DC-Build-Header: pnetcdf 1.12.1-1 / 2020-02-25 12:36:32 +0000 DC-Task: type:rebuild-binarch-only source:pnetcdf version:1.12.1-1 chroot:unstable esttime:1232 logfile:/tmp/pnetcdf_1.12.1-1_unstable_clang9.log modes:clang9:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang9 pnetcdf_1.12.1-1' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-1-11.eu-central-1.compute.internal +==============================================================================+ | pnetcdf 1.12.1-1 (amd64) Tue, 25 Feb 2020 12:36:32 +0000 | +==============================================================================+ Package: pnetcdf Version: 1.12.1-1 Source Version: 1.12.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-ab343772-cd65-4a4a-a3c7-6dd7384f3f0b' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang9 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=9 + echo 'Install of clang-9' Install of clang-9 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:9 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:14 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB] Fetched 6604 kB in 2s (3887 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-9 libomp-9-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libgcc-9-dev libllvm9 libmpx2 libobjc-8-dev libobjc4 libomp5-9 libstdc++-8-dev libstdc++-9-dev libz3-4 Suggested packages: clang-9-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib libomp-9-doc libstdc++-8-doc libstdc++-9-doc Recommended packages: llvm-9-dev python3 The following NEW packages will be installed: clang-9 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libllvm9 libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-9-dev libomp5-9 libstdc++-8-dev libz3-4 The following packages will be upgraded: cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev 7 upgraded, 21 newly installed, 0 to remove and 2 not upgraded. Need to get 78.9 MB of archives. After this operation, 237 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp9 amd64 1:9.0.1-8 [8429 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B] Get:23 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-9-dev amd64 1:9.0.1-8 [3727 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 clang-9 amd64 1:9.0.1-8 [1156 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp5-9 amd64 1:9.0.1-8 [333 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libomp-9-dev amd64 1:9.0.1-8 [66.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.9 MB in 1s (104 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12119 files and directories currently installed.) Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ... Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ... Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../04-libgcc-9-dev_9.2.1-30_amd64.deb ... Unpacking libgcc-9-dev:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../05-cpp-9_9.2.1-30_amd64.deb ... Unpacking cpp-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../06-gcc-9-base_9.2.1-30_amd64.deb ... Unpacking gcc-9-base:amd64 (9.2.1-30) over (9.2.1-29) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../07-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../08-libedit2_3.1-20191231-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-1) ... Selecting previously unselected package libz3-4:amd64. Preparing to unpack .../09-libz3-4_4.8.7-4_amd64.deb ... Unpacking libz3-4:amd64 (4.8.7-4) ... Selecting previously unselected package libllvm9:amd64. Preparing to unpack .../10-libllvm9_1%3a9.0.1-8_amd64.deb ... Unpacking libllvm9:amd64 (1:9.0.1-8) ... Selecting previously unselected package libclang-cpp9. Preparing to unpack .../11-libclang-cpp9_1%3a9.0.1-8_amd64.deb ... Unpacking libclang-cpp9 (1:9.0.1-8) ... Selecting previously unselected package gcc-8-base:amd64. Preparing to unpack .../12-gcc-8-base_8.3.0-29_amd64.deb ... Unpacking gcc-8-base:amd64 (8.3.0-29) ... Selecting previously unselected package libmpx2:amd64. Preparing to unpack .../13-libmpx2_8.3.0-29_amd64.deb ... Unpacking libmpx2:amd64 (8.3.0-29) ... Selecting previously unselected package libgcc-8-dev:amd64. Preparing to unpack .../14-libgcc-8-dev_8.3.0-29_amd64.deb ... Unpacking libgcc-8-dev:amd64 (8.3.0-29) ... Selecting previously unselected package libstdc++-8-dev:amd64. Preparing to unpack .../15-libstdc++-8-dev_8.3.0-29_amd64.deb ... Unpacking libstdc++-8-dev:amd64 (8.3.0-29) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../16-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../17-libobjc4_10-20200222-1_amd64.deb ... Unpacking libobjc4:amd64 (10-20200222-1) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../18-libobjc-8-dev_8.3.0-29_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.3.0-29) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../19-libc6-i386_2.29-10_amd64.deb ... Unpacking libc6-i386 (2.29-10) ... Selecting previously unselected package lib32gcc-s1. Preparing to unpack .../20-lib32gcc-s1_10-20200222-1_amd64.deb ... Unpacking lib32gcc-s1 (10-20200222-1) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../21-lib32gcc1_1%3a10-20200222-1_amd64.deb ... Unpacking lib32gcc1 (1:10-20200222-1) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../22-lib32stdc++6_10-20200222-1_amd64.deb ... Unpacking lib32stdc++6 (10-20200222-1) ... Selecting previously unselected package libclang-common-9-dev. Preparing to unpack .../23-libclang-common-9-dev_1%3a9.0.1-8_amd64.deb ... Unpacking libclang-common-9-dev (1:9.0.1-8) ... Selecting previously unselected package clang-9. Preparing to unpack .../24-clang-9_1%3a9.0.1-8_amd64.deb ... Unpacking clang-9 (1:9.0.1-8) ... Selecting previously unselected package libobjc-9-dev:amd64. Preparing to unpack .../25-libobjc-9-dev_9.2.1-30_amd64.deb ... Unpacking libobjc-9-dev:amd64 (9.2.1-30) ... Selecting previously unselected package libomp5-9:amd64. Preparing to unpack .../26-libomp5-9_1%3a9.0.1-8_amd64.deb ... Unpacking libomp5-9:amd64 (1:9.0.1-8) ... Selecting previously unselected package libomp-9-dev. Preparing to unpack .../27-libomp-9-dev_1%3a9.0.1-8_amd64.deb ... Unpacking libomp-9-dev (1:9.0.1-8) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libobjc4:amd64 (10-20200222-1) ... Setting up libz3-4:amd64 (4.8.7-4) ... Setting up gcc-8-base:amd64 (8.3.0-29) ... Setting up libmpx2:amd64 (8.3.0-29) ... Setting up libc6-i386 (2.29-10) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up gcc-9-base:amd64 (9.2.1-30) ... Setting up libomp5-9:amd64 (1:9.0.1-8) ... Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up libasan5:amd64 (9.2.1-30) ... Setting up lib32gcc-s1 (10-20200222-1) ... Setting up libgcc-8-dev:amd64 (8.3.0-29) ... Setting up libomp-9-dev (1:9.0.1-8) ... Setting up cpp-9 (9.2.1-30) ... Setting up libllvm9:amd64 (1:9.0.1-8) ... Setting up libstdc++-8-dev:amd64 (8.3.0-29) ... Setting up libclang-cpp9 (1:9.0.1-8) ... Setting up lib32gcc1 (1:10-20200222-1) ... Setting up libgcc-9-dev:amd64 (9.2.1-30) ... Setting up libobjc-8-dev:amd64 (8.3.0-29) ... Setting up lib32stdc++6 (10-20200222-1) ... Setting up libobjc-9-dev:amd64 (9.2.1-30) ... Setting up libclang-common-9-dev (1:9.0.1-8) ... Setting up gcc-9 (9.2.1-30) ... Setting up libstdc++-9-dev:amd64 (9.2.1-30) ... Setting up clang-9 (1:9.0.1-8) ... Setting up g++-9 (9.2.1-30) ... Processing triggers for libc-bin (2.29-10) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-9 g++-4.6 + ln -s clang-9 gcc-4.6 + ln -s clang-9 cpp-4.6 + ln -s clang-9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-9 g++-4.7 + ln -s clang-9 gcc-4.7 + ln -s clang-9 cpp-4.7 + ln -s clang-9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-9 g++-4.8 + ln -s clang-9 gcc-4.8 + ln -s clang-9 cpp-4.8 + ln -s clang-9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-9 g++-4.9 + ln -s clang-9 gcc-4.9 + ln -s clang-9 cpp-4.9 + ln -s clang-9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-9 g++-5 + ln -s clang-9 gcc-5 + ln -s clang-9 cpp-5 + ln -s clang-9 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-9 g++-6 + ln -s clang-9 gcc-6 + ln -s clang-9 cpp-6 + ln -s clang-9 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-9 g++-7 + ln -s clang-9 gcc-7 + ln -s clang-9 cpp-7 + ln -s clang-9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-9 g++-8 + ln -s clang-9 gcc-8 + ln -s clang-9 cpp-8 + ln -s clang-9 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-9 g++-9 + ln -s clang-9 gcc-9 + ln -s clang-9 cpp-9 + ln -s clang-9 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-9 g++-10 + ln -s clang-9 gcc-10 + ln -s clang-9 cpp-10 + ln -s clang-9 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/pnetcdf-rp9cB1 + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang9'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/pnetcdf-rp9cB1/resolver-PKOjDE' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgmp10 zlib1g 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 343 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 343 kB in 0s (6323 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'pnetcdf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org:/science-team/pnetcdf.git Please use: git clone https://salsa.debian.org:/science-team/pnetcdf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1526 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main pnetcdf 1.12.1-1 (dsc) [2429 B] Get:2 http://127.0.0.1:12990/debian sid/main pnetcdf 1.12.1-1 (tar) [1518 kB] Get:3 http://127.0.0.1:12990/debian sid/main pnetcdf 1.12.1-1 (diff) [6316 B] Fetched 1526 kB in 0s (10.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/pnetcdf-rp9cB1/pnetcdf-1.12.1' with '<>' I: NOTICE: Log filtering will replace 'build/pnetcdf-rp9cB1' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), gfortran | fortran-compiler, dh-fortran-mod, mpi-default-dev, libutf8proc-dev, chrpath, texlive-latex-base, ghostscript, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), gfortran, dh-fortran-mod, mpi-default-dev, libutf8proc-dev, chrpath, texlive-latex-base, ghostscript, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [440 B] Get:5 copy:/<>/apt_archive ./ Packages [513 B] Fetched 1910 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-fortran-mod dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern fonts-urw-base35 gettext gettext-base gfortran gfortran-9 ghostscript groff-base ibverbs-providers intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcbor0 libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-libmagic-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu63 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenjp2-7 libopenmpi-dev libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 libptexenc1 librdmacm1 libsigsegv2 libsm6 libssl1.1 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libutf8proc-dev libutf8proc2 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf poppler-data sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev ghostscript-x groff cups-common krb5-doc krb5-user libhwloc-contrib-plugins liblcms2-utils libtool-doc openmpi-doc pciutils gcj-jdk m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum perl-tk xpdf | pdf-viewer xzdec texlive-latex-base-doc Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libcoarrays-openmpi-dev xauth libmail-sendmail-perl lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath debhelper dh-autoreconf dh-fortran-mod dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern fonts-urw-base35 gettext gettext-base gfortran gfortran-9 ghostscript groff-base ibverbs-providers intltool-debian libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcbor0 libcroco3 libcups2 libdbus-1-3 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-libmagic-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libice6 libicu63 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenjp2-7 libopenmpi-dev libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpipeline1 libpixman-1-0 libpmix2 libpng16-16 libpsm-infinipath1 libpsm2-2 libptexenc1 librdmacm1 libsigsegv2 libsm6 libssl1.1 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libutf8proc-dev libutf8proc2 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf poppler-data sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-latex-base ucf x11-common xdg-utils 0 upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 99.5 MB of archives. After this operation, 353 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 tex-common all 6.13 [53.2 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libfido2-1 amd64 1.3.1-1 [47.4 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 openssh-client amd64 1:8.2p1-3 [906 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 libfile-libmagic-perl amd64 1.16-1+b2 [24.7 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 dh-fortran-mod all 0.15 [11.9 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 fonts-lmodern all 2.004.5-6 [4539 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 libgfortran5 amd64 10-20200222-1 [721 