DC-Build-Header: prime-phylo 1.0.11-8 / 2020-02-25 14:40:52 +0000 DC-Task: type:rebuild-binarch-only source:prime-phylo version:1.0.11-8 chroot:unstable esttime:320 logfile:/tmp/prime-phylo_1.0.11-8_unstable_clang9.log modes:clang9:binarch-only DC-Sbuild-call: su user42 -c 'sbuild -n --arch-any --apt-update -d unstable -v --no-run-lintian --chroot-setup-commands=/tmp/clang9 prime-phylo_1.0.11-8' sbuild (Debian sbuild) 0.78.1 (09 February 2019) on ip-172-31-7-42.eu-central-1.compute.internal +==============================================================================+ | prime-phylo 1.0.11-8 (amd64) Tue, 25 Feb 2020 14:40:52 +0000 | +==============================================================================+ Package: prime-phylo Version: 1.0.11-8 Source Version: 1.0.11-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2633fa11-deb4-4590-a776-7c3ac2053ec8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /tmp/clang9 ----------- + echo 'Entering customization script...' Entering customization script... + CLANG_VERSION=9 + echo 'Install of clang-9' Install of clang-9 + apt-get update Get:1 http://127.0.0.1:12990/debian sid InRelease [142 kB] Get:2 http://127.0.0.1:12990/debian sid/main Sources.diff/Index [27.9 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-0823.32.pdiff [11.0 kB] Get:5 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-1420.34.pdiff [30.2 kB] Get:6 http://127.0.0.1:12990/debian sid/main Sources 2020-02-24-2014.03.pdiff [16.9 kB] Get:7 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0213.11.pdiff [23.2 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:9 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-0823.32.pdiff [15.5 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-1420.34.pdiff [27.5 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-24-2014.03.pdiff [21.6 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0213.11.pdiff [35.0 kB] Get:8 http://127.0.0.1:12990/debian sid/main Sources 2020-02-25-0815.22.pdiff [9222 B] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 Packages 2020-02-25-0815.22.pdiff [20.1 kB] Get:14 http://127.0.0.1:12990/debian sid/main Translation-en [6195 kB] Fetched 6604 kB in 2s (3817 kB/s) Reading package lists... + apt-get install --yes --no-install-recommends --force-yes clang-9 libomp-9-dev libobjc-9-dev Reading package lists... Building dependency tree... The following additional packages will be installed: cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libasan5 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libgcc-9-dev libllvm9 libmpx2 libobjc-8-dev libobjc4 libomp5-9 libstdc++-8-dev libstdc++-9-dev libz3-4 Suggested packages: clang-9-doc gcc-9-locales g++-9-multilib gcc-9-doc gcc-9-multilib libomp-9-doc libstdc++-8-doc libstdc++-9-doc Recommended packages: llvm-9-dev python3 The following NEW packages will be installed: clang-9 gcc-8-base lib32gcc-s1 lib32gcc1 lib32stdc++6 libbsd0 libc6-i386 libclang-common-9-dev libclang-cpp9 libedit2 libgc1c2 libgcc-8-dev libllvm9 libmpx2 libobjc-8-dev libobjc-9-dev libobjc4 libomp-9-dev libomp5-9 libstdc++-8-dev libz3-4 The following packages will be upgraded: cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev 7 upgraded, 21 newly installed, 0 to remove and 2 not upgraded. Need to get 78.9 MB of archives. After this operation, 237 MB of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libasan5 amd64 9.2.1-30 [389 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 g++-9 amd64 9.2.1-30 [10.7 MB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 gcc-9 amd64 9.2.1-30 [10.0 MB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-9-dev amd64 9.2.1-30 [1697 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libgcc-9-dev amd64 9.2.1-30 [2349 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 cpp-9 amd64 9.2.1-30 [9711 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 gcc-9-base amd64 9.2.1-30 [196 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libz3-4 amd64 4.8.7-4 [6790 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libllvm9 amd64 1:9.0.1-8 [15.0 MB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 libclang-cpp9 amd64 1:9.0.1-8 [8429 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 gcc-8-base amd64 8.3.0-29 [194 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmpx2 amd64 8.3.0-29 [11.4 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libgcc-8-dev amd64 8.3.0-29 [2297 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 libstdc++-8-dev amd64 8.3.0-29 [1543 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libobjc4 amd64 10-20200222-1 [41.6 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libobjc-8-dev amd64 8.3.0-29 [227 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libc6-i386 amd64 2.29-10 [2918 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc-s1 amd64 10-20200222-1 [49.4 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 lib32gcc1 amd64 1:10-20200222-1 [1104 B] Get:23 http://127.0.0.1:12990/debian sid/main amd64 lib32stdc++6 amd64 10-20200222-1 [510 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libclang-common-9-dev amd64 1:9.0.1-8 [3727 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 clang-9 amd64 1:9.0.1-8 [1156 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 libobjc-9-dev amd64 9.2.1-30 [219 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 libomp5-9 amd64 1:9.0.1-8 [333 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 libomp-9-dev amd64 1:9.0.1-8 [66.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.9 MB in 1s (97.1 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12119 files and directories currently installed.) Preparing to unpack .../00-libasan5_9.2.1-30_amd64.deb ... Unpacking libasan5:amd64 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../01-g++-9_9.2.1-30_amd64.deb ... Unpacking g++-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../02-gcc-9_9.2.1-30_amd64.deb ... Unpacking gcc-9 (9.2.1-30) over (9.2.1-29) ... Preparing to unpack .../03-libstdc++-9-dev_9.2.1-30_amd64.deb ... 