NxsString@Base 2.1.18 _ZN25ExceptionRaisingNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18 _ZN25ExceptionRaisingNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 _ZN25ExceptionRaisingNxsReaderD0Ev@Base 2.1.18 - _ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18 - _ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18 _ZN25NxsCharactersBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN25NxsCharactersBlockFactoryD0Ev@Base 2.1.18 - _ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18 - _ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18 _ZN25NxsConversionOutputRecord20writeNameTranslationESt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_ESaIS8_EEPK15NxsTaxaBlockAPI@Base 2.1.18 _ZN25NxsConversionOutputRecord31writeTaxonNameTranslationStreamERSoRKSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ESaIS9_EEPK15NxsTaxaBlockAPI@Base 2.1.18 _ZN25NxsConversionOutputRecord32getUniqueFilenameWithLowestIndexB5cxx11EPKc@Base 2.1.18 @@ -449,31 +465,33 @@ _ZN25NxsDiscreteDatatypeMapper38StateCodeForNexusPossibleMultiStateSetEcRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEER8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18 - _ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC1Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2ERKS_@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperC2Ev@Base 2.1.18 - _ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperD2Ev@Base 2.1.18 _ZN25NxsDiscreteDatatypeMapperaSERKS_@Base 2.1.18 + _ZN25NxsSetVectorItemValidatorD2Ev@Base 2.1.21+git20190531.feceb81-2 _ZN25NxsStoreTokensBlockReader11ReadCommandER8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader16CanReadBlockTypeERK8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader4ReadER8NxsToken@Base 2.1.18 _ZN25NxsStoreTokensBlockReader5ResetEv@Base 2.1.18 + _ZN25NxsStoreTokensBlockReaderC2ENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb@Base 2.1.21+git20190531.feceb81-2 _ZN25NxsStoreTokensBlockReaderD0Ev@Base 2.1.18 - _ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18 _ZN25NxsStoreTokensBlockReaderD2Ev@Base 2.1.18 - _ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18 _ZN25NxsUnimplementedExceptionC2E9NxsString@Base 2.1.18 _ZN25NxsUnimplementedExceptionD0Ev@Base 2.1.18 - _ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18 - _ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18 _ZN26NxsAssumptionsBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN26NxsAssumptionsBlockFactoryD0Ev@Base 2.1.18 - _ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18 - _ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18 _ZN27DefaultErrorReportNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18 _ZN27DefaultErrorReportNxsReader13EnteringBlockE9NxsString@Base 2.1.18 _ZN27DefaultErrorReportNxsReader13SkippingBlockE9NxsString@Base 2.1.18 @@ -481,24 +499,24 @@ _ZN27DefaultErrorReportNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18 _ZN27DefaultErrorReportNxsReader9parseFileB5cxx11EPKcPSoS2_bb@Base 2.1.18 _ZN27DefaultErrorReportNxsReaderD0Ev@Base 2.1.18 - _ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18 - _ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18 _ZN27DuplicatedLabelNxsExceptionD0Ev@Base 2.1.18 - _ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18 - _ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactoryD0Ev@Base 2.1.18 - _ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18 _ZN28NxsDefaultPublicBlockFactoryD2Ev@Base 2.1.18 _ZN30NxsTaxaAssociationBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18 _ZN30NxsTaxaAssociationBlockFactoryD0Ev@Base 2.1.18 - _ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18 - _ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN31NxsSignalCanceledParseExceptionD0Ev@Base 2.1.18 - _ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18 - _ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18 _ZN8NxsBlock11SkipCommandER8NxsToken@Base 2.1.18 _ZN8NxsBlock14HandleEndblockER8NxsToken@Base 2.1.18 _ZN8NxsBlock15SkippingCommandE9NxsString@Base 2.1.18 @@ -526,6 +544,7 @@ _ZN8NxsBlockD1Ev@Base 2.1.18 _ZN8NxsBlockD2Ev@Base 2.1.18 _ZN8NxsToken10GetCommentEv@Base 2.1.18 + _ZN8NxsToken11GetNextCharEv@Base 2.1.21+git20190531.feceb81-2 _ZN8NxsToken11NeedsQuotesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN8NxsToken12AbbreviationE9NxsString@Base 2.1.18 _ZN8NxsToken12GetNextTokenEv@Base 2.1.18 @@ -539,6 +558,7 @@ _ZN8NxsToken21UseNewickTokenizationEb@Base 2.1.18 _ZN8NxsToken22GetCurlyBracketedTokenEv@Base 2.1.18 _ZN8NxsToken26ParseAsSimpleKeyValuePairsB5cxx11ERKSt6vectorI17ProcessedNxsTokenSaIS1_EEPKc@Base 2.1.18 + _ZN8NxsToken28ProcessAsSimpleKeyValuePairsB5cxx11EPKc@Base 2.1.21+git20190531.feceb81-2 _ZN8NxsToken40GetQuotedWithInternalSingleQuotesDoubledEv@Base 2.1.21+git20171002.4becff7 _ZN8NxsToken6BeginsE9NxsStringb@Base 2.1.18 _ZN8NxsToken7ToUpperEv@Base 2.1.18 @@ -565,7 +585,7 @@ _ZN9NxsReader13SkippingBlockE9NxsString@Base 2.1.18 _ZN9NxsReader14BlockListEmptyEv@Base 2.1.18 _ZN9NxsReader14NCLHomePageURLEv@Base 2.1.18 - _ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18 _ZN9NxsReader14ReadFilestreamERSi@Base 2.1.18 _ZN9NxsReader15ExecuteStartingEv@Base 2.1.18 _ZN9NxsReader15ExecuteStoppingEv@Base 2.1.18 @@ -647,17 +667,20 @@ _ZN9NxsString8to_lowerERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString8to_upperERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZN9NxsString9ShortenToEj@Base 2.1.18 + _ZN9NxsString9get_upperERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.21+git20190531.feceb81-2 _ZN9NxsString9to_doubleEPKcPd@Base 2.1.18 - _ZN9NxsStringC1EPKc@Base 2.1.18 - _ZN9NxsStringC1ERKS_@Base 2.1.18 - _ZN9NxsStringC2EPKc@Base 2.1.18 - _ZN9NxsStringC2ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringC1EPKc@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringC1ERKS_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringC2EPKc@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringC2ERKS_@Base 2.1.18 _ZN9NxsStringpLEPKc@Base 2.1.18 _ZN9NxsStringpLEc@Base 2.1.18 _ZN9NxsStringpLEd@Base 2.1.18 - _ZN9NxsStringpLEi@Base 2.1.18 - _ZN9NxsStringpLEj@Base 2.1.18 - _ZN9NxsStringpLEl@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringpLEi@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringpLEj@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZN9NxsStringpLEl@Base 2.1.18 + _ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeISt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE16NxsIntStepMatrixEEE7destroyISB_EEvPT_@Base 2.1.21+git20190531.feceb81-2 + _ZN9__gnu_cxx13new_allocatorISt13_Rb_tree_nodeISt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE17NxsRealStepMatrixEEE7destroyISB_EEvPT_@Base 2.1.21+git20190531.feceb81-2 _ZNK12NxsDataBlock5CloneEv@Base 2.1.18 _ZNK12NxsException4whatEv@Base 2.1.18 _ZNK12NxsException8nxs_whatEv@Base 2.1.18 @@ -735,6 +758,7 @@ _ZNK17NxsUnalignedBlock23WriteStatesForMatrixRowERSoj@Base 2.1.18 _ZNK17NxsUnalignedBlock5CloneEv@Base 2.1.18 _ZNK17NxsUnalignedBlock6ReportERSo@Base 2.1.18 + _ZNK17ProcessedNxsToken12WriteAsNexusERSo@Base 2.1.21+git20190531.feceb81-2 _ZNK17PublicNexusReader12GetTaxaBlockEj@Base 2.1.18 _ZNK17PublicNexusReader13GetTreesBlockEPK12NxsTaxaBlockj@Base 2.1.18 _ZNK17PublicNexusReader15GetUnknownBlockEj@Base 2.1.18 @@ -849,10 +873,12 @@ _ZNK24NxsTransformationManager7IsEmptyEv@Base 2.1.18 _ZNK24NxsTransformationManager9IsIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper10DebugPrintERSo@Base 2.1.18 + _ZNK25NxsDiscreteDatatypeMapper13FirstIsSubsetEiib@Base 2.1.21+git20190531.feceb81-2 _ZNK25NxsDiscreteDatatypeMapper13IsPolymorphicEi@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper17PositionInSymbolsEc@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper17ValidateStateCodeEi@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper18ValidateStateIndexEi@Base 2.1.18 + _ZNK25NxsDiscreteDatatypeMapper21GetSymbolsWithGapCharB5cxx11Ev@Base 2.1.21+git20190531.feceb81-2 _ZNK25NxsDiscreteDatatypeMapper21StateCodeForNexusCharEcP8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper22BuildStateSubsetMatrixEv@Base 2.1.18 _ZNK25NxsDiscreteDatatypeMapper22DebugWriteMapperFieldsERSo@Base 2.1.18 @@ -892,7 +918,7 @@ _ZNK8NxsBlock6ReportERSo@Base 2.1.18 _ZNK8NxsBlock7IsEmptyEv@Base 2.1.18 _ZNK8NxsBlock9IsEnabledEv@Base 2.1.18 - _ZNK8NxsToken15GetFilePositionEv@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNK8NxsToken15GetFilePositionEv@Base 2.1.18 _ZNK9NxsReader13statusMessageERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18 _ZNK9NxsReader16GetBlockPriorityEP8NxsBlock@Base 2.1.18 _ZNK9NxsReader20GetAllTitlesForBlockB5cxx11EPK8NxsBlock@Base 2.1.18 @@ -909,208 +935,331 @@ _ZNK9NxsString21EqualsCaseInsensitiveERKS_@Base 2.1.18 _ZNK9NxsString7IsALongEv@Base 2.1.18 _ZNK9NxsString9IsADoubleEv@Base 2.1.18 - _ZNKSt5ctypeIcE8do_widenEc@Base 2.1.18 - _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE4findERKS5_@Base 2.1.18 - _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE4findERS7_@Base 2.1.21+git20180827.c71b264 - (optional)_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE4findERS7_@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNKSt5ctypeIcE8do_widenEc@Base 2.1.18 + _ZNKSt8_Rb_treeI9NxsStringSt4pairIKS0_St3setIjSt4lessIjESaIjEEESt10_Select1stIS8_ES4_IS0_ESaIS8_EE4findERS2_@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE4findERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE4findERS7_@Base 2.1.21+git20180827.c71b264 +#MISSING: 2.1.21+git20190531.feceb81-2# (optional)_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE4findERS7_@Base 2.1.21+git20171002.4becff7 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IS5_St3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE4findERS7_@Base 2.1.18 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.1.18 (optional)_ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.1.21+git20171002.4becff7 + _ZNSt11_Deque_baseIP13NxsSimpleNodeSaIS1_EE17_M_initialize_mapEm@Base 2.1.21+git20190531.feceb81-2 + _ZNSt11_Deque_baseIPK13NxsSimpleNodeSaIS2_EE17_M_initialize_mapEm@Base 2.1.21+git20190531.feceb81-2 + 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2.1.21+git20190531.feceb81-2 (optional)_ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISE_ERS4_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIPK8NxsBlockSt4pairIKS2_NSt7__cxx114listINS5_12basic_stringIcSt11char_traitsIcESaIcEEESaISB_EEEESt10_Select1stISE_ESt4lessIS2_ESaISE_EE8_M_eraseEPSt13_Rb_tree_nodeISE_E@Base 2.1.18 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE17_M_construct_nodeIJRKS3_EEEvPSt13_Rb_tree_nodeIS3_EDpOT_@Base 2.1.21+git20190531.feceb81-2 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE17_M_construct_nodeIJRS3_EEEvPSt13_Rb_tree_nodeIS3_EDpOT_@Base 2.1.21+git20190531.feceb81-2 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE20_Reuse_or_alloc_nodeclIRKS3_EEPSt13_Rb_tree_nodeIS3_EOT_@Base 2.1.21+git20190531.feceb81-2 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOcEESE_IJEEEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_@Base 2.1.21+git20190531.feceb81-2 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESE_IJEEEEESt17_Rb_tree_iteratorIS3_ESt23_Rb_tree_const_iteratorIS3_EDpOT_@Base 2.1.21+git20180827.c71b264 - _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE22_M_insert_range_uniqueISt17_Rb_tree_iteratorIS3_EEENSt9enable_ifIXsr17__same_value_typeIT_EE5valueEvE4typeESE_SE_@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS3_ERS1_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE7_M_copyINS9_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS3_EPKSD_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE7_M_copyINS9_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS3_EPKSD_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EE8_M_eraseEPSt13_Rb_tree_nodeIS3_E@Base 2.1.18 _ZNSt8_Rb_treeIcSt4pairIKc9NxsStringESt10_Select1stIS3_ESt4lessIcESaIS3_EEaSERKS9_@Base 2.1.18 - (optional)_ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE16_M_insert_uniqueIRKcEESt4pairISt17_Rb_tree_iteratorIcEbEOT_@Base 2.1.21+git20171002.4becff7 - _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE24_M_get_insert_unique_posERKc@Base 2.1.18 - _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIcERKc@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# (optional)_ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE16_M_insert_uniqueIRKcEESt4pairISt17_Rb_tree_iteratorIcEbEOT_@Base 2.1.21+git20171002.4becff7 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE24_M_get_insert_unique_posERKc@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIcERKc@Base 2.1.18 _ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE8_M_eraseEPSt13_Rb_tree_nodeIcE@Base 2.1.18 + _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20190531.feceb81-2 _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.1.18 _ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx114listIP8NxsBlockSaIS5_EEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.1.18 - _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 + _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.1.21+git20190531.feceb81-2 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 (optional)_ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIiSt4pairIKiiESt10_Select1stIS2_ESt4lessIiESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIRKiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE24_M_get_insert_unique_posERKi@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIRKiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE24_M_get_insert_unique_posERKi@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIiERKi@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE7_M_copyINS5_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIiEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE7_M_copyINS5_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIiEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE8_M_eraseEPSt13_Rb_tree_nodeIiE@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC1ERKS5_@Base 2.1.18 - _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC2ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC1ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC2ERKS5_@Base 2.1.18 _ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEaSERKS5_@Base 2.1.18 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE17_M_construct_nodeIJRKS8_EEEvPSt13_Rb_tree_nodeIS8_EDpOT_@Base 2.1.21+git20190531.feceb81-2 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE20_Reuse_or_alloc_nodeclIRKS8_EEPSt13_Rb_tree_nodeIS8_EOT_@Base 2.1.21+git20190531.feceb81-2 + _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOjEESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 2.1.21+git20190531.feceb81-2 _ZNSt8_Rb_treeIjSt4pairIKjNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIjESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 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_ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOjEESH_IJEEEEESt17_Rb_tree_iteratorIS6_ESt23_Rb_tree_const_iteratorIS6_EDpOT_@Base 2.1.21+git20180827.c71b264 + _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS6_ERS1_@Base 2.1.21+git20190531.feceb81-2 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE7_M_copyINSC_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS6_EPKSG_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EE8_M_eraseEPSt13_Rb_tree_nodeIS6_E@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjSt6vectorI9NxsStringSaIS3_EEESt10_Select1stIS6_ESt4lessIjESaIS6_EEaSERKSC_@Base 2.1.18 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_ZNSt8_Rb_treeIjSt4pairIKjdESt10_Select1stIS2_ESt4lessIjESaIS2_EEaSERKS8_@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.1.21+git20180827.c71b264 - _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.1.21+git20180827.c71b264 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE7_M_copyINS8_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.1.18 _ZNSt8_Rb_treeIjSt4pairIKjiESt10_Select1stIS2_ESt4lessIjESaIS2_EEaSERKS8_@Base 2.1.21+git20171002.4becff7 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE22_M_insert_range_uniqueISt23_Rb_tree_const_iteratorIjEEENSt9enable_ifIXsrSt7is_sameIjNSt15iterator_traitsIT_E10value_typeEE5valueEvE4typeESC_SC_@Base 2.1.21+git20180827.c71b264 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE24_M_get_insert_unique_posERKj@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE22_M_insert_range_uniqueISt23_Rb_tree_const_iteratorIjEEENSt9enable_ifIXsrSt7is_sameIjNSt15iterator_traitsIT_E10value_typeEE5valueEvE4typeESC_SC_@Base 2.1.21+git20180827.c71b264 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE24_M_get_insert_unique_posERKj@Base 2.1.18 (optional)_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIjERKj@Base 2.1.21+git20171002.4becff7 