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 libgfortran-9-dev amd64 9.2.1-30 [676 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 gfortran-9 amd64 9.2.1-30 [10.4 MB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 gfortran amd64 4:9.2.1-3.1 [1432 B] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libgs9-common all 9.50~dfsg-5 [725 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common-data amd64 0.7-5 [122 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libavahi-common3 amd64 0.7-5 [54.6 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libdbus-1-3 amd64 1.12.16-2 [214 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 libavahi-client3 amd64 0.7-5 [58.2 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 libcups2 amd64 2.3.1-11 [349 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 libpng16-16 amd64 1.6.37-2 [292 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 libfreetype6 amd64 2.10.1-2 [392 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 libfontconfig1 amd64 2.13.1-2+b1 [347 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 libjbig2dec0 amd64 0.17-1 [63.5 kB] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 liblcms2-2 amd64 2.9-4 [146 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 libopenjp2-7 amd64 2.3.1-1 [159 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 libgs9 amd64 9.50~dfsg-5 [2227 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 ghostscript amd64 9.50~dfsg-5 [95.8 kB] Get:80 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libibverbs1 amd64 28.0-1 [54.5 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 ibverbs-providers amd64 28.0-1 [234 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:87 http://127.0.0.1:12990/debian sid/main amd64 libxcb1 amd64 1.13.1-5 [137 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 libx11-data all 2:1.6.8-1 [298 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 libxcb-render0 amd64 1.13.1-5 [109 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 libxcb-shm0 amd64 1.13.1-5 [99.3 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:94 http://127.0.0.1:12990/debian sid/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 libevent-2.1-7 amd64 2.1.11-stable-1 [186 kB] Get:96 http://127.0.0.1:12990/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.11-stable-1 [137 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 libevent-extra-2.1-7 amd64 2.1.11-stable-1 [108 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.11-stable-1 [55.1 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 libevent-openssl-2.1-7 amd64 2.1.11-stable-1 [62.0 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 libevent-dev amd64 2.1.11-stable-1 [309 kB] Get:101 http://127.0.0.1:12990/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6+b1 [169 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:103 http://127.0.0.1:12990/debian sid/main amd64 libpsm2-2 amd64 11.2.86-1 [177 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 librdmacm1 amd64 28.0-1 [67.1 kB] Get:105 http://127.0.0.1:12990/debian sid/main amd64 libfabric1 amd64 1.6.2-3+b1 [397 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 libgraphite2-3 amd64 1.3.13-11 [80.9 kB] Get:107 http://127.0.0.1:12990/debian sid/main amd64 libharfbuzz0b amd64 2.6.4-1 [1360 kB] Get:108 http://127.0.0.1:12990/debian sid/main amd64 libharfbuzz-icu0 amd64 2.6.4-1 [976 kB] Get:109 http://127.0.0.1:12990/debian sid/main amd64 libltdl7 amd64 2.4.6-13 [390 kB] Get:110 http://127.0.0.1:12990/debian sid/main amd64 libhwloc15 amd64 2.1.0+dfsg-3 [139 kB] Get:111 http://127.0.0.1:12990/debian sid/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get:112 http://127.0.0.1:12990/debian sid/main amd64 libltdl-dev amd64 2.4.6-13 [162 kB] Get:113 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-dev amd64 2.1.0+dfsg-3 [210 kB] Get:114 http://127.0.0.1:12990/debian sid/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:115 http://127.0.0.1:12990/debian sid/main amd64 libxnvctrl0 amd64 440.59-1 [26.2 kB] Get:116 http://127.0.0.1:12990/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-3 [37.7 kB] Get:117 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-plugins amd64 2.1.0+dfsg-3 [19.9 kB] Get:118 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get:119 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get:120 http://127.0.0.1:12990/debian sid/main amd64 libibverbs-dev amd64 28.0-1 [444 kB] Get:121 http://127.0.0.1:12990/debian sid/main amd64 x11-common all 1:7.7+20 [252 kB] Get:122 http://127.0.0.1:12990/debian sid/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:123 http://127.0.0.1:12990/debian sid/main amd64 libkpathsea6 amd64 2019.20190605.51237-3 [169 kB] Get:124 http://127.0.0.1:12990/debian sid/main amd64 libpmix2 amd64 3.1.4-1+b1 [431 kB] Get:125 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi3 amd64 4.0.2-5 [1993 kB] Get:126 http://127.0.0.1:12990/debian sid/main amd64 openmpi-common all 4.0.2-5 [169 kB] Get:127 http://127.0.0.1:12990/debian sid/main amd64 openmpi-bin amd64 4.0.2-5 [186 kB] Get:128 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi-dev amd64 4.0.2-5 [915 kB] Get:129 http://127.0.0.1:12990/debian sid/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:130 http://127.0.0.1:12990/debian sid/main amd64 libptexenc1 amd64 2019.20190605.51237-3 [62.8 kB] Get:131 http://127.0.0.1:12990/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:132 http://127.0.0.1:12990/debian sid/main amd64 libsynctex2 amd64 2019.20190605.51237-3 [81.8 kB] Get:133 http://127.0.0.1:12990/debian sid/main amd64 libteckit0 amd64 2.5.8+ds2-5 [318 kB] Get:134 http://127.0.0.1:12990/debian sid/main amd64 libtexlua53 amd64 2019.20190605.51237-3 [128 kB] Get:135 http://127.0.0.1:12990/debian sid/main amd64 libtexluajit2 amd64 2019.20190605.51237-3 [258 kB] Get:136 http://127.0.0.1:12990/debian sid/main amd64 libutf8proc2 amd64 2.4.0-2 [54.6 kB] Get:137 http://127.0.0.1:12990/debian sid/main amd64 libutf8proc-dev amd64 2.4.0-2 [59.3 kB] Get:138 http://127.0.0.1:12990/debian sid/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:139 http://127.0.0.1:12990/debian sid/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:140 http://127.0.0.1:12990/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:141 http://127.0.0.1:12990/debian sid/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:142 http://127.0.0.1:12990/debian sid/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:143 http://127.0.0.1:12990/debian sid/main amd64 libzzip-0-13 amd64 0.13.62-3.2 [55.4 kB] Get:144 http://127.0.0.1:12990/debian sid/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get:145 http://127.0.0.1:12990/debian sid/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:146 http://127.0.0.1:12990/debian sid/main amd64 texlive-binaries amd64 2019.20190605.51237-3 [8054 kB] Get:147 http://127.0.0.1:12990/debian sid/main amd64 xdg-utils all 1.1.3-1 [73.3 kB] Get:148 http://127.0.0.1:12990/debian sid/main amd64 texlive-base all 2019.20200218-1 [20.9 MB] Get:149 http://127.0.0.1:12990/debian sid/main amd64 texlive-latex-base all 2019.20200218-1 [1019 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 99.5 MB in 1s (101 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../000-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../005-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package ucf. Preparing to unpack .../007-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../008-tex-common_6.13_all.deb ... Unpacking tex-common (6.13) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../010-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package libcbor0:amd64. Preparing to unpack .../013-libcbor0_0.5.0+dfsg-2_amd64.deb ... Unpacking libcbor0:amd64 (0.5.0+dfsg-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../014-libssl1.1_1.1.1d-2_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../015-libfido2-1_1.3.1-1_amd64.deb ... Unpacking libfido2-1:amd64 (1.3.1-1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../016-libkeyutils1_1.6.1-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../017-libkrb5support0_1.17-6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-6) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../018-libk5crypto3_1.17-6_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../019-libkrb5-3_1.17-6_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-6) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../020-libgssapi-krb5-2_1.17-6_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-6) ... Selecting previously unselected package openssh-client. Preparing to unpack .../021-openssh-client_1%3a8.2p1-3_amd64.deb ... Unpacking openssh-client (1:8.2p1-3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../022-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../023-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../024-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../025-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../026-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../027-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package chrpath. Preparing to unpack .../028-chrpath_0.16-2+b1_amd64.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package libtool. Preparing to unpack .../029-libtool_2.4.6-13_all.deb ... Unpacking libtool (2.4.6-13) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../030-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../031-libdebhelper-perl_12.9_all.deb ... Unpacking libdebhelper-perl (12.9) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../032-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../033-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../034-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../035-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../036-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../037-dwz_0.13-5_amd64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../038-libglib2.0-0_2.62.4-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.62.4-2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../039-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../040-libxml2_2.9.10+dfsg-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../041-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../042-gettext_0.19.8.1-10_amd64.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../043-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../044-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../045-debhelper_12.9_all.deb ... Unpacking debhelper (12.9) ... Selecting previously unselected package libfile-libmagic-perl. Preparing to unpack .../046-libfile-libmagic-perl_1.16-1+b2_amd64.deb ... Unpacking libfile-libmagic-perl (1.16-1+b2) ... Selecting previously unselected package dh-fortran-mod. Preparing to unpack .../047-dh-fortran-mod_0.15_all.deb ... Unpacking dh-fortran-mod (0.15) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../048-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../049-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../050-fonts-lmodern_2.004.5-6_all.deb ... Unpacking fonts-lmodern (2.004.5-6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../051-fonts-urw-base35_20170801.1-3_all.deb ... Unpacking fonts-urw-base35 (20170801.1-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../052-libgfortran5_10-20200222-1_amd64.deb ... Unpacking libgfortran5:amd64 (10-20200222-1) ... Selecting previously unselected package libgfortran-9-dev:amd64. Preparing to unpack .../053-libgfortran-9-dev_9.2.1-30_amd64.deb ... Unpacking libgfortran-9-dev:amd64 (9.2.1-30) ... Selecting previously unselected package gfortran-9. Preparing to unpack .../054-gfortran-9_9.2.1-30_amd64.deb ... Unpacking gfortran-9 (9.2.1-30) ... Selecting previously unselected package gfortran. Preparing to unpack .../055-gfortran_4%3a9.2.1-3.1_amd64.deb ... Unpacking gfortran (4:9.2.1-3.1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../056-libgs9-common_9.50~dfsg-5_all.deb ... Unpacking libgs9-common (9.50~dfsg-5) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../057-libavahi-common-data_0.7-5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../058-libavahi-common3_0.7-5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-5) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../059-libdbus-1-3_1.12.16-2_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.16-2) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../060-libavahi-client3_0.7-5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-5) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../061-libcups2_2.3.1-11_amd64.deb ... Unpacking libcups2:amd64 (2.3.1-11) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../062-libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../063-libpng16-16_1.6.37-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../064-libfreetype6_2.10.1-2_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../065-libfontconfig1_2.13.1-2+b1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2+b1) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../066-libidn11_1.33-2.2_amd64.deb ... Unpacking libidn11:amd64 (1.33-2.2) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../067-libijs-0.35_0.35-15_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-15) ... Selecting previously unselected package libjbig2dec0:amd64. Preparing to unpack .../068-libjbig2dec0_0.17-1_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.17-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../069-libjpeg62-turbo_1%3a1.5.2-2+b1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../070-liblcms2-2_2.9-4_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-4) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../071-libopenjp2-7_2.3.1-1_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.3.1-1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../072-libpaper1_1.1.28+b1_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28+b1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../073-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../074-libwebp6_0.6.1-2+b1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2+b1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../075-libtiff5_4.1.0+git191117-2_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2) ... Selecting previously unselected package libgs9:amd64. Preparing to unpack .../076-libgs9_9.50~dfsg-5_amd64.deb ... Unpacking libgs9:amd64 (9.50~dfsg-5) ... Selecting previously unselected package ghostscript. Preparing to unpack .../077-ghostscript_9.50~dfsg-5_amd64.deb ... Unpacking ghostscript (9.50~dfsg-5) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../078-libnl-3-200_3.4.0-1+b1_amd64.deb ... Unpacking libnl-3-200:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../079-libnl-route-3-200_3.4.0-1+b1_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../080-libibverbs1_28.0-1_amd64.deb ... Unpacking libibverbs1:amd64 (28.0-1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../081-ibverbs-providers_28.0-1_amd64.deb ... Unpacking ibverbs-providers:amd64 (28.0-1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../082-libpixman-1-0_0.36.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../083-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../084-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../085-libxcb1_1.13.1-5_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-5) ... Selecting previously unselected package libx11-data. Preparing to unpack .../086-libx11-data_2%3a1.6.8-1_all.deb ... Unpacking libx11-data (2:1.6.8-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../087-libx11-6_2%3a1.6.8-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.8-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../088-libxcb-render0_1.13.1-5_amd64.deb ... Unpacking libxcb-render0:amd64 (1.13.1-5) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../089-libxcb-shm0_1.13.1-5_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.13.1-5) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../090-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../091-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../092-libcairo2_1.16.0-4_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-4) ... Selecting previously unselected package libevent-2.1-7:amd64. Preparing to unpack .../093-libevent-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../094-libevent-core-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-extra-2.1-7:amd64. Preparing to unpack .../095-libevent-extra-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../096-libevent-pthreads-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-openssl-2.1-7:amd64. Preparing to unpack .../097-libevent-openssl-2.1-7_2.1.11-stable-1_amd64.deb ... Unpacking libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../098-libevent-dev_2.1.11-stable-1_amd64.deb ... Unpacking libevent-dev (2.1.11-stable-1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../099-libpsm-infinipath1_3.3+20.604758e7-6+b1_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../100-libnuma1_2.0.12-1+b1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.12-1+b1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../101-libpsm2-2_11.2.86-1_amd64.deb ... Unpacking libpsm2-2 (11.2.86-1) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../102-librdmacm1_28.0-1_amd64.deb ... Unpacking librdmacm1:amd64 (28.0-1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../103-libfabric1_1.6.2-3+b1_amd64.deb ... Unpacking libfabric1 (1.6.2-3+b1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../104-libgraphite2-3_1.3.13-11_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-11) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../105-libharfbuzz0b_2.6.4-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.6.4-1) ... Selecting previously unselected package libharfbuzz-icu0:amd64. Preparing to unpack .../106-libharfbuzz-icu0_2.6.4-1_amd64.deb ... Unpacking libharfbuzz-icu0:amd64 (2.6.4-1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../107-libltdl7_2.4.6-13_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-13) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../108-libhwloc15_2.1.0+dfsg-3_amd64.deb ... Unpacking libhwloc15:amd64 (2.1.0+dfsg-3) ... Selecting previously unselected package libnuma-dev:amd64. Preparing to unpack .../109-libnuma-dev_2.0.12-1+b1_amd64.deb ... Unpacking libnuma-dev:amd64 (2.0.12-1+b1) ... Selecting previously unselected package libltdl-dev:amd64. Preparing to unpack .../110-libltdl-dev_2.4.6-13_amd64.deb ... Unpacking libltdl-dev:amd64 (2.4.6-13) ... Selecting previously unselected package libhwloc-dev:amd64. Preparing to unpack .../111-libhwloc-dev_2.1.0+dfsg-3_amd64.deb ... Unpacking libhwloc-dev:amd64 (2.1.0+dfsg-3) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../112-libpciaccess0_0.14-1_amd64.deb ... Unpacking libpciaccess0:amd64 (0.14-1) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../113-libxnvctrl0_440.59-1_amd64.deb ... Unpacking libxnvctrl0:amd64 (440.59-1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../114-ocl-icd-libopencl1_2.2.12-3_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.12-3) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../115-libhwloc-plugins_2.1.0+dfsg-3_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.1.0+dfsg-3) ... Selecting previously unselected package libnl-3-dev:amd64. Preparing to unpack .../116-libnl-3-dev_3.4.0-1+b1_amd64.deb ... Unpacking libnl-3-dev:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-dev:amd64. Preparing to unpack .../117-libnl-route-3-dev_3.4.0-1+b1_amd64.deb ... Unpacking libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs-dev:amd64. Preparing to unpack .../118-libibverbs-dev_28.0-1_amd64.deb ... Unpacking libibverbs-dev:amd64 (28.0-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../119-x11-common_1%3a7.7+20_all.deb ... Unpacking x11-common (1:7.7+20) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../120-libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../121-libkpathsea6_2019.20190605.51237-3_amd64.deb ... Unpacking libkpathsea6:amd64 (2019.20190605.51237-3) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../122-libpmix2_3.1.4-1+b1_amd64.deb ... Unpacking libpmix2:amd64 (3.1.4-1+b1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../123-libopenmpi3_4.0.2-5_amd64.deb ... Unpacking libopenmpi3:amd64 (4.0.2-5) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../124-openmpi-common_4.0.2-5_all.deb ... Unpacking openmpi-common (4.0.2-5) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../125-openmpi-bin_4.0.2-5_amd64.deb ... Unpacking openmpi-bin (4.0.2-5) ... Selecting previously unselected package libopenmpi-dev:amd64. Preparing to unpack .../126-libopenmpi-dev_4.0.2-5_amd64.deb ... Unpacking libopenmpi-dev:amd64 (4.0.2-5) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../127-libpaper-utils_1.1.28+b1_amd64.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../128-libptexenc1_2019.20190605.51237-3_amd64.deb ... Unpacking libptexenc1:amd64 (2019.20190605.51237-3) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../129-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../130-libsynctex2_2019.20190605.51237-3_amd64.deb ... Unpacking libsynctex2:amd64 (2019.20190605.51237-3) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../131-libteckit0_2.5.8+ds2-5_amd64.deb ... Unpacking libteckit0:amd64 (2.5.8+ds2-5) ... Selecting previously unselected package libtexlua53:amd64. Preparing to unpack .../132-libtexlua53_2019.20190605.51237-3_amd64.deb ... Unpacking libtexlua53:amd64 (2019.20190605.51237-3) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../133-libtexluajit2_2019.20190605.51237-3_amd64.deb ... Unpacking libtexluajit2:amd64 (2019.20190605.51237-3) ... Selecting previously unselected package libutf8proc2:amd64. Preparing to unpack .../134-libutf8proc2_2.4.0-2_amd64.deb ... Unpacking libutf8proc2:amd64 (2.4.0-2) ... Selecting previously unselected package libutf8proc-dev:amd64. Preparing to unpack .../135-libutf8proc-dev_2.4.0-2_amd64.deb ... Unpacking libutf8proc-dev:amd64 (2.4.0-2) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../136-libxt6_1%3a1.1.5-1+b3_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1+b3) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../137-libxmu6_2%3a1.1.2-2+b3_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2+b3) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../138-libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../139-libxaw7_2%3a1.0.13-1+b2_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1+b2) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../140-libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../141-libzzip-0-13_0.13.62-3.2_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.62-3.2) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../142-mpi-default-dev_1.13_amd64.deb ... Unpacking mpi-default-dev (1.13) ... Selecting previously unselected package t1utils. Preparing to unpack .../143-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../144-texlive-binaries_2019.20190605.51237-3_amd64.deb ... Unpacking texlive-binaries (2019.20190605.51237-3) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../145-xdg-utils_1.1.3-1_all.deb ... Unpacking xdg-utils (1.1.3-1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../146-texlive-base_2019.20200218-1_all.deb ... Unpacking texlive-base (2019.20200218-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../147-texlive-latex-base_2019.20200218-1_all.deb ... Unpacking texlive-latex-base (2019.20200218-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../148-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libgraphite2-3:amd64 (1.3.13-11) ... Setting up liblcms2-2:amd64 (2.9-4) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libxcb1:amd64 (1.13.1-5) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libtexlua53:amd64 (2019.20190605.51237-3) ... Setting up libxcb-render0:amd64 (1.13.1-5) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up libutf8proc2:amd64 (2.4.0-2) ... Setting up libtexluajit2:amd64 (2019.20190605.51237-3) ... Setting up libdebhelper-perl (12.9) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up x11-common (1:7.7+20) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up libxcb-shm0:amd64 (1.13.1-5) ... Setting up libzzip-0-13:amd64 (0.13.62-3.2) ... Setting up file (1:5.38-4) ... Setting up fonts-urw-base35 (20170801.1-3) ... Setting up libutf8proc-dev:amd64 (2.4.0-2) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libicu63:amd64 (63.2-2) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libx11-data (2:1.6.8-1) ... Setting up libjbig2dec0:amd64 (0.17-1) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libteckit0:amd64 (2.5.8+ds2-5) ... Setting up libavahi-common-data:amd64 (0.7-5) ... Setting up libdbus-1-3:amd64 (1.12.16-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up t1utils (1.41-3) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpng16-16:amd64 (1.6.37-2) ... Setting up libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libevent-2.1-7:amd64 (2.1.11-stable-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:amd64 (0.6.1-2+b1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libfile-libmagic-perl (1.16-1+b2) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libltdl7:amd64 (2.4.6-13) ... Setting up libkpathsea6:amd64 (2019.20190605.51237-3) ... Setting up libgfortran5:amd64 (10-20200222-1) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.86-1) ... Setting up openmpi-common (4.0.2-5) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libopenjp2-7:amd64 (2.3.