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Setting up clang-9 (1:9.0.1-8) ... Setting up g++-9 (9.2.1-30) ... Processing triggers for libc-bin (2.29-10) ... W: --force-yes is deprecated, use one of the options starting with --allow instead. + echo 'Replace gcc, g++ & cpp by clang' Replace gcc, g++ & cpp by clang + VERSIONS='4.6 4.7 4.8 4.9 5 6 7 8 9 10' + cd /usr/bin + for VERSION in $VERSIONS + rm -f g++-4.6 gcc-4.6 cpp-4.6 gcc + ln -s clang++-9 g++-4.6 + ln -s clang-9 gcc-4.6 + ln -s clang-9 cpp-4.6 + ln -s clang-9 gcc + echo 'gcc-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.7 gcc-4.7 cpp-4.7 gcc + ln -s clang++-9 g++-4.7 + ln -s clang-9 gcc-4.7 + ln -s clang-9 cpp-4.7 + ln -s clang-9 gcc + echo 'gcc-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.8 gcc-4.8 cpp-4.8 gcc + ln -s clang++-9 g++-4.8 + ln -s clang-9 gcc-4.8 + ln -s clang-9 cpp-4.8 + ln -s clang-9 gcc + echo 'gcc-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-4.9 gcc-4.9 cpp-4.9 gcc + ln -s clang++-9 g++-4.9 + ln -s clang-9 gcc-4.9 + ln -s clang-9 cpp-4.9 + ln -s clang-9 gcc + echo 'gcc-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-4.9 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-4.9 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-5 gcc-5 cpp-5 gcc + ln -s clang++-9 g++-5 + ln -s clang-9 gcc-5 + ln -s clang-9 cpp-5 + ln -s clang-9 gcc + echo 'gcc-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-5 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-5 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-6 gcc-6 cpp-6 gcc + ln -s clang++-9 g++-6 + ln -s clang-9 gcc-6 + ln -s clang-9 cpp-6 + ln -s clang-9 gcc + echo 'gcc-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-6 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-6 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-7 gcc-7 cpp-7 gcc + ln -s clang++-9 g++-7 + ln -s clang-9 gcc-7 + ln -s clang-9 cpp-7 + ln -s clang-9 gcc + echo 'gcc-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-7 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-7 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-8 gcc-8 cpp-8 gcc + ln -s clang++-9 g++-8 + ln -s clang-9 gcc-8 + ln -s clang-9 cpp-8 + ln -s clang-9 gcc + echo 'gcc-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-8 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-8 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + for VERSION in $VERSIONS + rm -f g++-9 gcc-9 cpp-9 gcc + ln -s clang++-9 g++-9 + ln -s clang-9 gcc-9 + ln -s clang-9 cpp-9 + ln -s clang-9 gcc + echo 'gcc-9 hold' + dpkg --set-selections + echo 'g++-9 hold' + dpkg --set-selections + for VERSION in $VERSIONS + rm -f g++-10 gcc-10 cpp-10 gcc + ln -s clang++-9 g++-10 + ln -s clang-9 gcc-10 + ln -s clang-9 cpp-10 + ln -s clang-9 gcc + echo 'gcc-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: gcc-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + echo 'g++-10 hold' + dpkg --set-selections dpkg: warning: package not in status nor available database at line 1: g++-10 dpkg: warning: found unknown packages; this might mean the available database is outdated, and needs to be updated through a frontend method; please see the FAQ + cd - /build/prime-phylo-F12QRU + echo 'Check if gcc, g++ & cpp are actually clang' Check if gcc, g++ & cpp are actually clang + gcc --version + grep clang + cpp --version + grep clang + g++ --version + grep clang I: Finished running '/tmp/clang9'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/prime-phylo-F12QRU/resolver-i8ERjY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://127.0.0.1:12990/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libgmp10 zlib1g 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 343 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://127.0.0.1:12990/debian sid/main amd64 libgmp10 amd64 2:6.2.0+dfsg-4 [253 kB] Get:2 http://127.0.0.1:12990/debian sid/main amd64 zlib1g amd64 1:1.2.11.dfsg-2 [90.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 343 kB in 0s (6284 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.0+dfsg-4) over (2:6.2.0+dfsg-3) ... Setting up libgmp10:amd64 (2:6.2.0+dfsg-4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2) over (1:1.2.11.dfsg-1.2) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'prime-phylo' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/prime-phylo.git Please use: git clone https://salsa.debian.org/med-team/prime-phylo.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 759 kB of source archives. Get:1 http://127.0.0.1:12990/debian sid/main prime-phylo 1.0.11-8 (dsc) [2173 B] Get:2 http://127.0.0.1:12990/debian sid/main prime-phylo 1.0.11-8 (tar) [751 kB] Get:3 http://127.0.0.1:12990/debian sid/main prime-phylo 1.0.11-8 (diff) [6168 B] Fetched 759 kB in 0s (8716 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/prime-phylo-F12QRU/prime-phylo-1.0.11' with '<>' I: NOTICE: Log filtering will replace 'build/prime-phylo-F12QRU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [448 B] Get:5 copy:/<>/apt_archive ./ Packages [533 B] Fetched 1938 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex gengetopt gettext gettext-base gfortran gfortran-9 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libblas-dev libblas3 libboost-dev libboost-mpi-dev libboost-mpi1.67-dev libboost-mpi1.67.0 libboost-serialization-dev libboost-serialization1.67-dev libboost-serialization1.67.0 libboost1.67-dev libbrotli1 libcbor0 libcroco3 libcurl4 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf procps sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff lrzip liblapack-doc libboost-doc libboost-graph1.67-dev libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-contract1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libhwloc-contrib-plugins icu-doc libtool-doc openmpi-doc pciutils gcj-jdk pkg-config m4-doc apparmor less www-browser opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: libfl-dev curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2 libcoarrays-openmpi-dev publicsuffix libsasl2-modules xauth libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file flex gengetopt gettext gettext-base gfortran gfortran-9 groff-base ibverbs-providers icu-devtools intltool-debian libarchive-zip-perl libarchive13 libblas-dev libblas3 libboost-dev libboost-mpi-dev libboost-mpi1.67-dev libboost-mpi1.67.0 libboost-serialization-dev libboost-serialization1.67-dev libboost-serialization1.67.0 libboost1.67-dev libbrotli1 libcbor0 libcroco3 libcurl4 libdebhelper-perl libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1 libfido2-1 libfile-stripnondeterminism-perl libgfortran-9-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu-dev libicu63 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libprocps8 libpsl5 libpsm-infinipath1 libpsm2-2 librdmacm1 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxml2-dev libxnvctrl0 m4 man-db mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf procps sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 79.6 MB of archives. After this operation, 417 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:2 http://127.0.0.1:12990/debian sid/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:3 http://127.0.0.1:12990/debian sid/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:4 http://127.0.0.1:12990/debian sid/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:5 http://127.0.0.1:12990/debian sid/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://127.0.0.1:12990/debian sid/main amd64 man-db amd64 2.9.0-2 [1307 kB] Get:7 http://127.0.0.1:12990/debian sid/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:8 http://127.0.0.1:12990/debian sid/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:9 http://127.0.0.1:12990/debian