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE5eraseERKj@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE7_M_copyINS5_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIjEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE7_M_copyINS5_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIjEPKS9_PSt18_Rb_tree_node_baseRT_@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE8_M_eraseEPSt13_Rb_tree_nodeIjE@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC1ERKS5_@Base 2.1.18 - _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC2ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC1ERKS5_@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEC2ERKS5_@Base 2.1.18 _ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEEaSERKS5_@Base 2.1.18 _ZSt11__set_unionISt23_Rb_tree_const_iteratorIiES1_St15insert_iteratorISt3setIiSt4lessIiESaIiEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SD_T0_SE_SC_T2_@Base 2.1.21+git20180827.c71b264 _ZSt11__set_unionISt23_Rb_tree_const_iteratorIjES1_St15insert_iteratorISt3setIjSt4lessIjESaIjEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SD_T0_SE_SC_T2_@Base 2.1.21+git20180827.c71b264 + _ZSt18__set_intersectionISt23_Rb_tree_const_iteratorIiES1_St15insert_iteratorISt3setIiSt4lessIiESaIiEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SD_T0_SE_SC_T2_@Base 2.1.21+git20190531.feceb81-2 + _ZSt18__set_intersectionISt23_Rb_tree_const_iteratorIiES1_St20back_insert_iteratorISt6vectorIiSaIiEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SB_T0_SC_SA_T2_@Base 2.1.21+git20190531.feceb81-2 + _ZSt18__set_intersectionISt23_Rb_tree_const_iteratorIjES1_St20back_insert_iteratorISt6vectorIjSaIjEEEN9__gnu_cxx5__ops15_Iter_less_iterEET1_T_SB_T0_SC_SA_T2_@Base 2.1.21+git20190531.feceb81-2 _ZTI12NxsDataBlock@Base 2.1.18 _ZTI12NxsException@Base 2.1.18 _ZTI12NxsTaxaBlock@Base 2.1.18 @@ -1358,7 +1557,7 @@ _ZTV13NxsTreesBlock@Base 2.1.18 _ZTV15NxsTaxaBlockAPI@Base 2.1.18 _ZTV16BogusToIndMapper@Base 2.1.18 - _ZTV16NxsTreesBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZTV16NxsTreesBlockAPI@Base 2.1.18 _ZTV17NxsDistancesBlock@Base 2.1.18 _ZTV17NxsUnalignedBlock@Base 2.1.18 _ZTV17PublicNexusReader@Base 2.1.18 @@ -1370,9 +1569,9 @@ _ZTV19NxsTaxaBlockFactory@Base 2.1.18 _ZTV20NxsCloneBlockFactory@Base 2.1.18 _ZTV20NxsTreesBlockFactory@Base 2.1.18 - _ZTV21NxsCharactersBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZTV21NxsCharactersBlockAPI@Base 2.1.18 _ZTV21NxsTaxaBlockSurrogate@Base 2.1.18 - _ZTV22NxsAssumptionsBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZTV22NxsAssumptionsBlockAPI@Base 2.1.18 _ZTV23NxsTaxaAssociationBlock@Base 2.1.18 _ZTV24NxsDistancesBlockFactory@Base 2.1.18 _ZTV24NxsUnalignedBlockFactory@Base 2.1.18 @@ -1382,7 +1581,7 @@ _ZTV25NxsStoreTokensBlockReader@Base 2.1.18 _ZTV25NxsUnimplementedException@Base 2.1.18 _ZTV26NxsAssumptionsBlockFactory@Base 2.1.18 - _ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18 +#MISSING: 2.1.21+git20190531.feceb81-2# _ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18 _ZTV27DefaultErrorReportNxsReader@Base 2.1.18 _ZTV27DuplicatedLabelNxsException@Base 2.1.18 _ZTV28NxsDefaultPublicBlockFactory@Base 2.1.18 @@ -1402,6 +1601,8 @@ _ZThn192_N13NxsTreesBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18 _ZThn192_N13NxsTreesBlockD0Ev@Base 2.1.18 _ZThn192_N13NxsTreesBlockD1Ev@Base 2.1.18 + _ZThn192_N15NxsTaxaBlockAPID0Ev@Base 2.1.21+git20190531.feceb81-2 + _ZThn192_N15NxsTaxaBlockAPID1Ev@Base 2.1.21+git20190531.feceb81-2 _ZThn192_N17NxsDistancesBlockD0Ev@Base 2.1.18 _ZThn192_N17NxsDistancesBlockD1Ev@Base 2.1.18 _ZThn192_N17NxsUnalignedBlockD0Ev@Base 2.1.18 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:8: binary] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-25T14:03:10Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 322980 Build-Time: 134 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 6 Job: libncl_2.1.21+git20190531.feceb81-2 Machine Architecture: amd64 Package: libncl Package-Time: 158 Source-Version: 2.1.21+git20190531.feceb81-2 Space: 322980 Status: attempted Version: 2.1.21+git20190531.feceb81-2 -------------------------------------------------------------------------------- Finished at 2020-02-25T14:03:10Z Build needed 00:02:38, 322980k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 158.565362987s DC-Time-Estimation: 158.565362987 versus expected 443 (r/m: 1.7938005605695835 ; m: 158.565362987)