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.3.1-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.10+dfsg-3) ... Setting up xdg-utils (1.1.3-1) ... Setting up chrpath (0.16-2+b1) ... Setting up libsynctex2:amd64 (2019.20190605.51237-3) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libgs9-common (9.50~dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libtool (2.4.6-13) ... Setting up libavahi-common3:amd64 (0.7-5) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgfortran-9-dev:amd64 (9.2.1-30) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Setting up m4 (1.4.18-4) ... Setting up libnuma-dev:amd64 (2.0.12-1+b1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libxnvctrl0:amd64 (440.59-1) ... Setting up libptexenc1:amd64 (2019.20190605.51237-3) ... Setting up libfreetype6:amd64 (2.10.1-2) ... Setting up libevent-dev (2.1.11-stable-1) ... Setting up libhwloc15:amd64 (2.1.0+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-4) ... Setting up libharfbuzz0b:amd64 (2.6.4-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-5) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libibverbs1:amd64 (28.0-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libharfbuzz-icu0:amd64 (2.6.4-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up gfortran-9 (9.2.1-30) ... Setting up ibverbs-providers:amd64 (28.0-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up openssh-client (1:8.2p1-3) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libhwloc-plugins:amd64 (2.1.0+dfsg-3) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.13) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up libltdl-dev:amd64 (2.4.6-13) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libcups2:amd64 (2.3.1-11) ... Setting up libhwloc-dev:amd64 (2.1.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.13.1-2+b1) ... Setting up librdmacm1:amd64 (28.0-1) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libgs9:amd64 (9.50~dfsg-5) ... Setting up libpmix2:amd64 (3.1.4-1+b1) ... Setting up po-debconf (1.0.21) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libibverbs-dev:amd64 (28.0-1) ... Setting up ghostscript (9.50~dfsg-5) ... Setting up libcairo2:amd64 (1.16.0-4) ... Setting up texlive-binaries (2019.20190605.51237-3) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2019.20200218-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up libfabric1 (1.6.2-3+b1) ... Setting up libopenmpi3:amd64 (4.0.2-5) ... Setting up texlive-latex-base (2019.20200218-1) ... Setting up openmpi-bin (4.0.2-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.0.2-5) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up debhelper (12.9) ... Setting up dh-fortran-mod (0.15) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... Processing triggers for tex-common (6.13) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 mips64el ppc64el s390x alpha ia64 sparc64 kfreebsd-amd64 ppc64 riscv64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 chrpath_0.16-2+b1 clang-9_1:9.0.1-8 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-fortran-mod_0.15 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-6 fonts-urw-base35_20170801.1-3 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1 gfortran-9_9.2.1-30 ghostscript_9.50~dfsg-5 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 ibverbs-providers_28.0-1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libavahi-client3_0.7-5 libavahi-common-data_0.7-5 libavahi-common3_0.7-5 libbinutils_2.34-3 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.1+b1 libcbor0_0.5.0+dfsg-2 libcc1-0_10-20200222-1 libclang-common-9-dev_1:9.0.1-8 libclang-cpp9_1:9.0.1-8 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libcups2_2.3.1-11 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.16-2 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfabric1_1.6.2-3+b1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfido2-1_1.3.1-1 libfile-libmagic-perl_1.16-1+b2 libfile-stripnondeterminism-perl_1.6.3-2 libfontconfig1_2.13.1-2+b1 libfreetype6_2.10.1-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-30 libgfortran5_10-20200222-1 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libgraphite2-3_1.3.13-11 libgs9_9.50~dfsg-5 libgs9-common_9.50~dfsg-5 libgssapi-krb5-2_1.17-6 libharfbuzz-icu0_2.6.4-1 libharfbuzz0b_2.6.4-1 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.1.0+dfsg-3 libhwloc-plugins_2.1.0+dfsg-3 libhwloc15_2.1.0+dfsg-3 libibverbs-dev_28.0-1 libibverbs1_28.0-1 libice6_2:1.0.9-2 libicu63_63.2-2 libidn11_1.33-2.2 libidn2-0_2.2.0-2 libijs-0.35_0.35-15 libisl22_0.22.1-1 libitm1_10-20200222-1 libjbig0_2.1-3.1+b2 libjbig2dec0_0.17-1 libjpeg62-turbo_1:1.5.2-2+b1 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkpathsea6_2019.20190605.51237-3 libkrb5-3_1.17-6 libkrb5support0_1.17-6 liblcms2-2_2.9-4 libllvm9_1:9.0.1-8 liblsan0_10-20200222-1 libltdl-dev_2.4.6-13 libltdl7_2.4.6-13 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-29 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnl-3-200_3.4.0-1+b1 libnl-3-dev_3.4.0-1+b1 libnl-route-3-200_3.4.0-1+b1 libnl-route-3-dev_3.4.0-1+b1 libnuma-dev_2.0.12-1+b1 libnuma1_2.0.12-1+b1 libobjc-8-dev_8.3.0-29 libobjc-9-dev_9.2.1-30 libobjc4_10-20200222-1 libomp-9-dev_1:9.0.1-8 libomp5-9_1:9.0.1-8 libopenjp2-7_2.3.1-1 libopenmpi-dev_4.0.2-5 libopenmpi3_4.0.2-5 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpaper-utils_1.1.28+b1 libpaper1_1.1.28+b1 libpciaccess0_0.14-1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpixman-1-0_0.36.0-1 libpmix2_3.1.4-1+b1 libpng16-16_1.6.37-2 libpsm-infinipath1_3.3+20.604758e7-6+b1 libpsm2-2_11.2.86-1 libptexenc1_2019.20190605.51237-3 libquadmath0_10-20200222-1 librdmacm1_28.0-1 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 libsub-override-perl_0.09-2 libsynctex2_2019.20190605.51237-3 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libteckit0_2.5.8+ds2-5 libtexlua53_2019.20190605.51237-3 libtexluajit2_2019.20190605.51237-3 libtiff5_4.1.0+git191117-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libutf8proc-dev_2.4.0-2 libutf8proc2_2.4.0-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2+b1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.13.1-5 libxcb-shm0_1.13.1-5 libxcb1_1.13.1-5 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.10+dfsg-3 libxmu6_2:1.1.2-2+b3 libxnvctrl0_440.59-1 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1+b3 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3 libzzip-0-13_0.13.62-3.2 linux-libc-dev_5.4.19-1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-2 mount_2.34-0.1 mpi-default-dev_1.13 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 ocl-icd-libopencl1_2.2.12-3 openmpi-bin_4.0.2-5 openmpi-common_4.0.2-5 openssh-client_1:8.2p1-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 poppler-data_0.4.9-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 t1utils_1.41-3 tar_1.30+dfsg-6+b1 tex-common_6.13 texlive-base_2019.20200218-1 texlive-binaries_2019.20190605.51237-3 texlive-latex-base_2019.20200218-1 tzdata_2019c-3 ucf_3.0038+nmu1 util-linux_2.34-0.1 x11-common_1:7.7+20 xdg-utils_1.1.3-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pnetcdf Binary: libpnetcdf-dev, pnetcdf-bin, libpnetcdf0d Architecture: amd64 arm64 mips64el ppc64el s390x alpha ia64 sparc64 kfreebsd-amd64 ppc64 riscv64 Version: 1.12.1-1 Maintainer: Alastair McKinstry Homepage: https://trac.mcs.anl.gov/projects/parallel-netcdf Standards-Version: 4.4.1.0 Vcs-Browser: https://salsa.debian.org:/science-team/pnetcdf.git Vcs-Git: https://salsa.debian.org:/science-team/pnetcdf.git Build-Depends: debhelper-compat (= 12), gfortran | fortran-compiler, dh-fortran-mod, mpi-default-dev, libutf8proc-dev, chrpath, texlive-latex-base, ghostscript Package-List: libpnetcdf-dev deb libdevel optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,sparc64,kfreebsd-amd64,ppc64,riscv64 libpnetcdf0d deb libs optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,sparc64,kfreebsd-amd64,ppc64,riscv64 pnetcdf-bin deb science optional arch=amd64,arm64,mips64el,ppc64el,s390x,alpha,ia64,sparc64,kfreebsd-amd64,ppc64,riscv64 Checksums-Sha1: 0599c8b98689ea8468fa85fe633608f56c2e8579 1517588 pnetcdf_1.12.1.orig.tar.xz d18da4180630bf2fe20305cd5493d795ed7fec20 6316 pnetcdf_1.12.1-1.debian.tar.xz Checksums-Sha256: f1f4c3dccca409c7d9e946ada17ee742410674e075e8527b678153aba3da8361 1517588 pnetcdf_1.12.1.orig.tar.xz cafd163d0403bb6bc4a2baac1b636dd6ee90c751f73129eca99e1946b8bdb67e 6316 pnetcdf_1.12.1-1.debian.tar.xz Files: 5a627f0a67e6a5b1045acceaa7a7a1d1 1517588 pnetcdf_1.12.1.orig.tar.xz 4eb60bb3843648ab6279aaf1e997e9d9 6316 pnetcdf_1.12.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEgjg86RZbNHx4cIGiy+a7Tl2a06UFAl301AMACgkQy+a7Tl2a 06WPGhAAplwYeIXTHR7LO+IFwOcqiTGd8fqdOzx6Dti4qs1A42ujNCdf581y/OSR T0epNrCVliofJqWgYibDczzCgpR5GdMSlly4Widle9x00sbyu+L8jVa1SdpwmUQ+ PIjGDZHvxLiIhoUgQi2QAmUo73sa02jWPcJ0icdKjS7N+CTCt4+V20zbygYhz/7f tEMef6X9hELRraDTLiNJ3uCtqi+Qd3ylP0kj+vAoraipA9u4TF/jij8UJLbHBQFR 3YTNlNuEGOc6agWxfZiDedfYC4CNxEEapkYYvPzdwsv+svoTRQsKa2pPwt+bijTL kE/5YM6yDNiG4pHKFEtDuPyx2wnyFhTZuGv0cUYb/PPOJ4jNOkaV9draIzFI0EwO wXrW9Uoi2umraAIyCaSiOfS9J0V27pAHyQdblAK/CTrSLwcL84YblAAT2iQfyv6I 7ASI2Kwy9lr86QM5wyIOg1XcfC/q/jde0C8wI1zOF3LnLztRyY/A26TkmeEzEOZy p5ZbRHZXtL1Ay3bkwNfoMFIGmakeOU5FeIX9vwhdeCXYUtLnvxHSJVlZXPibQae9 oaZ45WC3omjn4RJFLBvKXcAgJHJEhwCGl0h+GqjKCFpwlYniCg2A5A2pxIprKiaz hvxwKNI0d0t/C3numODnv5ry2qKO7SFYyqLsSowcWTm89XzVCLM= =f8Vn -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 14 12:22:27 2019 UTC gpgv: using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pnetcdf_1.12.1-1.dsc dpkg-source: info: extracting pnetcdf in /<> dpkg-source: info: unpacking pnetcdf_1.12.1.orig.tar.xz dpkg-source: info: unpacking pnetcdf_1.12.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable-erange-fill-test.patch dpkg-source: info: applying manpages.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-ab343772-cd65-4a4a-a3c7-6dd7384f3f0b SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package pnetcdf dpkg-buildpackage: info: source version 1.12.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alastair McKinstry dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with fortran_mod debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf build-* make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libpnetcdf-dev.substvars debian/pnetcdf-bin.substvars debian/libpnetcdf0d.substvars debian/files rm -fr -- debian/libpnetcdf-dev/ debian/tmp/ debian/pnetcdf-bin/ debian/libpnetcdf0d/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with fortran_mod dh_update_autotools_config install -d debian/.debhelper/bucket/files cp -an --reflink=auto scripts/config.guess debian/.debhelper/bucket/files/913077d5113ce99ff97f6b22e232549f2c93241fcd174b00b84af704f2d364fa.tmp mv debian/.debhelper/bucket/files/913077d5113ce99ff97f6b22e232549f2c93241fcd174b00b84af704f2d364fa.tmp debian/.debhelper/bucket/files/913077d5113ce99ff97f6b22e232549f2c93241fcd174b00b84af704f2d364fa cp -f /usr/share/misc/config.guess ./scripts/config.guess cp -an --reflink=auto scripts/config.sub debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472.tmp mv debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472.tmp debian/.debhelper/bucket/files/52d7418817df4a0bd139446cf014f9dfd5bb3406a95c3109ca6fd578068be472 cp -f /usr/share/misc/config.sub ./scripts/config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './scripts'. libtoolize: copying file './scripts/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found sh: 1: git: not found configure.ac:386: installing './scripts/ar-lib' configure.ac:307: installing './scripts/compile' configure.ac:44: installing './scripts/install-sh' configure.ac:44: installing './scripts/missing' benchmarks/C/Makefile.am: installing './scripts/depcomp' parallel-tests: installing './scripts/test-driver' test/testcases/Makefile.am:85: warning: variable 'nodist_erange_fill_SOURCES' is defined but no program or test/testcases/Makefile.am:85: library has 'erange_fill' as canonical name (possible typo) find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure --builddirectory=build-static install -d build-static cd build-static && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for rm... yes checking for gawk... (cached) mawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking for mpicc... /usr/bin/mpicc checking for gcc... /usr/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/mpicc accepts -g... yes checking for /usr/bin/mpicc option to accept ISO C89... none needed checking whether /usr/bin/mpicc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /usr/bin/mpicc... none checking how to run the C preprocessor... /usr/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking MPI C compiler base... CLANG checking MPI Standard version implemented... 3.1 checking whether MPICH_VERSION is declared... no checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... yes checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... OpenMPI 4.0.2 checking whether /usr/bin/mpicc is a wrapper of a C++ compiler... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... yes checking for /usr/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicc static flag -static works... no checking if /usr/bin/mpicc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for mpicxx... /usr/bin/mpicxx checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/mpicxx accepts -g... yes checking dependency style of /usr/bin/mpicxx... none checking how to run the C++ preprocessor... /usr/bin/mpicxx -E checking for ld used by /usr/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicxx static flag -static works... no checking if /usr/bin/mpicxx supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking for mpif77... /usr/bin/mpif77 checking for mpif90... /usr/bin/mpif90 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif77 option to produce PIC... -fPIC checking if /usr/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/bin/mpif77 static flag -static works... no checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif77 ... -v checking for Fortran 77 libraries of /usr/bin/mpif77 ... -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lquadmath -lpthread checking whether /usr/bin/mpif77 is a valid MPI compiler... yes checking whether we are using the GNU Fortran compiler... yes checking whether /usr/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif90 option to produce PIC... -fPIC checking if /usr/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/bin/mpif90 static flag -static works... no checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif90 ... -v checking for Fortran libraries of /usr/bin/mpif90 ... -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lquadmath -lpthread checking whether mpi.mod is available... yes checking whether /usr/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if MPI Fortran 90 compiler is NAG Fortran... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... no checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... no checking whether MPI_COMBINER_STRUCT_INTEGER is defined... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... /usr/bin/latex checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /usr/bin/mpiexec checking for clang... /usr/bin/mpicc checking C compiler for serial utility programs... /usr/bin/mpicc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: cannot remove 'libtoolT': No such file or directory ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - no Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/bin/mpicc MPICXX = /usr/bin/mpicxx MPIF77 = /usr/bin/mpif77 MPIF90 = /usr/bin/mpif90 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 CFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CXXFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security FFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong FCFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong LDFLAGS = -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ OMPI_CFLAGS=" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" OMPI_CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" \ OMPI_FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong" OMPI_FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong" \ OMPI_LDFLAGS="-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed" \ OMPI_FC=gfortran FC=gfortran dh_auto_configure --builddirectory=build-shared -- \ CFLAGS=" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" \ FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" \ LDFLAGS="-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" \ OMPI_CFLAGS=" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" OMPI_CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" \ OMPI_FCFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" OMPI_FFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" \ OMPI_LDFLAGS="-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" \ OMPI_FC=gfortran FC=gfortran install -d build-shared cd build-shared && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking "CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" "FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" "LDFLAGS=-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" "OMPI_CFLAGS= -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "OMPI_CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g" "OMPI_FCFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" "OMPI_FFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g" "OMPI_LDFLAGS=-Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g" OMPI_FC=gfortran FC=gfortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for rm... yes checking for gawk... (cached) mawk checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for sed handling option -i ... /bin/sed -i'' checking for mpicc... /usr/bin/mpicc checking for gcc... /usr/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/bin/mpicc accepts -g... yes checking for /usr/bin/mpicc option to accept ISO C89... none needed checking whether /usr/bin/mpicc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of /usr/bin/mpicc... none checking how to run the C preprocessor... /usr/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking MPI C compiler base... CLANG checking MPI Standard version implemented... 3.1 checking whether MPICH_VERSION is declared... no checking whether MPICH2_VERSION is declared... no checking whether OMPI_MAJOR_VERSION is declared... yes checking whether MVAPICH2_VERSION is declared... no checking MPI vendor... OpenMPI 4.0.2 checking whether /usr/bin/mpicc is a wrapper of a C++ compiler... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /usr/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/bin/mpicc supports -fno-rtti -fno-exceptions... yes checking for /usr/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicc static flag -static works... no checking if /usr/bin/mpicc supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for mpicxx... /usr/bin/mpicxx checking whether we are using the GNU C++ compiler... yes checking whether /usr/bin/mpicxx accepts -g... yes checking dependency style of /usr/bin/mpicxx... none checking how to run the C++ preprocessor... /usr/bin/mpicxx -E checking for ld used by /usr/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/bin/mpicxx static flag -static works... no checking if /usr/bin/mpicxx supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking for mpif77... /usr/bin/mpif77 checking for mpif90... /usr/bin/mpif90 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif77 option to produce PIC... -fPIC checking if /usr/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/bin/mpif77 static flag -static works... no checking if /usr/bin/mpif77 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif77 ... -v checking for Fortran 77 libraries of /usr/bin/mpif77 ... -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lquadmath checking whether /usr/bin/mpif77 is a valid MPI compiler... yes checking whether we are using the GNU Fortran compiler... yes checking whether /usr/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /usr/bin/mpif90 option to produce PIC... -fPIC checking if /usr/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/bin/mpif90 static flag -static works... no checking if /usr/bin/mpif90 supports -c -o file.o... rm: cannot remove 'conftest*': No such file or directory yes checking if /usr/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/bin/mpif90 ... -v checking for Fortran libraries of /usr/bin/mpif90 ... -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. -lgfortran -lm -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lquadmath checking whether mpi.mod is available... no checking whether /usr/bin/mpif90 is a valid MPI compiler... configure: WARNING: Fortran module mpi.mod is not available or invalid. Use mpif.h instead. yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if MPI Fortran 90 compiler is NAG Fortran... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking whether strdup is declared... yes checking for strdup... yes checking whether strerror is declared... yes checking for strerror... yes checking whether access is declared... yes checking for access... yes checking whether unlink is declared... yes checking for unlink... yes checking whether strcasecmp is declared... yes checking for strcasecmp... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking whether tsearch is declared... yes checking for tsearch... yes checking whether tdelete is declared... yes checking for tdelete... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking whether MPI_COMBINER_HVECTOR_INTEGER is defined... no checking whether MPI_COMBINER_HINDEXED_INTEGER is defined... no checking whether MPI_COMBINER_STRUCT_INTEGER is defined... no checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... /usr/bin/latex checking for dvipdf... /usr/bin/dvipdf checking for mpiexec... /usr/bin/mpiexec checking for clang... /usr/bin/mpicc checking C compiler for serial utility programs... /usr/bin/mpicc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncadios/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/adios/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/adios/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: cannot remove 'libtoolT': No such file or directory ------------------------------------------------------------------------------ PnetCDF Version 1.12.1 Features: Build static libraries - yes Build shared libraries - no Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/bin/mpicc MPICXX = /usr/bin/mpicxx MPIF77 = /usr/bin/mpif77 MPIF90 = /usr/bin/mpif90 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 CFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g CXXFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g FFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g FCFLAGS = -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -fPIC -g LDFLAGS = -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -g Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ make[1]: Leaving directory '/<>' rm -f debian/libpnetcdf-dev.debhelper.log debian/libpnetcdf0d.debhelper.log debian/pnetcdf-bin.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -C build-static make[2]: Entering directory '/<>/build-static' Making all in src make[3]: Entering directory '/<>/build-static/src' Making all in include make[4]: Entering directory '/<>/build-static/src/include' /usr/bin/make all-am make[5]: Entering directory '/<>/build-static/src/include' make[5]: Leaving directory '/<>/build-static/src/include' make[4]: Leaving directory '/<>/build-static/src/include' Making all in dispatchers make[4]: Entering directory '/<>/build-static/src/dispatchers' m4 -DPNETCDF -I../../../m4 ../../../src/dispatchers/attr_getput.m4 >attr_getput.c m4 -DPNETCDF -I../../../m4 ../../../src/dispatchers/var_getput.m4 >var_getput.c /usr/bin/make all-am make[5]: Entering directory '/<>/build-static/src/dispatchers' /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o lib_version.lo ../../../src/dispatchers/lib_version.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/lib_version.c -o lib_version.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o file.lo ../../../src/dispatchers/file.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/file.c -o file.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dimension.lo ../../../src/dispatchers/dimension.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/dimension.c -o dimension.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o variable.lo ../../../src/dispatchers/variable.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/variable.c -o variable.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o attribute.lo ../../../src/dispatchers/attribute.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/attribute.c -o attribute.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o error_codes.lo ../../../src/dispatchers/error_codes.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../src/dispatchers/error_codes.c -o error_codes.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o attr_getput.lo attr_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c attr_getput.c -o attr_getput.o /bin/bash ../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o var_getput.lo var_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../src/dispatchers -I../../src/include -I../../../src/include -I../../src/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c var_getput.c -o var_getput.o /bin/bash ../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libdispatchers.la lib_version.lo file.lo dimension.lo variable.lo attribute.lo error_codes.lo attr_getput.lo var_getput.lo libtool: link: ar cr .libs/libdispatchers.a lib_version.o file.o dimension.o variable.o attribute.o error_codes.o attr_getput.o var_getput.o libtool: link: ranlib .libs/libdispatchers.a libtool: link: ( cd ".libs" && rm -f "libdispatchers.la" && ln -s "../libdispatchers.la" "libdispatchers.la" ) make[5]: Leaving directory '/<>/build-static/src/dispatchers' make[4]: Leaving directory '/<>/build-static/src/dispatchers' Making all in drivers make[4]: Entering directory '/<>/build-static/src/drivers' Making all in include make[5]: Entering directory '/<>/build-static/src/drivers/include' m4 -DPNETCDF -I../../../../m4 ../../../../src/drivers/include/ncx_h.m4 >ncx.h /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/drivers/include' make[6]: Nothing to be done for 'all-am'. make[6]: Leaving directory '/<>/build-static/src/drivers/include' make[5]: Leaving directory '/<>/build-static/src/drivers/include' Making all in common make[5]: Entering directory '/<>/build-static/src/drivers/common' m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/common/ncx.m4 >ncx.