sid/main amd64 flex amd64 2.6.4-6.2 [456 kB] Get:10 http://127.0.0.1:12990/debian sid/main amd64 libncurses6 amd64 6.1+20191019-1 [102 kB] Get:11 http://127.0.0.1:12990/debian sid/main amd64 libprocps8 amd64 2:3.3.16-1+b1 [62.8 kB] Get:12 http://127.0.0.1:12990/debian sid/main amd64 procps amd64 2:3.3.16-1+b1 [263 kB] Get:13 http://127.0.0.1:12990/debian sid/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://127.0.0.1:12990/debian sid/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:15 http://127.0.0.1:12990/debian sid/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:16 http://127.0.0.1:12990/debian sid/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:17 http://127.0.0.1:12990/debian sid/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://127.0.0.1:12990/debian sid/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get:19 http://127.0.0.1:12990/debian sid/main amd64 libssl1.1 amd64 1.1.1d-2 [1540 kB] Get:20 http://127.0.0.1:12990/debian sid/main amd64 libfido2-1 amd64 1.3.1-1 [47.4 kB] Get:21 http://127.0.0.1:12990/debian sid/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:22 http://127.0.0.1:12990/debian sid/main amd64 libkrb5support0 amd64 1.17-6 [64.6 kB] Get:23 http://127.0.0.1:12990/debian sid/main amd64 libk5crypto3 amd64 1.17-6 [116 kB] Get:24 http://127.0.0.1:12990/debian sid/main amd64 libkrb5-3 amd64 1.17-6 [366 kB] Get:25 http://127.0.0.1:12990/debian sid/main amd64 libgssapi-krb5-2 amd64 1.17-6 [156 kB] Get:26 http://127.0.0.1:12990/debian sid/main amd64 openssh-client amd64 1:8.2p1-3 [906 kB] Get:27 http://127.0.0.1:12990/debian sid/main amd64 autoconf all 2.69-11.1 [341 kB] Get:28 http://127.0.0.1:12990/debian sid/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:29 http://127.0.0.1:12990/debian sid/main amd64 automake all 1:1.16.1-4 [771 kB] Get:30 http://127.0.0.1:12990/debian sid/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:31 http://127.0.0.1:12990/debian sid/main amd64 bison amd64 2:3.5.1+dfsg-1 [963 kB] Get:32 http://127.0.0.1:12990/debian sid/main amd64 cmake-data all 3.16.3-1 [1628 kB] Get:33 http://127.0.0.1:12990/debian sid/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:34 http://127.0.0.1:12990/debian sid/main amd64 libxml2 amd64 2.9.10+dfsg-3 [709 kB] Get:35 http://127.0.0.1:12990/debian sid/main amd64 libarchive13 amd64 3.4.0-1+b1 [335 kB] Get:36 http://127.0.0.1:12990/debian sid/main amd64 libbrotli1 amd64 1.0.7-6 [266 kB] Get:37 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [69.0 kB] Get:38 http://127.0.0.1:12990/debian sid/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [106 kB] Get:39 http://127.0.0.1:12990/debian sid/main amd64 libldap-common all 2.4.49+dfsg-1 [91.9 kB] Get:40 http://127.0.0.1:12990/debian sid/main amd64 libldap-2.4-2 amd64 2.4.49+dfsg-1 [226 kB] Get:41 http://127.0.0.1:12990/debian sid/main amd64 libnghttp2-14 amd64 1.40.0-1 [85.0 kB] Get:42 http://127.0.0.1:12990/debian sid/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get:43 http://127.0.0.1:12990/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b1 [60.8 kB] Get:44 http://127.0.0.1:12990/debian sid/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:45 http://127.0.0.1:12990/debian sid/main amd64 libcurl4 amd64 7.68.0-1 [321 kB] Get:46 http://127.0.0.1:12990/debian sid/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:47 http://127.0.0.1:12990/debian sid/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:48 http://127.0.0.1:12990/debian sid/main amd64 librhash0 amd64 1.3.9-1 [123 kB] Get:49 http://127.0.0.1:12990/debian sid/main amd64 libuv1 amd64 1.34.2-1 [127 kB] Get:50 http://127.0.0.1:12990/debian sid/main amd64 cmake amd64 3.16.3-1 [3673 kB] Get:51 http://127.0.0.1:12990/debian sid/main amd64 libtool all 2.4.6-13 [513 kB] Get:52 http://127.0.0.1:12990/debian sid/main amd64 dh-autoreconf all 19 [16.9 kB] Get:53 http://127.0.0.1:12990/debian sid/main amd64 libdebhelper-perl all 12.9 [183 kB] Get:54 http://127.0.0.1:12990/debian sid/main amd64 libarchive-zip-perl all 1.67-1 [104 kB] Get:55 http://127.0.0.1:12990/debian sid/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:56 http://127.0.0.1:12990/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB] Get:57 http://127.0.0.1:12990/debian sid/main amd64 dh-strip-nondeterminism all 1.6.3-2 [14.7 kB] Get:58 http://127.0.0.1:12990/debian sid/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:59 http://127.0.0.1:12990/debian sid/main amd64 dwz amd64 0.13-5 [151 kB] Get:60 http://127.0.0.1:12990/debian sid/main amd64 libglib2.0-0 amd64 2.62.4-2 [1319 kB] Get:61 http://127.0.0.1:12990/debian sid/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:62 http://127.0.0.1:12990/debian sid/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:63 http://127.0.0.1:12990/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:64 http://127.0.0.1:12990/debian sid/main amd64 po-debconf all 1.0.21 [248 kB] Get:65 http://127.0.0.1:12990/debian sid/main amd64 debhelper all 12.9 [994 kB] Get:66 http://127.0.0.1:12990/debian sid/main amd64 gengetopt amd64 2.22.6+dfsg0-4 [176 kB] Get:67 http://127.0.0.1:12990/debian sid/main amd64 libgfortran5 amd64 10-20200222-1 [721 kB] Get:68 http://127.0.0.1:12990/debian sid/main amd64 libgfortran-9-dev amd64 9.2.1-30 [676 kB] Get:69 http://127.0.0.1:12990/debian sid/main amd64 gfortran-9 amd64 9.2.1-30 [10.4 MB] Get:70 http://127.0.0.1:12990/debian sid/main amd64 gfortran amd64 4:9.2.1-3.1 [1432 B] Get:71 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get:72 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get:73 http://127.0.0.1:12990/debian sid/main amd64 libibverbs1 amd64 28.0-1 [54.5 kB] Get:74 http://127.0.0.1:12990/debian sid/main amd64 ibverbs-providers amd64 28.0-1 [234 kB] Get:75 http://127.0.0.1:12990/debian sid/main amd64 icu-devtools amd64 63.2-2 [189 kB] Get:76 http://127.0.0.1:12990/debian sid/main amd64 libblas3 amd64 3.9.0-1 [153 kB] Get:77 http://127.0.0.1:12990/debian sid/main amd64 libblas-dev amd64 3.9.0-1 [160 kB] Get:78 http://127.0.0.1:12990/debian sid/main amd64 libboost1.67-dev amd64 1.67.0-17 [8389 kB] Get:79 http://127.0.0.1:12990/debian sid/main amd64 libboost-dev amd64 1.67.0.2+b1 [4496 B] Get:80 http://127.0.0.1:12990/debian sid/main amd64 libboost-serialization1.67.0 amd64 1.67.0-17 [318 kB] Get:81 http://127.0.0.1:12990/debian sid/main amd64 libboost-serialization1.67-dev amd64 1.67.0-17 [358 kB] Get:82 http://127.0.0.1:12990/debian sid/main amd64 libevent-2.1-7 amd64 2.1.11-stable-1 [186 kB] Get:83 http://127.0.0.1:12990/debian sid/main amd64 libevent-core-2.1-7 amd64 2.1.11-stable-1 [137 kB] Get:84 http://127.0.0.1:12990/debian sid/main amd64 libevent-pthreads-2.1-7 amd64 2.1.11-stable-1 [55.1 kB] Get:85 http://127.0.0.1:12990/debian sid/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6+b1 [169 kB] Get:86 http://127.0.0.1:12990/debian sid/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get:87 http://127.0.0.1:12990/debian sid/main amd64 libpsm2-2 amd64 11.2.86-1 [177 kB] Get:88 http://127.0.0.1:12990/debian sid/main amd64 librdmacm1 amd64 28.0-1 [67.1 kB] Get:89 http://127.0.0.1:12990/debian sid/main amd64 libfabric1 amd64 1.6.2-3+b1 [397 kB] Get:90 http://127.0.0.1:12990/debian sid/main amd64 libltdl7 amd64 2.4.6-13 [390 kB] Get:91 http://127.0.0.1:12990/debian sid/main amd64 libhwloc15 amd64 2.1.0+dfsg-3 [139 kB] Get:92 http://127.0.0.1:12990/debian sid/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get:93 http://127.0.0.1:12990/debian sid/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:94 http://127.0.0.1:12990/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:95 http://127.0.0.1:12990/debian sid/main amd64 libxcb1 amd64 1.13.1-5 [137 kB] Get:96 http://127.0.0.1:12990/debian sid/main amd64 libx11-data all 2:1.6.8-1 [298 kB] Get:97 http://127.0.0.1:12990/debian sid/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB] Get:98 http://127.0.0.1:12990/debian sid/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:99 http://127.0.0.1:12990/debian sid/main amd64 libxnvctrl0 amd64 440.59-1 [26.2 kB] Get:100 http://127.0.0.1:12990/debian sid/main amd64 ocl-icd-libopencl1 amd64 2.2.12-3 [37.7 kB] Get:101 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-plugins amd64 2.1.0+dfsg-3 [19.9 kB] Get:102 http://127.0.0.1:12990/debian sid/main amd64 libpmix2 amd64 3.1.4-1+b1 [431 kB] Get:103 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi3 amd64 4.0.2-5 [1993 kB] Get:104 http://127.0.0.1:12990/debian sid/main amd64 libboost-mpi1.67.0 amd64 1.67.0-17 [272 kB] Get:105 http://127.0.0.1:12990/debian sid/main amd64 openmpi-common all 4.0.2-5 [169 kB] Get:106 http://127.0.0.1:12990/debian sid/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get:107 http://127.0.0.1:12990/debian sid/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get:108 http://127.0.0.1:12990/debian sid/main amd64 libibverbs-dev amd64 28.0-1 [444 kB] Get:109 http://127.0.0.1:12990/debian sid/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get:110 http://127.0.0.1:12990/debian sid/main amd64 libltdl-dev amd64 2.4.6-13 [162 kB] Get:111 http://127.0.0.1:12990/debian sid/main amd64 libhwloc-dev amd64 2.1.0+dfsg-3 [210 kB] Get:112 http://127.0.0.1:12990/debian sid/main amd64 libevent-extra-2.1-7 amd64 2.1.11-stable-1 [108 kB] Get:113 http://127.0.0.1:12990/debian sid/main amd64 libevent-openssl-2.1-7 amd64 2.1.11-stable-1 [62.0 kB] Get:114 http://127.0.0.1:12990/debian sid/main amd64 libevent-dev amd64 2.1.11-stable-1 [309 kB] Get:115 http://127.0.0.1:12990/debian sid/main amd64 openmpi-bin amd64 4.0.2-5 [186 kB] Get:116 http://127.0.0.1:12990/debian sid/main amd64 libopenmpi-dev amd64 4.0.2-5 [915 kB] Get:117 http://127.0.0.1:12990/debian sid/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get:118 http://127.0.0.1:12990/debian sid/main amd64 libboost-mpi1.67-dev amd64 1.67.0-17 [382 kB] Get:119 http://127.0.0.1:12990/debian sid/main amd64 libboost-mpi-dev amd64 1.67.0.2+b1 [4364 B] Get:120 http://127.0.0.1:12990/debian sid/main amd64 libboost-serialization-dev amd64 1.67.0.2+b1 [4500 B] Get:121 http://127.0.0.1:12990/debian sid/main amd64 libicu-dev amd64 63.2-2 [9190 kB] Get:122 http://127.0.0.1:12990/debian sid/main amd64 liblapack3 amd64 3.9.0-1 [2168 kB] Get:123 http://127.0.0.1:12990/debian sid/main amd64 liblapack-dev amd64 3.9.0-1 [4256 kB] Get:124 http://127.0.0.1:12990/debian sid/main amd64 libxml2-dev amd64 2.9.10+dfsg-3 [805 kB] Get:125 http://127.0.0.1:12990/debian sid/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.6 MB in 1s (91.2 MB/s) Selecting previously unselected package bsdmainutils. (Reading database ... 13921 files and directories currently installed.) Preparing to unpack .../000-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../005-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. 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Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../122-libxml2-dev_2.9.10+dfsg-3_amd64.deb ... Unpacking libxml2-dev:amd64 (2.9.10+dfsg-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../123-zlib1g-dev_1%3a1.2.11.dfsg-2_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../124-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libboost1.67-dev:amd64 (1.67.0-17) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libxcb1:amd64 (1.13.1-5) ... Setting up gengetopt (2.22.6+dfsg0-4) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-2) ... Setting up libdebhelper-perl (12.9) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.34.2-1) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libevent-core-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libevent-2.1-7:amd64 (2.1.11-stable-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up icu-devtools (63.2-2) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libltdl7:amd64 (2.4.6-13) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libgfortran5:amd64 (10-20200222-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.12-3) ... Setting up librhash0:amd64 (1.3.9-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libpsm2-2 (11.2.86-1) ... Setting up openmpi-common (4.0.2-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.16.3-1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libboost-dev:amd64 (1.67.0.2+b1) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6+b1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libfido2-1:amd64 (1.3.1-1) ... Setting up libboost-serialization1.67.0:amd64 (1.67.0-17) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libicu-dev:amd64 (63.2-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-3) ... Setting up libprocps8:amd64 (2:3.3.16-1+b1) ... Setting up libblas-dev:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libjsoncpp1:amd64 (1.7.4-3.1) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libboost-serialization1.67-dev:amd64 (1.67.0-17) ... Setting up libevent-extra-2.1-7:amd64 (2.1.11-stable-1) ... Setting up liblapack3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-13) ... Setting up libarchive13:amd64 (3.4.0-1+b1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libgfortran-9-dev:amd64 (9.2.1-30) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.11-stable-1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up libnuma-dev:amd64 (2.0.12-1+b1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libxnvctrl0:amd64 (440.59-1) ... Setting up libxml2-dev:amd64 (2.9.10+dfsg-3) ... Setting up libevent-dev (2.1.11-stable-1) ... Setting up liblapack-dev:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libhwloc15:amd64 (2.1.0+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libboost-serialization-dev:amd64 (1.67.0.2+b1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-1+b1) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up bison (2:3.5.1+dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libcurl4:amd64 (7.68.0-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (28.0-1) ... Setting up flex (2.6.4-6.2) ... Setting up gettext (0.19.8.1-10) ... Setting up gfortran-9 (9.2.1-30) ... Setting up ibverbs-providers:amd64 (28.0-1) ... Setting up openssh-client (1:8.2p1-3) ... Setting up libhwloc-plugins:amd64 (2.1.0+dfsg-3) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up libltdl-dev:amd64 (2.4.6-13) ... Setting up cmake (3.16.3-1) ... Setting up libhwloc-dev:amd64 (2.1.0+dfsg-3) ... Setting up librdmacm1:amd64 (28.0-1) ... Setting up libpmix2:amd64 (3.1.4-1+b1) ... Setting up po-debconf (1.0.21) ... Setting up libibverbs-dev:amd64 (28.0-1) ... Setting up libfabric1 (1.6.2-3+b1) ... Setting up libopenmpi3:amd64 (4.0.2-5) ... Setting up libboost-mpi1.67.0 (1.67.0-17) ... Setting up openmpi-bin (4.0.2-5) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.0.2-5) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Setting up libboost-mpi1.67-dev (1.67.0-17) ... Setting up libboost-mpi-dev (1.67.0.2+b1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-cloud-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-3 dpkg-dev_1.19.7 g++-9_9.2.1-30 gcc-9_9.2.1-30 libc6-dev_2.29-10 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 linux-libc-dev_5.4.19-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.34-3 binutils-common_2.34-3 binutils-x86-64-linux-gnu_2.34-3 bison_2:3.5.1+dfsg-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 clang-9_1:9.0.1-8 cmake_3.16.3-1 cmake-data_3.16.3-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-30 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 flex_2.6.4-6.2 g++_4:9.2.1-3.1 g++-9_9.2.1-30 gcc_4:9.2.1-3.1 gcc-10-base_10-20200222-1 gcc-8-base_8.3.0-29 gcc-9_9.2.1-30 gcc-9-base_9.2.1-30 gengetopt_2.22.6+dfsg0-4 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1 gfortran-9_9.2.1-30 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3+b1 hostname_3.23 ibverbs-providers_28.0-1 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 lib32gcc-s1_10-20200222-1 lib32gcc1_1:10-20200222-1 lib32stdc++6_10-20200222-1 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libarchive13_3.4.0-1+b1 libasan5_9.2.1-30 libatomic1_10-20200222-1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3 libblas-dev_3.9.0-1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libboost-dev_1.67.0.2+b1 libboost-mpi-dev_1.67.0.2+b1 libboost-mpi1.67-dev_1.67.0-17 libboost-mpi1.67.0_1.67.0-17 libboost-serialization-dev_1.67.0.2+b1 libboost-serialization1.67-dev_1.67.0-17 libboost-serialization1.67.0_1.67.0-17 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10 libc-dev-bin_2.29-10 libc6_2.29-10 libc6-dev_2.29-10 libc6-i386_2.29-10 libcap-ng0_0.7.9-2.1+b1 libcbor0_0.5.0+dfsg-2 libcc1-0_10-20200222-1 libclang-common-9-dev_1:9.0.1-8 libclang-cpp9_1:9.0.1-8 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10 libcrypt1_1:4.4.10-10 libctf-nobfd0_2.34-3 libctf0_2.34-3 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfabric1_1.6.2-3+b1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfido2-1_1.3.1-1 libfile-stripnondeterminism-perl_1.6.3-2 libgc1c2_1:7.6.4-0.4 libgcc-8-dev_8.3.0-29 libgcc-9-dev_9.2.1-30 libgcc-s1_10-20200222-1 libgcc1_1:10-20200222-1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-30 libgfortran5_10-20200222-1 libglib2.0-0_2.62.4-2 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200222-1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.1.0+dfsg-3 libhwloc-plugins_2.1.0+dfsg-3 libhwloc15_2.1.0+dfsg-3 libibverbs-dev_28.0-1 libibverbs1_28.0-1 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libitm1_10-20200222-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-6 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6 libkrb5support0_1.17-6 liblapack-dev_3.9.0-1 liblapack3_3.9.0-1 libldap-2.4-2_2.4.49+dfsg-1 libldap-common_2.4.49+dfsg-1 libllvm9_1:9.0.1-8 liblsan0_10-20200222-1 libltdl-dev_2.4.6-13 libltdl7_2.4.6-13 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-29 libncurses6_6.1+20191019-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnl-3-200_3.4.0-1+b1 libnl-3-dev_3.4.0-1+b1 libnl-route-3-200_3.4.0-1+b1 libnl-route-3-dev_3.4.0-1+b1 libnuma-dev_2.0.12-1+b1 libnuma1_2.0.12-1+b1 libobjc-8-dev_8.3.0-29 libobjc-9-dev_9.2.1-30 libobjc4_10-20200222-1 libomp-9-dev_1:9.0.1-8 libomp5-9_1:9.0.1-8 libopenmpi-dev_4.0.2-5 libopenmpi3_4.0.2-5 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12+b1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpmix2_3.1.4-1+b1 libprocps8_2:3.3.16-1+b1 libpsl5_0.20.2-2 libpsm-infinipath1_3.3+20.604758e7-6+b1 libpsm2-2_11.2.86-1 libquadmath0_10-20200222-1 librdmacm1_28.0-1 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-8-dev_8.3.0-29 libstdc++-9-dev_9.2.1-30 libstdc++6_10-20200222-1 libsub-override-perl_0.09-2 libsystemd0_244.3-1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libtsan0_10-20200222-1 libubsan1_10-20200222-1 libuchardet0_0.0.6-3 libudev1_244.3-1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.34.2-1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb1_1.13.1-5 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-3 libxml2-dev_2.9.10+dfsg-3 libxnvctrl0_440.59-1 libz3-4_4.8.7-4 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.19-1 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-2 mount_2.34-0.1 mpi-default-dev_1.13 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 ocl-icd-libopencl1_2.2.12-3 openmpi-bin_4.0.2-5 openmpi-common_4.0.2-5 openssh-client_1:8.2p1-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 po-debconf_1.0.21 procps_2:3.3.16-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6+b1 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: prime-phylo Binary: prime-phylo Architecture: any Version: 1.0.11-8 Maintainer: Debian Med Packaging Team Uploaders: Erik Sjolund , Andreas Tille Homepage: http://prime.sbc.su.se Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/prime-phylo Vcs-Git: https://salsa.debian.org/med-team/prime-phylo.git Build-Depends: debhelper-compat (= 12), gengetopt, cmake, libblas-dev, liblapack-dev, gfortran, bison, flex, libopenmpi-dev, libxml2-dev, libboost-dev, libboost-mpi-dev, libboost-serialization-dev, zlib1g-dev Package-List: prime-phylo deb science optional arch=any Checksums-Sha1: 1dd3b086599e29f6a17319f8ebe294cd6eed0c07 750651 prime-phylo_1.0.11.orig.tar.gz 3cf559eb0b1b36ebf0d8f13b17e8b652ff943380 6168 prime-phylo_1.0.11-8.debian.tar.xz Checksums-Sha256: 5d46b4e528417bb4a0be56756069f255f86ab58b28b55fa6a96983f10585bd8d 750651 prime-phylo_1.0.11.orig.tar.gz 63b0e97e8ca076eb938576cfd913f6f19983de8c974112555fcdefa0670ab9c0 6168 prime-phylo_1.0.11-8.debian.tar.xz Files: 0356071434de01edf92a1b9182ed6ef1 750651 prime-phylo_1.0.11.orig.tar.gz 8e4bba4c018fae7738feeddc96528049 6168 