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/common/convert_swap.m4 >convert_swap.c /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/drivers/common' /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utf8proc.lo ../../../../src/drivers/common/utf8proc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/utf8proc.c -o utf8proc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mem_alloc.lo ../../../../src/drivers/common/mem_alloc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/mem_alloc.c -o mem_alloc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dtype_decode.lo ../../../../src/drivers/common/dtype_decode.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/dtype_decode.c -o dtype_decode.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o create_imaptype.lo ../../../../src/drivers/common/create_imaptype.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/create_imaptype.c -o create_imaptype.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o error_mpi2nc.lo ../../../../src/drivers/common/error_mpi2nc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/error_mpi2nc.c -o error_mpi2nc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o check_name.lo ../../../../src/drivers/common/check_name.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/check_name.c -o check_name.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pack_unpack.lo ../../../../src/drivers/common/pack_unpack.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/pack_unpack.c -o pack_unpack.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.lo ../../../../src/drivers/common/utils.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/utils.c -o utils.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o error_posix2nc.lo ../../../../src/drivers/common/error_posix2nc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/error_posix2nc.c -o error_posix2nc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hash_map.lo ../../../../src/drivers/common/hash_map.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/common/hash_map.c -o hash_map.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -c -o ncx.lo ncx.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -c ncx.c -o ncx.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o convert_swap.lo convert_swap.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/common -I../../../src/include -I../../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c convert_swap.c -o convert_swap.o /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libcommon.la utf8proc.lo mem_alloc.lo dtype_decode.lo create_imaptype.lo error_mpi2nc.lo check_name.lo pack_unpack.lo utils.lo error_posix2nc.lo hash_map.lo ncx.lo convert_swap.lo libtool: link: ar cr .libs/libcommon.a utf8proc.o mem_alloc.o dtype_decode.o create_imaptype.o error_mpi2nc.o check_name.o pack_unpack.o utils.o error_posix2nc.o hash_map.o ncx.o convert_swap.o libtool: link: ranlib .libs/libcommon.a libtool: link: ( cd ".libs" && rm -f "libcommon.la" && ln -s "../libcommon.la" "libcommon.la" ) make[6]: Leaving directory '/<>/build-static/src/drivers/common' make[5]: Leaving directory '/<>/build-static/src/drivers/common' Making all in ncmpio make[5]: Entering directory '/<>/build-static/src/drivers/ncmpio' m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_getput.m4 >ncmpio_getput.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_i_getput.m4 >ncmpio_i_getput.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_varn.m4 >ncmpio_varn.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_i_varn.m4 >ncmpio_i_varn.c m4 -DPNETCDF -I../../../../m4 -DERANGE_FILL ../../../../src/drivers/ncmpio/ncmpio_attr.m4 >ncmpio_attr.c /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/drivers/ncmpio' /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_driver.lo ../../../../src/drivers/ncmpio/ncmpio_driver.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_driver.c -o ncmpio_driver.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_create.lo ../../../../src/drivers/ncmpio/ncmpio_create.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_create.c -o ncmpio_create.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_open.lo ../../../../src/drivers/ncmpio/ncmpio_open.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_open.c -o ncmpio_open.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_enddef.lo ../../../../src/drivers/ncmpio/ncmpio_enddef.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_enddef.c -o ncmpio_enddef.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_close.lo ../../../../src/drivers/ncmpio/ncmpio_close.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_close.c -o ncmpio_close.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_sync.lo ../../../../src/drivers/ncmpio/ncmpio_sync.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_sync.c -o ncmpio_sync.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_file_misc.lo ../../../../src/drivers/ncmpio/ncmpio_file_misc.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_file_misc.c -o ncmpio_file_misc.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_header_get.lo ../../../../src/drivers/ncmpio/ncmpio_header_get.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_header_get.c -o ncmpio_header_get.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_header_put.lo ../../../../src/drivers/ncmpio/ncmpio_header_put.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_header_put.c -o ncmpio_header_put.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_dim.lo ../../../../src/drivers/ncmpio/ncmpio_dim.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_dim.c -o ncmpio_dim.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_var.lo ../../../../src/drivers/ncmpio/ncmpio_var.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_var.c -o ncmpio_var.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_bput.lo ../../../../src/drivers/ncmpio/ncmpio_bput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_bput.c -o ncmpio_bput.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_filetype.lo ../../../../src/drivers/ncmpio/ncmpio_filetype.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_filetype.c -o ncmpio_filetype.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_wait.lo ../../../../src/drivers/ncmpio/ncmpio_wait.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_wait.c -o ncmpio_wait.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_vard.lo ../../../../src/drivers/ncmpio/ncmpio_vard.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_vard.c -o ncmpio_vard.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_fill.lo ../../../../src/drivers/ncmpio/ncmpio_fill.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_fill.c -o ncmpio_fill.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_util.lo ../../../../src/drivers/ncmpio/ncmpio_util.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_util.c -o ncmpio_util.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_hash_func.lo ../../../../src/drivers/ncmpio/ncmpio_hash_func.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_hash_func.c -o ncmpio_hash_func.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_file_io.lo ../../../../src/drivers/ncmpio/ncmpio_file_io.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/drivers/ncmpio/ncmpio_file_io.c -o ncmpio_file_io.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_getput.lo ncmpio_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_getput.c -o ncmpio_getput.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_i_getput.lo ncmpio_i_getput.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_i_getput.c -o ncmpio_i_getput.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_varn.lo ncmpio_varn.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_varn.c -o ncmpio_varn.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_i_varn.lo ncmpio_i_varn.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_i_varn.c -o ncmpio_i_varn.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpio_attr.lo ncmpio_attr.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/drivers/ncmpio -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../../src/drivers/include -I../../../src/drivers/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ncmpio_attr.c -o ncmpio_attr.o /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libncmpio.la ncmpio_driver.lo ncmpio_create.lo ncmpio_open.lo ncmpio_enddef.lo ncmpio_close.lo ncmpio_sync.lo ncmpio_file_misc.lo ncmpio_header_get.lo ncmpio_header_put.lo ncmpio_dim.lo ncmpio_var.lo ncmpio_bput.lo ncmpio_filetype.lo ncmpio_wait.lo ncmpio_vard.lo ncmpio_fill.lo ncmpio_util.lo ncmpio_hash_func.lo ncmpio_file_io.lo ncmpio_getput.lo ncmpio_i_getput.lo ncmpio_varn.lo ncmpio_i_varn.lo ncmpio_attr.lo libtool: link: ar cr .libs/libncmpio.a ncmpio_driver.o ncmpio_create.o ncmpio_open.o ncmpio_enddef.o ncmpio_close.o ncmpio_sync.o ncmpio_file_misc.o ncmpio_header_get.o ncmpio_header_put.o ncmpio_dim.o ncmpio_var.o ncmpio_bput.o ncmpio_filetype.o ncmpio_wait.o ncmpio_vard.o ncmpio_fill.o ncmpio_util.o ncmpio_hash_func.o ncmpio_file_io.o ncmpio_getput.o ncmpio_i_getput.o ncmpio_varn.o ncmpio_i_varn.o ncmpio_attr.o libtool: link: ranlib .libs/libncmpio.a libtool: link: ( cd ".libs" && rm -f "libncmpio.la" && ln -s "../libncmpio.la" "libncmpio.la" ) make[6]: Leaving directory '/<>/build-static/src/drivers/ncmpio' make[5]: Leaving directory '/<>/build-static/src/drivers/ncmpio' make[5]: Entering directory '/<>/build-static/src/drivers' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/build-static/src/drivers' make[4]: Leaving directory '/<>/build-static/src/drivers' Making all in binding make[4]: Entering directory '/<>/build-static/src/binding' Making all in cxx make[5]: Entering directory '/<>/build-static/src/binding/cxx' cat ../../../../src/binding/cxx/pnetcdf.in >pnetcdf set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \ /bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ../../../../src/binding/cxx/$i >> pnetcdf ; \ ) ; done /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/binding/cxx' /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpi_notyet.lo ../../../../src/binding/cxx/ncmpi_notyet.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpi_notyet.cpp -o ncmpi_notyet.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiCheck.lo ../../../../src/binding/cxx/ncmpiCheck.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiCheck.cpp -o ncmpiCheck.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiType.lo ../../../../src/binding/cxx/ncmpiType.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiType.cpp -o ncmpiType.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiAtt.lo ../../../../src/binding/cxx/ncmpiAtt.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiAtt.cpp -o ncmpiAtt.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiEnumType.lo ../../../../src/binding/cxx/ncmpiEnumType.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiEnumType.cpp -o ncmpiEnumType.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiGroupAtt.lo ../../../../src/binding/cxx/ncmpiGroupAtt.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiGroupAtt.cpp -o ncmpiGroupAtt.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiGroup.lo ../../../../src/binding/cxx/ncmpiGroup.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiGroup.cpp -o ncmpiGroup.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiByte.lo ../../../../src/binding/cxx/ncmpiByte.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiByte.cpp -o ncmpiByte.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiChar.lo ../../../../src/binding/cxx/ncmpiChar.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiChar.cpp -o ncmpiChar.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiCompoundType.lo ../../../../src/binding/cxx/ncmpiCompoundType.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiCompoundType.cpp -o ncmpiCompoundType.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiDouble.lo ../../../../src/binding/cxx/ncmpiDouble.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiDouble.cpp -o ncmpiDouble.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiFloat.lo ../../../../src/binding/cxx/ncmpiFloat.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiFloat.cpp -o ncmpiFloat.