prime-phylo_1.0.11-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl3w9/0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH3/Q/+K81ExXJqmxUYKINioCygCQefMCkWoXPT 7dxVv9YR67GO3tDvbBZ9QyVeRMx8Izf0F0X9Athm9i8X+ruGoLgeYthrnp27jUCe mnZlv7r7WlIlv1lCPJB+nobo84ytJkD+/m3cMeXwg/Hu8ZtOPksnP+gBWxS3UnHJ LLoiWlZ5+jYnntNhFswwdWDe3EeaCQOd9Wu6BDgMRNxSxXNLgSMJTYSnwbe4vk9x 8pFEc5NsUdGgVtwS1zpFm0toKoozbSSgKhmytQCj8kbFi5JJ25zyUaa939ZkNztT atGuIBH69g55oixYj4tlCQkT4L23424X8hUt5fnq4AfZ6q997VDuUNoQ5v5NMo1L kHk6ZwC7NvxpfR3xEvjVmz+9WKj2UDmOqEKfFl7Tful3ctHVgClU+oveBNResnum mXOJb4Ix72D+7lF2LvehzKv2O1eAyBWCN0NEy7w4d+m5I9OzRKibAkJboSyPVIsN PfUMyjPIHr9cgNeDYPfj5xtXjCYCknYLlUKwCUXzyoF1HRCOLQ84QhtAxBKygG/+ d83ncWsoIjJ4PIIKwSL5P7NYnQkMsiNz1tgEEvH6p5gMRomJSauORmX1WpXKDsFl YqMlsU8DV3z++MyFEEl3hDCnJMRlDF6sOGhsmDfboHz7jCdfmHjtn69vcHpNodXd 4RkQRT9+SH4= =HADy -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 11 14:06:53 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./prime-phylo_1.0.11-8.dsc dpkg-source: info: extracting prime-phylo in /<> dpkg-source: info: unpacking prime-phylo_1.0.11.orig.tar.gz dpkg-source: info: unpacking prime-phylo_1.0.11-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-with-Boost160.patch dpkg-source: info: applying fix-gcc-8.patch dpkg-source: info: applying 0003-Fix-build-with-Boost-1.67.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=user42 PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1001 SCHROOT_GROUP=user42 SCHROOT_SESSION_ID=sid-amd64-sbuild-2633fa11-deb4-4590-a776-7c3ac2053ec8 SCHROOT_UID=1001 SCHROOT_USER=user42 SHELL=/bin/sh USER=user42 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -b -rfakeroot dpkg-buildpackage: info: source package prime-phylo dpkg-buildpackage: info: source version 1.0.11-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build dh build --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -Dofficial_binary_packaging=on \ -Dprime_dynamic=on \ -DCMAKE_INSTALL_PREFIX=/usr \ -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo \ -DCMAKE_BUILD_TYPE=RELEASE cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dofficial_binary_packaging=on -Dprime_dynamic=on -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_INSTALL_RPATH=/usr/lib/prime-phylo -DCMAKE_BUILD_TYPE=RELEASE .. -- The CXX compiler identification is Clang 9.0.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The Fortran compiler identification is GNU 9.2.1 -- Check for working Fortran compiler: /usr/bin/f95 -- Check for working Fortran compiler: /usr/bin/f95 -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/bin/f95 supports Fortran 90 -- Checking whether /usr/bin/f95 supports Fortran 90 -- yes -- The C compiler identification is Clang 9.0.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so hittade /usr/lib/x86_64-linux-gnu/libblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - not found -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- A library with LAPACK API found. -- Found BISON: /usr/bin/bison (found version "3.5.1") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI_Fortran: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost: /usr/include (found suitable version "1.67.0", minimum required is "1.40.0") found components: mpi serialization -- Found LibXml2: /usr/lib/x86_64-linux-gnu/libxml2.so (found version "2.9.10") mpilib is /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include included path is CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property): Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "primeDTLSR". Use the target name directly with add_custom_command, or use the generator expression $, as appropriate. Call Stack (most recent call first): src/cxx/applications/primeDTLSR/CMakeLists.txt:30 (prime_add_tests) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property): Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "primeDLRS". Use the target name directly with add_custom_command, or use the generator expression $, as appropriate. Call Stack (most recent call first): src/cxx/applications/primeDLRS/CMakeLists.txt:27 (prime_add_tests) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/cxx/CMakeLists.txt:366 (get_target_property): Policy CMP0026 is not set: Disallow use of the LOCATION target property. Run "cmake --help-policy CMP0026" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The LOCATION property should not be read from target "showtree". Use the target name directly with add_custom_command, or use the generator expression $, as appropriate. Call Stack (most recent call first): src/cxx/tools/showtree/CMakeLists.txt:12 (prime_add_tests) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at CMakeLists.txt:120 (if): Policy CMP0053 is not set: Simplify variable reference and escape sequence evaluation. Run "cmake --help-policy CMP0053" for policy details. Use the cmake_policy command to set the policy and suppress this warning. For input: '@CMAKE_SOURCE_DIR@/excluded_from_release' the old evaluation rules produce: '/<>/excluded_from_release' but the new evaluation rules produce: '@CMAKE_SOURCE_DIR@/excluded_from_release' Using the old result for compatibility since the policy is not set. This warning is for project developers. Use -Wno-dev to suppress it. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 1%] [FLEX][MyScanner2] Building scanner with flex 2.6.4 [ 1%] [BISON][MyParser2] Building parser with bison 3.5.1 cd /<>/src/cxx/libraries/sfile && /usr/bin/flex -o/<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c seqreader.l cd /<>/src/cxx/libraries/sfile && /usr/bin/bison -d -d -o /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c gb.y gb.y: warning: 1 nonterminal useless in grammar [-Wother] gb.y: warning: 1 rule useless in grammar [-Wother] gb.y:258.1-12: warning: nonterminal useless in grammar: darwin_entry [-Wother] 258 | darwin_entry : TEXT {$$ = NULL; /* Not implemented yet */} | ^~~~~~~~~~~~ cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cxx/libraries/sfile /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/DependInfo.cmake --color= Scanning dependencies of target prime-phylo-sfile make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o [ 2%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o [ 2%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o [ 3%] Building C object src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/lexer.c.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -c /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/gbread.c.o -c /<>/src/cxx/libraries/sfile/gbread.c cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -c /<>/src/cxx/libraries/sfile/sfile.c cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_sfile_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile -I/<>/src/cxx/libraries/sfile -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries/prime -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o -c /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c /<>/src/cxx/libraries/sfile/gbread.c:17:10: warning: implicitly declaring library function 'strcmp' with type 'int (const char *, const char *)' [-Wimplicit-function-declaration] if (!strcmp(argv[opt], "-d")) { ^ /<>/src/cxx/libraries/sfile/gbread.c:17:10: note: include the header or explicitly provide a declaration for 'strcmp' /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c:1335:16: warning: implicit declaration of function 'yylex' is invalid in C99 [-Wimplicit-function-declaration] yychar = yylex (); ^ 1 warning generated. gb.y:291:70: warning: implicit declaration of function 'linenumber' is invalid in C99 [-Wimplicit-function-declaration] printf("Can't parse file. Error is '%s', on line %d.\n", msg, linenumber()); ^ gb.y:402:9: warning: unused variable 'new_buf' [-Wunused-variable] char *new_buf; ^ seqreader.l:197:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'char *' [-Wnon-literal-null-conversion] last = '\0'; ^~~~ seqreader.l:270:9: warning: unused variable 'code' [-Wunused-variable] int code; /* return value */ ^ /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1821:17: warning: unused function 'yyunput' [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^ /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1864:16: warning: function 'input' is not needed and will not be emitted [-Wunneeded-internal-declaration] static int input (void) ^ 3 warnings generated. 4 warnings generated. [ 4%] Linking C shared library libprime-phylo-sfile.so cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && /usr/bin/cmake -E cmake_link_script CMakeFiles/prime-phylo-sfile.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libprime-phylo-sfile.so -o libprime-phylo-sfile.so CMakeFiles/prime-phylo-sfile.dir/gbread.c.o CMakeFiles/prime-phylo-sfile.dir/sfile.c.o CMakeFiles/prime-phylo-sfile.dir/lexer.c.o CMakeFiles/prime-phylo-sfile.dir/gb.tab.c.o -Wl,-rpath,:::::::::::::::::::: make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 4%] Built target prime-phylo-sfile make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 5%] [BISON][MyParser] Building parser with bison 3.5.1 [ 5%] [FLEX][MyScanner] Building scanner with flex 2.6.4 cd /<>/src/cxx/libraries/prime && /usr/bin/flex -Pyytree_ -o/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/lexer.c NHX.l cd /<>/src/cxx/libraries/prime && /usr/bin/bison -d -y -p yytree_ -d -o /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/NHXparse.c NHXparse.y NHXparse.y:105.1-7: warning: POSIX Yacc does not support %expect [-Wyacc] 105 | %expect 4 | ^~~~~~~ cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/cxx/libraries/prime /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/DependInfo.cmake --color= Scanning dependencies of target prime-phylo make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/lexer.c.o [ 7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXtree.c.o [ 7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXnode.c.o [ 7%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXannotation.c.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXtree.c.o -c /<>/src/cxx/libraries/prime/NHXtree.c cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXnode.c.o -c /<>/src/cxx/libraries/prime/NHXnode.c cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXannotation.c.o -c /<>/src/cxx/libraries/prime/NHXannotation.c cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/lexer.c.o -c /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/lexer.c /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/lexer.c:1554:17: warning: unused function 'yyunput' [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^ /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/lexer.c:1597:16: warning: function 'input' is not needed and will not be emitted [-Wunneeded-internal-declaration] static int input (void) ^ [ 8%] Building C object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/NHXparse.c.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/NHXparse.c.o -c /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/NHXparse.c [ 8%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/AnError.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/AnError.cc.o -c /<>/src/cxx/libraries/prime/AnError.cc [ 9%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Beep.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Beep.cc.o -c /<>/src/cxx/libraries/prime/Beep.cc /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/NHXparse.c:1377:16: warning: implicit declaration of function 'yytree_lex' is invalid in C99 [-Wimplicit-function-declaration] yychar = yylex (); ^ /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime/NHXparse.c:68:25: note: expanded from macro 'yylex' #define yylex yytree_lex ^ NHXparse.y:351:5: warning: implicit declaration of function 'close' is invalid in C99 [-Wimplicit-function-declaration] close(f); ^ NHXparse.y:399:3: warning: implicit declaration of function 'read_from_string' is invalid in C99 [-Wimplicit-function-declaration] read_from_string(str); ^ NHXparse.y:404:3: warning: implicit declaration of function 'close_string_buffer' is invalid in C99 [-Wimplicit-function-declaration] close_string_buffer(); ^ 4 warnings generated. 2 warnings generated. [ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/BeepOption.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/BeepOption.cc.o -c /<>/src/cxx/libraries/prime/BeepOption.cc [ 10%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/Hacks.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/Hacks.cc.o -c /<>/src/cxx/libraries/prime/Hacks.cc [ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/ODESolver.cc.o -c /<>/src/cxx/libraries/prime/ODESolver.cc [ 11%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PRNG.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/PRNG.cc.o -c /<>/src/cxx/libraries/prime/PRNG.cc [ 12%] Building CXX object src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o cd /<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++ -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC -o CMakeFiles/prime-phylo.dir/PrimeOptionMap.cc.o -c /<>/src/cxx/libraries/prime/PrimeOptionMap.cc In file included from /<>/src/cxx/libraries/prime/ODESolver.cc:4: /<>/src/cxx/libraries/prime/ODESolver.hh:359:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real C2 = 1.0 / 5.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:359:2: note: add 'constexpr' static const Real C2 = 1.0 / 5.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:360:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real C3 = 3.0 / 10.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:360:2: note: add 'constexpr' static const Real C3 = 3.0 / 10.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:361:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real C4 = 4.0 / 5.