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiInt.lo ../../../../src/binding/cxx/ncmpiInt.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiInt.cpp -o ncmpiInt.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiInt64.lo ../../../../src/binding/cxx/ncmpiInt64.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiInt64.cpp -o ncmpiInt64.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiOpaqueType.lo ../../../../src/binding/cxx/ncmpiOpaqueType.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiOpaqueType.cpp -o ncmpiOpaqueType.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiShort.lo ../../../../src/binding/cxx/ncmpiShort.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiShort.cpp -o ncmpiShort.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiUbyte.lo ../../../../src/binding/cxx/ncmpiUbyte.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiUbyte.cpp -o ncmpiUbyte.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiUint.lo ../../../../src/binding/cxx/ncmpiUint.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiUint.cpp -o ncmpiUint.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiUint64.lo ../../../../src/binding/cxx/ncmpiUint64.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiUint64.cpp -o ncmpiUint64.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiUshort.lo ../../../../src/binding/cxx/ncmpiUshort.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiUshort.cpp -o ncmpiUshort.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiException.lo ../../../../src/binding/cxx/ncmpiException.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiException.cpp -o ncmpiException.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiDim.lo ../../../../src/binding/cxx/ncmpiDim.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiDim.cpp -o ncmpiDim.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiFile.lo ../../../../src/binding/cxx/ncmpiFile.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiFile.cpp -o ncmpiFile.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiVarAtt.lo ../../../../src/binding/cxx/ncmpiVarAtt.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiVarAtt.cpp -o ncmpiVarAtt.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiVar.lo ../../../../src/binding/cxx/ncmpiVar.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiVar.cpp -o ncmpiVar.o /bin/bash ../../../libtool --tag=CXX --mode=compile /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpiVlenType.lo ../../../../src/binding/cxx/ncmpiVlenType.cpp libtool: compile: /usr/bin/mpicxx -DHAVE_CONFIG_H -I. -I../../../../src/binding/cxx -I../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ../../../../src/binding/cxx/ncmpiVlenType.cpp -o ncmpiVlenType.o /bin/bash ../../../libtool --tag=CXX --mode=link /usr/bin/mpicxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libcxx.la ncmpi_notyet.lo ncmpiCheck.lo ncmpiType.lo ncmpiAtt.lo ncmpiEnumType.lo ncmpiGroupAtt.lo ncmpiGroup.lo ncmpiByte.lo ncmpiChar.lo ncmpiCompoundType.lo ncmpiDouble.lo ncmpiFloat.lo ncmpiInt.lo ncmpiInt64.lo ncmpiOpaqueType.lo ncmpiShort.lo ncmpiUbyte.lo ncmpiUint.lo ncmpiUint64.lo ncmpiUshort.lo ncmpiException.lo ncmpiDim.lo ncmpiFile.lo ncmpiVarAtt.lo ncmpiVar.lo ncmpiVlenType.lo libtool: link: ar cr .libs/libcxx.a ncmpi_notyet.o ncmpiCheck.o ncmpiType.o ncmpiAtt.o ncmpiEnumType.o ncmpiGroupAtt.o ncmpiGroup.o ncmpiByte.o ncmpiChar.o ncmpiCompoundType.o ncmpiDouble.o ncmpiFloat.o ncmpiInt.o ncmpiInt64.o ncmpiOpaqueType.o ncmpiShort.o ncmpiUbyte.o ncmpiUint.o ncmpiUint64.o ncmpiUshort.o ncmpiException.o ncmpiDim.o ncmpiFile.o ncmpiVarAtt.o ncmpiVar.o ncmpiVlenType.o libtool: link: ranlib .libs/libcxx.a libtool: link: ( cd ".libs" && rm -f "libcxx.la" && ln -s "../libcxx.la" "libcxx.la" ) make[6]: Leaving directory '/<>/build-static/src/binding/cxx' make[5]: Leaving directory '/<>/build-static/src/binding/cxx' Making all in f77 make[5]: Entering directory '/<>/build-static/src/binding/f77' /bin/bash ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o strerrorf.lo ../../../../src/binding/f77/strerrorf.f libtool: compile: /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c ../../../../src/binding/f77/strerrorf.f -o strerrorf.o /bin/bash ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o strerrnof.lo ../../../../src/binding/f77/strerrnof.f libtool: compile: /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c ../../../../src/binding/f77/strerrnof.f -o strerrnof.o /bin/bash ../../../libtool --tag=F77 --mode=compile /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o inq_libversf.lo ../../../../src/binding/f77/inq_libversf.f libtool: compile: /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c ../../../../src/binding/f77/inq_libversf.f -o inq_libversf.o rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c ../../../../src/binding/f77/buildiface -infile=../../../src/include/pnetcdf.h -deffile=../../../../src/binding/f77/defs > allf.c /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o issyserrf.lo issyserrf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c issyserrf.c -o issyserrf.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xstrerrorf.lo xstrerrorf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c xstrerrorf.c -o xstrerrorf.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xstrerrnof.lo xstrerrnof.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c xstrerrnof.c -o xstrerrnof.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o xinq_libversf.lo xinq_libversf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c xinq_libversf.c -o xinq_libversf.o /bin/bash ../../../libtool --tag=CC --mode=compile /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o allf.lo allf.c libtool: compile: /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/binding/f77 -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c allf.c -o allf.o /bin/bash ../../../libtool --tag=F77 --mode=link /usr/bin/mpif77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libf77.la strerrorf.lo strerrnof.lo inq_libversf.lo issyserrf.lo xstrerrorf.lo xstrerrnof.lo xinq_libversf.lo allf.lo libtool: link: ar cr .libs/libf77.a strerrorf.o strerrnof.o inq_libversf.o issyserrf.o xstrerrorf.o xstrerrnof.o xinq_libversf.o allf.o libtool: link: ranlib .libs/libf77.a libtool: link: ( cd ".libs" && rm -f "libf77.la" && ln -s "../libf77.la" "libf77.la" ) make[5]: Leaving directory '/<>/build-static/src/binding/f77' Making all in f90 make[5]: Entering directory '/<>/build-static/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_text.m4 >getput_text.fh m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_var.m4 >getput_var.fh m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_varn.m4 >getput_varn.fh m4 -DPNETCDF -DINTENTV=INOUT ../../../../src/binding/f90/getput_vard.m4 >getput_vard.fh /usr/bin/make all-am make[6]: Entering directory '/<>/build-static/src/binding/f90' /bin/bash ../../../libtool --tag=FC --mode=compile /usr/bin/mpif90 -I. -I../../../../src/binding/f90 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o pnetcdf.lo pnetcdf.f90 libtool: compile: /usr/bin/mpif90 -I. -I../../../../src/binding/f90 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c pnetcdf.f90 -o pnetcdf.o /bin/bash ../../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I. -I../../../../src/binding/f90 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libf90.la pnetcdf.lo libtool: link: ar cr .libs/libf90.a pnetcdf.o libtool: link: ranlib .libs/libf90.a libtool: link: ( cd ".libs" && rm -f "libf90.la" && ln -s "../libf90.la" "libf90.la" ) make[6]: Leaving directory '/<>/build-static/src/binding/f90' make[5]: Leaving directory '/<>/build-static/src/binding/f90' make[5]: Entering directory '/<>/build-static/src/binding' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/build-static/src/binding' make[4]: Leaving directory '/<>/build-static/src/binding' Making all in packaging make[4]: Entering directory '/<>/build-static/src/packaging' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/src/packaging' Making all in . make[4]: Entering directory '/<>/build-static/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/build-static/src' Making all in libs make[4]: Entering directory '/<>/build-static/src/libs' /bin/bash ../../libtool --tag=CXX --mode=link /usr/bin/mpicxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 4:1:0 -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o libpnetcdf.la -rpath /usr/lib/x86_64-linux-gnu ../dispatchers/libdispatchers.la ../drivers/common/libcommon.la ../drivers/ncmpio/libncmpio.la ../binding/cxx/libcxx.la ../binding/f77/libf77.la ../binding/f90/libf90.la libtool: link: (cd .libs/libpnetcdf.lax/libdispatchers.a && ar x "/<>/build-static/src/libs/../dispatchers/.libs/libdispatchers.a") libtool: link: (cd .libs/libpnetcdf.lax/libcommon.a && ar x "/<>/build-static/src/libs/../drivers/common/.libs/libcommon.a") libtool: link: (cd .libs/libpnetcdf.lax/libncmpio.a && ar x "/<>/build-static/src/libs/../drivers/ncmpio/.libs/libncmpio.a") libtool: link: (cd .libs/libpnetcdf.lax/libcxx.a && ar x "/<>/build-static/src/libs/../binding/cxx/.libs/libcxx.a") libtool: link: (cd .libs/libpnetcdf.lax/libf77.a && ar x "/<>/build-static/src/libs/../binding/f77/.libs/libf77.a") libtool: link: (cd .libs/libpnetcdf.lax/libf90.a && ar x "/<>/build-static/src/libs/../binding/f90/.libs/libf90.a") libtool: link: ar cr .libs/libpnetcdf.a .libs/libpnetcdf.lax/libdispatchers.a/attr_getput.o .libs/libpnetcdf.lax/libdispatchers.a/attribute.o .libs/libpnetcdf.lax/libdispatchers.a/dimension.o .libs/libpnetcdf.lax/libdispatchers.a/error_codes.o .libs/libpnetcdf.lax/libdispatchers.a/file.o .libs/libpnetcdf.lax/libdispatchers.a/lib_version.o .libs/libpnetcdf.lax/libdispatchers.a/var_getput.o .libs/libpnetcdf.lax/libdispatchers.a/variable.o .libs/libpnetcdf.lax/libcommon.a/check_name.o .libs/libpnetcdf.lax/libcommon.a/convert_swap.o .libs/libpnetcdf.lax/libcommon.a/create_imaptype.o .libs/libpnetcdf.lax/libcommon.a/dtype_decode.o .libs/libpnetcdf.lax/libcommon.a/error_mpi2nc.o .libs/libpnetcdf.lax/libcommon.a/error_posix2nc.o .libs/libpnetcdf.lax/libcommon.a/hash_map.o .libs/libpnetcdf.lax/libcommon.a/mem_alloc.o .libs/libpnetcdf.lax/libcommon.a/ncx.o .libs/libpnetcdf.lax/libcommon.a/pack_unpack.o .libs/libpnetcdf.lax/libcommon.a/utf8proc.o .libs/libpnetcdf.lax/libcommon.a/utils.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_attr.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_bput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_close.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_create.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_dim.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_driver.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_enddef.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_io.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_file_misc.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_filetype.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_fill.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_hash_func.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_get.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_header_put.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_getput.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_i_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_open.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_sync.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_util.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_var.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_vard.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_varn.o .libs/libpnetcdf.lax/libncmpio.a/ncmpio_wait.o .libs/libpnetcdf.lax/libcxx.a/ncmpiAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiByte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiChar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCheck.o .libs/libpnetcdf.lax/libcxx.a/ncmpiCompoundType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDim.o .libs/libpnetcdf.lax/libcxx.a/ncmpiDouble.o .libs/libpnetcdf.lax/libcxx.a/ncmpiEnumType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiException.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFile.o .libs/libpnetcdf.lax/libcxx.a/ncmpiFloat.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroup.o .libs/libpnetcdf.lax/libcxx.a/ncmpiGroupAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiInt64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiOpaqueType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiShort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiType.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUbyte.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUint64.o .libs/libpnetcdf.lax/libcxx.a/ncmpiUshort.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVar.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVarAtt.o .libs/libpnetcdf.lax/libcxx.a/ncmpiVlenType.o .libs/libpnetcdf.lax/libcxx.a/ncmpi_notyet.o .libs/libpnetcdf.lax/libf77.a/allf.o .libs/libpnetcdf.lax/libf77.a/inq_libversf.o .libs/libpnetcdf.lax/libf77.a/issyserrf.o .libs/libpnetcdf.lax/libf77.a/strerrnof.o .libs/libpnetcdf.lax/libf77.a/strerrorf.o .libs/libpnetcdf.lax/libf77.a/xinq_libversf.o .libs/libpnetcdf.lax/libf77.a/xstrerrnof.o .libs/libpnetcdf.lax/libf77.a/xstrerrorf.o .libs/libpnetcdf.lax/libf90.a/pnetcdf.o libtool: link: ranlib .libs/libpnetcdf.a libtool: link: rm -fr .libs/libpnetcdf.lax libtool: link: ( cd ".libs" && rm -f "libpnetcdf.la" && ln -s "../libpnetcdf.la" "libpnetcdf.la" ) make[4]: Leaving directory '/<>/build-static/src/libs' Making all in utils make[4]: Entering directory '/<>/build-static/src/utils' Making all in ncmpigen make[5]: Entering directory '/<>/build-static/src/utils/ncmpigen' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o ../../../../src/utils/ncmpigen/main.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o load.o ../../../../src/utils/ncmpigen/load.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o escapes.o ../../../../src/utils/ncmpigen/escapes.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o getfill.o ../../../../src/utils/ncmpigen/getfill.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o init.o ../../../../src/utils/ncmpigen/init.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o genlib.o ../../../../src/utils/ncmpigen/genlib.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpigen -I../../../src/include -I../../../../src/include -I../../../src/include -I../../../src/drivers/ncmpio -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpigentab.o ../../../../src/utils/ncmpigen/ncmpigentab.c /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o ncmpigen main.o load.o escapes.o getfill.o init.o genlib.o ncmpigentab.o ../../../src/libs/.libs/libpnetcdf.a -lgfortran make[5]: Leaving directory '/<>/build-static/src/utils/ncmpigen' Making all in ncmpidump make[5]: Entering directory '/<>/build-static/src/utils/ncmpidump' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidump -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpidump.o ../../../../src/utils/ncmpidump/ncmpidump.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidump -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vardata.o ../../../../src/utils/ncmpidump/vardata.c /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidump -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dumplib.o ../../../../src/utils/ncmpidump/dumplib.c /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o ncmpidump ncmpidump.o vardata.o dumplib.o ../../../src/libs/.libs/libpnetcdf.a -lgfortran make[5]: Leaving directory '/<>/build-static/src/utils/ncmpidump' Making all in ncmpidiff make[5]: Entering directory '/<>/build-static/src/utils/ncmpidiff' /usr/bin/mpicc -DHAVE_CONFIG_H -I. -I../../../../src/utils/ncmpidiff -I../../../src/include -I../../../../src/include -I../../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncmpidiff.o ../../../../src/utils/ncmpidiff/ncmpidiff.c /bin/bash ../../../libtool --tag=CC --mode=link /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o ncmpidiff ncmpidiff.o ../../../src/libs/libpnetcdf.la libtool: link: /usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o ncmpidiff ncmpidiff.o ../../../src/libs/.libs/libpnetcdf.a -lgfortran /usr/bin/mpicc -I../../../../src/utils/ncvalidator -o cdfdiff ../../../../src/utils/ncmpidiff/cdfdiff.c make[5]: Leaving directory '/<>/build-static/src/utils/ncmpidiff' Making all in ncvalidator make[5]: Entering directory '/<>/build-static/src/utils/ncvalidator' /usr/bin/mpicc -o ncvalidator ../../../../src/utils/ncvalidator/ncvalidator.c make[5]: Leaving directory '/<>/build-static/src/utils/ncvalidator' Making all in pnetcdf_version make[5]: Entering directory '/<>/build-static/src/utils/pnetcdf_version' /usr/bin/mpicc -DMPICC="\"/usr/bin/mpicc\"" -DCFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security\"" -DCONFIGURE_ARGS_CLEAN="\"--build=x86_64-linux-gnu --prefix=/usr --includedir=/usr/include --mandir=/usr/share/man --infodir=/usr/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=/usr/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking\"" -DPNETCDF_VERSION="\"1.12.1\"" -DMPICXX="\"/usr/bin/mpicxx\"" -DCXXFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security\"" -DMPIF77="\"/usr/bin/mpif77 \"" -DFFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong\"" -DMPIF90="\"/usr/bin/mpif90 \"" -DFCFLAGS="\"-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong\"" -o pnetcdf_version ../../../../src/utils/pnetcdf_version/pnetcdf_version.c make[5]: Leaving directory '/<>/build-static/src/utils/pnetcdf_version' Making all in ncoffsets make[5]: Entering directory '/<>/build-static/src/utils/ncoffsets' /usr/bin/mpicc -o ncoffsets ../../../../src/utils/ncoffsets/ncoffsets.c make[5]: Leaving directory '/<>/build-static/src/utils/ncoffsets' make[5]: Entering directory '/<>/build-static/src/utils' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/<>/build-static/src/utils' make[4]: Leaving directory '/<>/build-static/src/utils' make[3]: Leaving directory '/<>/build-static/src' Making all in man make[3]: Entering directory '/<>/build-static/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.12.1 ../../man/pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.12.1 ../../man/pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 m4 -DPNETCDF -DPNETCDF_VERSION=1.12.1 ../../man/pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[3]: Leaving directory '/<>/build-static/man' Making all in examples make[3]: Entering directory '/<>/build-static/examples' Making all in C make[4]: Entering directory '/<>/build-static/examples/C' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/C' Making all in tutorial make[4]: Entering directory '/<>/build-static/examples/tutorial' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/tutorial' Making all in CXX make[4]: Entering directory '/<>/build-static/examples/CXX' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/CXX' Making all in F77 make[4]: Entering directory '/<>/build-static/examples/F77' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/F77' Making all in F90 make[4]: Entering directory '/<>/build-static/examples/F90' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/examples/F90' make[4]: Entering directory '/<>/build-static/examples' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>/build-static/examples' make[3]: Leaving directory '/<>/build-static/examples' Making all in benchmarks make[3]: Entering directory '/<>/build-static/benchmarks' Making all in C make[4]: Entering directory '/<>/build-static/benchmarks/C' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/build-static/benchmarks/C' Making all in FLASH-IO make[4]: Entering directory '/<>/build-static/benchmarks/FLASH-IO' /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o get_mfluid_property.o ../../../benchmarks/FLASH-IO/get_mfluid_property.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o flash_release.o ../../../benchmarks/FLASH-IO/flash_release.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o flash_benchmark_io.o ../../../benchmarks/FLASH-IO/flash_benchmark_io.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o checkpoint_ncmpi_parallel.o ../../../benchmarks/FLASH-IO/checkpoint_ncmpi_parallel.F90 /usr/bin/mpif90 -DHAVE_CONFIG_H -I. -I../../../benchmarks/FLASH-IO -I../../src/include -Wdate-time -D_FORTIFY_SOURCE=2 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o plotfile_ncmpi_parallel.o ../../../benchmarks/FLASH-IO/plotfile_ncmpi_parallel.F90 /bin/bash ../../libtool --tag=FC --mode=link /usr/bin/mpif90 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -L../../src/libs -Wl,-z,relro -Wl,--no-as-needed -lgfortran -Wl,--as-needed -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -lpnetcdf libtool: link: /usr/bin/mpif90 -I../../src/binding/f90 -I../../../benchmarks/FLASH-IO -DN_DIM=3 -DMAXBLOCKS=100 -DIONMAX=13 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wl,-z -Wl,relro -Wl,--no-as-needed -Wl,--as-needed -o flash_benchmark_io get_mfluid_property.o flash_release.o flash_benchmark_io.o checkpoint_ncmpi_parallel.o plotfile_ncmpi_parallel.o -L../../src/libs /<>/build-static/src/libs/.libs/libpnetcdf.a -lgfortran /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(attr_getput.o): relocation R_X86_64_32 against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(attribute.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(dimension.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(error_codes.o): relocation R_X86_64_32 against `.bss' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(file.o): relocation R_X86_64_32S against `.bss' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(var_getput.o): relocation R_X86_64_32 against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(variable.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(check_name.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(error_mpi2nc.o): relocation R_X86_64_32S against `.rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(utf8proc.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(utils.o): relocation R_X86_64_32 against symbol `ompi_mpi_char' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_driver.o): relocation R_X86_64_32 against `.data' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_enddef.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_file_misc.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_fill.o): relocation R_X86_64_32S against `.rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_getput.o): relocation R_X86_64_32S against symbol `ompi_mpi_byte' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_header_get.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_header_put.o): relocation R_X86_64_32 against `.rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_i_getput.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_i_varn.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_open.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_sync.o): relocation R_X86_64_32 against symbol `ompi_mpi_file_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_util.o): relocation R_X86_64_32 against symbol `ompi_mpi_info_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_var.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_vard.o): relocation R_X86_64_32S against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_wait.o): relocation R_X86_64_32 against symbol `ompi_mpi_byte' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(convert_swap.o): relocation R_X86_64_32 against symbol `ompi_mpi_char' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(create_imaptype.o): relocation R_X86_64_32S against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(dtype_decode.o): relocation R_X86_64_32S against symbol `ompi_mpi_datatype_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncx.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_attr.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_bput.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_close.o): relocation R_X86_64_32 against symbol `ompi_mpi_info_null' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_create.o): relocation R_X86_64_32 against symbol `ompi_mpi_int' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_dim.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_file_io.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_filetype.o): relocation R_X86_64_32S against symbol `ompi_mpi_byte' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /<>/build-static/src/libs/.libs/libpnetcdf.a(ncmpio_hash_func.o): relocation R_X86_64_32S against `.rodata' can not be used when making a PIE object; recompile with -fPIE collect2: error: ld returned 1 exit status make[4]: *** [Makefile:725: flash_benchmark_io] Error 1 make[4]: Leaving directory '/<>/build-static/benchmarks/FLASH-IO' make[3]: *** [Makefile:478: all-recursive] Error 1 make[3]: Leaving directory '/<>/build-static/benchmarks' make[2]: *** [Makefile:528: all-recursive] Error 1 make[2]: Leaving directory '/<>/build-static' make[1]: *** [debian/rules:47: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:26: build] Error 2 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-25T12:39:38Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 133528 Build-Time: 150 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 19 Job: pnetcdf_1.12.1-1 Machine Architecture: amd64 Package: pnetcdf Package-Time: 186 Source-Version: 1.12.1-1 Space: 133528 Status: attempted Version: 1.12.1-1 -------------------------------------------------------------------------------- Finished at 2020-02-25T12:39:38Z Build needed 00:03:06, 133528k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 186.768752824s DC-Time-Estimation: 186.768752824 versus expected 1232 (r/m: 5.59639249805863 ; m: 186.768752824)