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:361:2: note: add 'constexpr' static const Real C4 = 4.0 / 5.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:362:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real C5 = 8.0 / 9.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:362:2: note: add 'constexpr' static const Real C5 = 8.0 / 9.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:363:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A21 = 1.0 / 5.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:363:2: note: add 'constexpr' static const Real A21 = 1.0 / 5.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:364:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A31 = 3.0 / 40.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:364:2: note: add 'constexpr' static const Real A31 = 3.0 / 40.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:365:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A32 = 9.0 / 40.0; ^ ~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:365:2: note: add 'constexpr' static const Real A32 = 9.0 / 40.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:366:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A41 = 44.0 / 45.0; ^ ~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:366:2: note: add 'constexpr' static const Real A41 = 44.0 / 45.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:367:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A42 = -56.0 / 15.0; ^ ~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:367:2: note: add 'constexpr' static const Real A42 = -56.0 / 15.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:368:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A43 = 32.0 / 9.0; ^ ~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:368:2: note: add 'constexpr' static const Real A43 = 32.0 / 9.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:369:20: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A51 = 19372.0 / 6561.0; ^ ~~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:369:2: note: add 'constexpr' static const Real A51 = 19372.0 / 6561.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:370:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A52 = -25360.0 / 2187.0; ^ ~~~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:370:5: note: add 'constexpr' static const Real A52 = -25360.0 / 2187.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:371:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A53 = 64448.0 / 6561.0; ^ ~~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:371:5: note: add 'constexpr' static const Real A53 = 64448.0 / 6561.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:372:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A54 = -212.0 / 729.0; ^ ~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:372:5: note: add 'constexpr' static const Real A54 = -212.0 / 729.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:373:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A61 = 9017.0 / 3168.0; ^ ~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:373:5: note: add 'constexpr' static const Real A61 = 9017.0 / 3168.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:374:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A62 = -355.0 / 33.0; ^ ~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:374:5: note: add 'constexpr' static const Real A62 = -355.0 / 33.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:375:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A63 = 46732.0 / 5247.0; ^ ~~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:375:5: note: add 'constexpr' static const Real A63 = 46732.0 / 5247.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:376:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A64 = 49.0 / 176.0; ^ ~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:376:5: note: add 'constexpr' static const Real A64 = 49.0 / 176.0; ^ constexpr /<>/src/cxx/libraries/prime/ODESolver.hh:377:23: error: in-class initializer for static data member of type 'const beep::Real' (aka 'const double') requires 'constexpr' specifier [-Wstatic-float-init] static const Real A65 = -5103.0 / 18656.0; ^ ~~~~~~~~~~~~~~~~~~ /<>/src/cxx/libraries/prime/ODESolver.hh:377:5: note: add 'constexpr' static const Real A65 = -5103.0 / 18656.0; ^ constexpr fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make[3]: *** [src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/build.make:195: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/ODESolver.cc.o] Error 1 make[3]: *** Waiting for unfinished jobs.... In file included from /<>/src/cxx/libraries/prime/PrimeOptionMap.cc:3: /<>/src/cxx/libraries/prime/PrimeOption.hh:391:2: warning: struct 'UserSubstMatrixParams' was previously declared as a class; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] struct UserSubstMatrixParams tmpVal; ^ /<>/src/cxx/libraries/prime/PrimeOptionMap.hh:23:9: note: previous use is here class UserSubstMatrixParams ^ /<>/src/cxx/libraries/prime/PrimeOption.hh:391:2: note: did you mean class here? struct UserSubstMatrixParams tmpVal; ^~~~~~ class /<>/src/cxx/libraries/prime/PrimeOption.hh:407:56: warning: adding 'unsigned int' to a string does not append to the string [-Wstring-plus-int] throw AnError("Wrong dimension of Pi, should be " + dim, 1); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/src/cxx/libraries/prime/PrimeOption.hh:407:56: note: use array indexing to silence this warning throw AnError("Wrong dimension of Pi, should be " + dim, 1); ^ & [ ] /<>/src/cxx/libraries/prime/PrimeOption.hh:425:55: warning: adding 'unsigned int' to a string does not append to the string [-Wstring-plus-int] throw AnError("Wrong dimension of R, should be " + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ /<>/src/cxx/libraries/prime/PrimeOption.hh:425:55: note: use array indexing to silence this warning throw AnError("Wrong dimension of R, should be " + ^ & [ 3 warnings generated. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:346: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/all] Error 2 make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:155: all] Error 2 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:12: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-02-25T14:41:33Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 12868 Build-Time: 10 Distribution: unstable Fail-Stage: build Host Architecture: amd64 Install-Time: 14 Job: prime-phylo_1.0.11-8 Machine Architecture: amd64 Package: prime-phylo Package-Time: 41 Source-Version: 1.0.11-8 Space: 12868 Status: attempted Version: 1.0.11-8 -------------------------------------------------------------------------------- Finished at 2020-02-25T14:41:33Z Build needed 00:00:41, 12868k disk space E: Build failure (dpkg-buildpackage died) DC-Status: Failed 41.912206719s DC-Time-Estimation: 41.912206719 versus expected 320 (r/m: 6.635007198390604 ; m: 41.912206719)